ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2917 good O KOG2005 Posttranslational modification, protein turnover, chaperones 26S proteasome regulatory complex, subunit RPN1/PSMD2
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2917 1011380 1014334 985
(985 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR027c [O] KOG2005 26S proteasome regulatory complex subunit RP... 1181 0.0
SPBP19A11.03c [O] KOG2005 26S proteasome regulatory complex subu... 485 e-136
Hs20149522 [O] KOG2005 26S proteasome regulatory complex subunit... 429 e-119
At2g20580 [O] KOG2005 26S proteasome regulatory complex subunit ... 412 e-114
CE17253 [O] KOG2005 26S proteasome regulatory complex subunit RP... 367 e-101
At4g28470 [O] KOG2005 26S proteasome regulatory complex subunit ... 365 e-100
7293726 [O] KOG2005 26S proteasome regulatory complex subunit RP... 310 9e-84
ECU04g0310 [O] KOG2005 26S proteasome regulatory complex subunit... 130 1e-29
YIL075c [O] KOG2062 26S proteasome regulatory complex subunit RP... 64 9e-10
ECU02g0480 [O] KOG2062 26S proteasome regulatory complex subunit... 64 2e-09
At4g08140 [O] KOG2005 26S proteasome regulatory complex subunit ... 63 3e-09
SPBC17D11.07c [O] KOG2062 26S proteasome regulatory complex subu... 53 2e-06
>YHR027c [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 993
Score = 1181 bits (3054), Expect = 0.0
Identities = 604/948 (63%), Positives = 726/948 (75%), Gaps = 25/948 (2%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
LV LK DD+SLY SL+ LK+SIKNSTSSMTAVPKPLKFLRP+YP+L S+Y+ WTD L
Sbjct: 52 LVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTDPNL 111
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEK 173
+S LADVLS+L+MTYS++GK+DSL+YRLLS+ + E WGHEY+RHLALEIG+VYN QVEK
Sbjct: 112 KSSLADVLSILAMTYSENGKHDSLRYRLLSDVSDFEGWGHEYIRHLALEIGEVYNDQVEK 171
Query: 174 EADESTPEPDA-----------DFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESID 222
+A++ T + +F+++D + L L IVPYFLKHNGE DAVDLLLEIESID
Sbjct: 172 DAEDETSSDGSKSDGSAATSGFEFSKEDTLRLCLDIVPYFLKHNGEEDAVDLLLEIESID 231
Query: 223 KLPQFVDDTSFTRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDE 282
KLPQFVD+ +F RVCQYMVACVPLL P+DV+FL+T+++IYLS NELT+A+ LA+R+G+E
Sbjct: 232 KLPQFVDENTFQRVCQYMVACVPLLPPPEDVAFLKTAYSIYLSQNELTDAIALAVRLGEE 291
Query: 283 NLVRSVFDATADPVIHKQLAYILSSQRSSFQQEGVQDIIDNVQLSEHFRYLAKELNLLQP 342
+++RSVFDAT+DPV+HKQLAYIL++Q++SF+ EGVQDII N +LSEHF YLAKELNL P
Sbjct: 292 DMIRSVFDATSDPVMHKQLAYILAAQKTSFEYEGVQDIIGNGKLSEHFLYLAKELNLTGP 351
Query: 343 KTPEDIYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIYSKDSNCVYKTK 402
K PEDIYKSHL++SK+ F+ + SAQQNLA VNG+LNLGY +D + + N VYKTK
Sbjct: 352 KVPEDIYKSHLDNSKSVFSSAGLDSAQQNLASSFVNGFLNLGYCNDKLIVDNDNWVYKTK 411
Query: 403 GDGMTSAVASIGSIYQWNLDGLQELDKYLVTEDLEVKAGALLGIGISTCGVHDGEVEPAL 462
GDGMTSAVASIGSIYQWNLDGLQ+LDKYL ++ EVKAGALLGIGIS GVHDGEVEPAL
Sbjct: 412 GDGMTSAVASIGSIYQWNLDGLQQLDKYLYVDEPEVKAGALLGIGISASGVHDGEVEPAL 471
Query: 463 LLLQEYVTNPNVKLSSAAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEVCSMACLSLA 522
