ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV2900    good          R     KOG3033  General function prediction only                               Predicted PhzC/PhzF-type epimerase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2900 1007254  1007586 111  
         (111 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR029c [R] KOG3033 Predicted PhzC/PhzF-type epimerase                144   2e-35
At1g03210 [R] KOG3033 Predicted PhzC/PhzF-type epimerase               60   5e-10
At4g02860 [R] KOG3033 Predicted PhzC/PhzF-type epimerase               60   6e-10
CE13124B [R] KOG3033 Predicted PhzC/PhzF-type epimerase                46   1e-05
CE13124A [R] KOG3033 Predicted PhzC/PhzF-type epimerase                46   1e-05

>YHR029c [R] KOG3033 Predicted PhzC/PhzF-type epimerase
          Length = 294

 Score =  144 bits (363), Expect = 2e-35
 Identities = 73/102 (71%), Positives = 82/102 (79%), Gaps = 2/102 (1%)

Query: 4   LIVPFKQVDVFSWTPFKGNPVAVINLIDKEETSVSDEQLQAIATWTNLSETTFLFKPSAG 63
           L+VPFKQVDVF+  PF GNPVAVIN ++ +E  VS E+LQAIA WTNLSETTFLFKPS  
Sbjct: 3   LMVPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFKPS-D 61

Query: 64  SSADYKLRIFTPAGELPFAGHPTVGSCQAFIEFT-NCTKKSL 104
              DYKLRIFTP  ELPFAGHPT+GSC+AF+EFT N T  SL
Sbjct: 62  KKYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSL 103


>At1g03210 [R] KOG3033 Predicted PhzC/PhzF-type epimerase
          Length = 286

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 11 VDVFSWTPFKGNPVAVINLIDKEETSVSDEQLQAIATWTNLSETTFLFKPSAGSSADYKL 70
          VD F+ + FKGNP AV  L D  E    D  LQ++AT  N+SET FL  P  G    ++L
Sbjct: 12 VDAFAESAFKGNPAAVCFLEDDNERD--DAWLQSLATEFNISETCFL-TPIIGDLPRFRL 68

Query: 71 RIFTPAGELPFAGHPTVGS 89
          R FTP  E+   GH T+ S
Sbjct: 69 RWFTPVAEVDLCGHATLAS 87


>At4g02860 [R] KOG3033 Predicted PhzC/PhzF-type epimerase
          Length = 294

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 6  VPFKQVDVFSWTPFKGNPVAVINLIDKEETSVSDEQLQAIATWTNLSETTFLFKPSAGSS 65
          V +  VD F+ + FKGNP AV  L D  E    D  LQ++A   N+SET FL  P  G  
Sbjct: 7  VKYFVVDAFTDSAFKGNPAAVCFLNDDNERD--DTWLQSLAAEFNISETCFLI-PITGFQ 63

Query: 66 ADYKLRIFTPAGELPFAGHPTVGS 89
          A + LR FTP  E+   GH T+ S
Sbjct: 64 ARFSLRWFTPLAEVDLCGHATLAS 87


>CE13124B [R] KOG3033 Predicted PhzC/PhzF-type epimerase
          Length = 316

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 11  VDVFSWTPFKGNPVAVINLIDKEETSVSDEQLQAIATWTNLSETTFLFKPSAGSSADYK- 69
           VD F+   F GNP AV  + +       D++   IA   NLSET F   P    S D+K 
Sbjct: 10  VDAFTTKSFAGNPAAVCLIPEV----FKDQEYLKIAAEFNLSETAF---PVPIGSTDFKT 62

Query: 70  -----LRIFTPAGELPFAGHPTVGSCQA-FIEFTNCTKK 102
                LR FTP  E+P  GH T+ +    F E  N  K+
Sbjct: 63  CSQFSLRWFTPKTEVPLCGHATLATSHVLFNEVGNVNKE 101


>CE13124A [R] KOG3033 Predicted PhzC/PhzF-type epimerase
          Length = 316

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 11  VDVFSWTPFKGNPVAVINLIDKEETSVSDEQLQAIATWTNLSETTFLFKPSAGSSADYK- 69
           VD F+   F GNP AV  + +       D++   IA   NLSET F   P    S D+K 
Sbjct: 10  VDAFTTKSFAGNPAAVCLIPEV----FKDQEYLKIAAEFNLSETAF---PVPIGSTDFKT 62

Query: 70  -----LRIFTPAGELPFAGHPTVGSCQA-FIEFTNCTKK 102
                LR FTP  E+P  GH T+ +    F E  N  K+
Sbjct: 63  CSQFSLRWFTPKTEVPLCGHATLATSHVLFNEVGNVNKE 101


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,752,127
Number of Sequences: 60738
Number of extensions: 253286
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 5
length of query: 111
length of database: 30,389,216
effective HSP length: 87
effective length of query: 24
effective length of database: 25,105,010
effective search space: 602520240
effective search space used: 602520240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)