LLLQ+YVTNP+ K+SSAAI+GLGIAFAGS NDE+LG LLP+AA T LPIE +MA L+LA
Sbjct: 472 LLLQDYVTNPDTKISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLALA 531
Query: 523 HAFVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVEDVLDTISAI 582
H FVGTCNGDITT+IMDNFLER++ ELKT + F ALALGILYMGQGEQV+DVL+TISAI
Sbjct: 532 HVFVGTCNGDITTSIMDNFLERTAIELKTDWVRFLALALGILYMGQGEQVDDVLETISAI 591
Query: 583 ENPITSAIEVLVNACAYTGTGDVLMIQDLLHRLTPXXXXXXXXXXXXXXXMGDVLPSEIQ 642
E+P+TSAIEVLV +CAYTGTGDVL+IQDLLHRLTP G + I
Sbjct: 592 EHPMTSAIEVLVGSCAYTGTGDVLLIQDLLHRLTPKNVKGEEDADEEETAEGQT--NSIS 649
Query: 643 DSLGLGLQDIP-------GAADTVYNXXXXXXXXXXXXXXXADGSNATNDETKASXXXXX 695
D LG + + + + +G + +E K+
Sbjct: 650 DFLGEQVNEPTKNEEAEIEVDEMEVDAEGEEVEVKAEITEKKNGESLEGEEIKSEEKKGK 709
Query: 696 XXXXXXXXXXXXXXXXXXXXXXXXXXSQAAELAFAVLGIAMIAMGEEIGKEMSLRHFGHL 755
A L A +IA+GE+IGKEMSLRHFGHL
Sbjct: 710 SSDKDATTDGKNDDEEEEKEAGIVDELAYAVLGIA-----LIALGEDIGKEMSLRHFGHL 764
Query: 756 MHYGSDEIRRSVPLAMGLISVSDPQMKVFDTLSRFSHDADLAVSMSSIFSMGLCGAGTNN 815
MHYG++ IRR VPLAMG++SVSDPQMKVFDTL+RFSHDADL VSM+SIF+MGLCGAGTNN
Sbjct: 765 MHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNN 824
Query: 816 XXXXXXXXXXXSYYSKESDALFMTRLSQGLVHLGKGTLSLDIFNDAQVLNKVSLASLLTV 875
SYYS+E DALF+TRL+QGL+HLGKGT+++D+FNDA VLNKV+LAS+LT
Sbjct: 825 ARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVFNDAHVLNKVTLASILTT 884
Query: 876 LVGMMSPEFMLKNHSLFYYLNSATRPKYIVTLDEEGNPIKASVRVGQAVDTVGQAGKPKT 935
VG++SP FMLK+H LFY LN+ RPK+I+ L++EG PIK +VRVGQAV+TVGQAG+PK
Sbjct: 885 AVGLVSPSFMLKHHQLFYMLNAGIRPKFILALNDEGEPIKVNVRVGQAVETVGQAGRPKK 944
Query: 936 ITGWITHSTPVLLGHGERAELETNEYISYTSRIEGVVILKKNPKYTEE 983
ITGWIT STPVLL HGERAELET+EYISYTS IEGVVILKKNP Y EE
Sbjct: 945 ITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 992
>SPBP19A11.03c [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 891
Score = 485 bits (1249), Expect = e-136
Identities = 254/566 (44%), Positives = 368/566 (64%), Gaps = 18/566 (3%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
LV ++ L SL QLK+ I+ STSSMTAVPKPLKFLRP Y LV +Y+SW
Sbjct: 60 LVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQSPQ 119
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEK 173
++ LAD+LSVL M+YS+ K++SLKYRL + WGHEY+RHLA EI + + + E+
Sbjct: 120 KTQLADILSVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEE 179
Query: 174 EADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTSF 233
EA DL+ L+L IVP+FL HN EADA+DLL E+ +I+K+ FV+ +
Sbjct: 180 EAPTD-----------DLMELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNA 228
Query: 234 TRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDENLVRSVFDATA 293
+RVC Y+ +CV LL P+DV+ L+T+ AIY ++LT+ALN+AIR+ D +L++ +A
Sbjct: 229 SRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAAT 288
Query: 294 DPVIHKQLAYILSSQRSSFQQ--EGVQDIIDNVQLSEHFRYLAKELNLLQPKTPEDIYKS 351
DP++ KQ++Y+L+ Q+ E + D ++N LS+HF YL KELNL+ PK PEDI+K+
Sbjct: 289 DPLLKKQMSYMLARQQIPMDMGDEELNDALNNTHLSDHFHYLGKELNLMDPKVPEDIFKT 348
Query: 352 HLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIYSKD---SNCVYKTKGDGMTS 408
HLE ++ + + SA+QNLA VN +N GYS+D + D ++ +YK K G+ S
Sbjct: 349 HLEVARTGLGASGVYSAKQNLANTFVNALVNAGYSNDRLILVDDEKTSWIYKNKESGLIS 408
Query: 409 AVASIGSIYQWNLD-GLQELDKYLVTEDLEVKAGALLGIGISTCGVHDGEVEPALLLLQE 467
A ASIG + WN+D GL LDKYL + + KAGALLGIG++ V + E +PA+ +L E
Sbjct: 409 ATASIGLLQLWNVDMGLSLLDKYLYSSEENTKAGALLGIGVTNVAVRN-EADPAMAILSE 467
Query: 468 YVTNPNVKLSSAAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEVCSMACLSLAHAFVG 527
Y+ +VKL ++AI+GLG+A++G+N ++LL L P+ DT P+++ +A LSL FVG
Sbjct: 468 YLETGSVKLRASAILGLGLAYSGANREDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVG 527
Query: 528 TCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVEDVLDTISAIENPIT 587
TCNGD+ +TI+ +ER + F AL L +L+ G+ + + ++T+ AIE I
Sbjct: 528 TCNGDVASTILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIA 587
Query: 588 SAIEVLVNACAYTGTGDVLMIQDLLH 613
E+LV+ C+Y GTG+VL IQ LLH
Sbjct: 588 RQAEILVDICSYAGTGNVLHIQKLLH 613
Score = 281 bits (719), Expect = 4e-75
Identities = 143/264 (54%), Positives = 193/264 (72%), Gaps = 4/264 (1%)
Query: 722 SQAAELAFAVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQM 781
S+ FA LG+A IAMGE+IG EM LRHF H+MHYG IR+++PLA+GL+S S+PQM
Sbjct: 626 SETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQM 685
Query: 782 KVFDTLSRFSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRL 841
++FDTLSR+SHD DL V+ ++IF+MGL GAGT+N SYY KES+ALFM R+
Sbjct: 686 RIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRI 745
Query: 842 SQGLVHLGKGTLSLDIFN-DAQVLNKVSLASLLTVLVGMMSPE-FML-KNHSLFYYLNSA 898
+QGL++LGKGT++L+ ++ + Q+L + + A L+TV++ M+ F+L +H L Y + A
Sbjct: 746 AQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLA 805
Query: 899 TRPKYIVTLDEEGNPIKASVRVGQAVDTVGQAGKPKTITGWITHSTPVLLGHGERAELET 958
RP+ ++TL E+G + SVRVGQAVD VGQAG+PK ITGW+TH+TPVLL H ERAEL T
Sbjct: 806 IRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELAT 865
Query: 959 NEYISYTSRIEGVVILKKNPKYTE 982
Y TS +EG+VILKKN + E
Sbjct: 866 EAYTPLTS-LEGIVILKKNTEDIE 888
>Hs20149522 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 908
Score = 429 bits (1103), Expect = e-119
Identities = 223/569 (39%), Positives = 354/569 (62%), Gaps = 22/569 (3%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
LV L DTSLY +L++L+ I++ST+SMT+VPKPLKFLRP Y +L +YE+ +
Sbjct: 59 LVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGEN 118
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEK 173
+ AD++SVL+MT S G+ + LKYRL+ +++ + SWGHEY+RHLA E+ + + +
Sbjct: 119 KRFAADIISVLAMTMS--GERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDA 176
Query: 174 EADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTSF 233
E + P L++L +IVPY + HN E +A DLL+EIE +D L + +D+ ++
Sbjct: 177 EKVQREP----------LLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAY 226
Query: 234 TRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDENLVRSVFDATA 293
+VC Y+ +CV + P++ + L+ + ++ + EAL LA+ + D LV +F +
Sbjct: 227 AKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCK 286
Query: 294 DPVIHKQLAYILSSQ-------RSSFQQEGVQDIIDNVQLSEHFRYLAKELNLLQPKTPE 346
D V+ KQ+A++L + E + +I+ NVQL+ +F LA+EL++++PK P+
Sbjct: 287 DVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPD 346
Query: 347 DIYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIYSKDSN-CVYKTKGDG 405
DIYK+HLE+++ + + + SA+ NLA VNG++N + D + + D N +YK K G
Sbjct: 347 DIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHG 406
Query: 406 MTSAVASIGSIYQWNLDG-LQELDKYLVTEDLEVKAGALLGIGISTCGVHDGEVEPALLL 464
M SA AS+G I W++DG L ++DKYL + + +K+GALL GI GV + E +PAL L
Sbjct: 407 MLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRN-ECDPALAL 465
Query: 465 LQEYVTNPNVKLSSAAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEVCSMACLSLAHA 524
L +YV + + + +I GLG+A+AGSN +++L LLPV D+ +EV + L+
Sbjct: 466 LSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMI 525
Query: 525 FVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVEDVLDTISAIEN 584
VG+CNGD+T+TI+ +E+S ELK Y + L LG+ ++G+GE +E +L + +
Sbjct: 526 AVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSE 585
Query: 585 PITSAIEVLVNACAYTGTGDVLMIQDLLH 613
P S LV+ CAY G+G+VL +Q LLH
Sbjct: 586 PFRSFANTLVDVCAYAGSGNVLKVQQLLH 614
Score = 281 bits (720), Expect = 3e-75
Identities = 146/259 (56%), Positives = 189/259 (72%), Gaps = 3/259 (1%)
Query: 725 AELAFAVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQMKVF 784
A AVLGIA+IAMGEEIG EM+LR FGHL+ YG +RR+VPLA+ LISVS+P++ +
Sbjct: 648 AHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNIL 707
Query: 785 DTLSRFSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRLSQG 844
DTLS+FSHDAD VS SIF+MG+ G+GTNN Y++K+ + LFM RL+QG
Sbjct: 708 DTLSKFSHDADPEVSYYSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQG 767
Query: 845 LVHLGKGTLSL-DIFNDAQVLNKVSLASLLTVLVGMMSPEFML--KNHSLFYYLNSATRP 901
L HLGKGTL+L +D Q++++V++A LLTVLV + ++ K+H + Y L +A +P
Sbjct: 768 LTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQP 827
Query: 902 KYIVTLDEEGNPIKASVRVGQAVDTVGQAGKPKTITGWITHSTPVLLGHGERAELETNEY 961
+ +VT DEE P+ SVRVGQAVD VGQAGKPKTITG+ TH+TPVLL HGERAEL T E+
Sbjct: 828 RMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEF 887
Query: 962 ISYTSRIEGVVILKKNPKY 980
+ T +EG VIL+KNP Y
Sbjct: 888 LPVTPILEGFVILRKNPNY 906
>At2g20580 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 893
Score = 412 bits (1060), Expect = e-114
Identities = 228/580 (39%), Positives = 346/580 (59%), Gaps = 35/580 (6%)
Query: 55 VSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKLQ 114
V ++ + L +L+ ++ I+ STSSMT+VPKPLKFLRP Y L + +E+ D L+
Sbjct: 54 VERVQDPNPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLK 113
Query: 115 SLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEKE 174
L+D+LSVL++T S DG+ +SL++RL+ E +I SWGHEY+R+LA EI Y K+ +E
Sbjct: 114 KYLSDILSVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEE 173
Query: 175 ADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTSFT 234
A + DL+ L QIV + +KHN E +AVDLL+++E +D L + VD T+F
Sbjct: 174 A-----------SIDDLMELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFK 222
Query: 235 RVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDENLVRSVFDATAD 294
R C Y+ + L PDD+ L S+ IY+ E AL +A+ + + V+ VF + D
Sbjct: 223 RTCNYLTSAARYLPGPDDMLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTD 282
Query: 295 PVIHKQLAYILSSQRSSFQ-----------QEGVQDIIDNVQLSEHFRYLAKELNLLQPK 343
+ KQ Y+++ +F+ +E +QDI++N +LSE + LA+++ +++ K
Sbjct: 283 LLKKKQFCYMIARHGITFELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAK 342
Query: 344 TPEDIYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYS--------SDSIYSKDS 395
TPEDIYK+HL +AS + S+ SA+QNLA VN ++N G+ SDS
Sbjct: 343 TPEDIYKAHLLDGRAS-SGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTGSSG 401
Query: 396 NCVYKTKGDGMTSAVASIGSIYQWNLD-GLQELDKYLVTEDLEVKAGALLGIGISTCGVH 454
N ++K K G TSA AS+G I W++D GL +LDKY + D + AGALLG+GI CG+
Sbjct: 402 NWLFKNKEHGKTSAAASLGMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIK 461
Query: 455 DGEVEPALLLLQEYVTNPNVKLSSAAIMGLGIAFAGSNNDELL--GTLLPVAADTSLPIE 512
+ + +PAL LL +Y+ + + AIMGLGI++AGS ND++L L P+ D P++
Sbjct: 462 N-DCDPALALLGDYIDKEDSSVRIGAIMGLGISYAGSQNDQVLIRNKLSPILNDAKAPLD 520
Query: 513 VCSMACLSLAHAFVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQV 572
V + A LSL +VG+CN ++ +I+ ++RS EL T F L LG+LY+G+ E V
Sbjct: 521 VIAFASLSLGMIYVGSCNEEVAQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESV 580
Query: 573 EDVLDTISAIENPITSAIEVLVNACAYTGTGDVLMIQDLL 612
E + I ++ + +CAY GTG+VL +QDLL
Sbjct: 581 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQDLL 620
Score = 252 bits (643), Expect = 2e-66
Identities = 130/257 (50%), Positives = 177/257 (68%), Gaps = 3/257 (1%)
Query: 730 AVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQMKVFDTLSR 789
AVLG+AM+AM EE+G +M +R ++ YG IRR+VPLA+GL+ +S+P++ V DTLSR
Sbjct: 637 AVLGLAMVAMSEELGVDMEIRSLERMLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSR 696
Query: 790 FSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRLSQGLVHLG 849
SHD D V+MS+I S+GL GAGTNN SYY K+ LF R++QGLVH+G
Sbjct: 697 LSHDTDSEVAMSAIISLGLIGAGTNNARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMG 756
Query: 850 KGTLSLDIFNDAQ-VLNKVSLASLLTVLVGM--MSPEFMLKNHSLFYYLNSATRPKYIVT 906
KG L+L F+ + +L+ +LA ++T+L M P + K H + Y+L A +P+ ++T
Sbjct: 757 KGLLTLSPFHSERFLLSPTALAGIVTLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLT 816
Query: 907 LDEEGNPIKASVRVGQAVDTVGQAGKPKTITGWITHSTPVLLGHGERAELETNEYISYTS 966
+DE P+ VRVGQAVD VGQAG+PKTITG+ THSTPVLL GERAEL T++YI +
Sbjct: 817 VDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATDKYIPLSP 876
Query: 967 RIEGVVILKKNPKYTEE 983
+EG +ILK+NP Y EE
Sbjct: 877 ILEGFIILKENPDYREE 893
>CE17253 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 981
Score = 367 bits (941), Expect = e-101
Identities = 207/581 (35%), Positives = 332/581 (56%), Gaps = 36/581 (6%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
LV L DT+LY SL+ ++ I+ ST+SMT+VPKPLKF+RP Y ++ ++ S +
Sbjct: 47 LVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPHYNKMKEIFTSIVAPDV 106
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEK 173
+ L AD++SVL+MT D + D++ YR+L + + I WGHEY+RHLA+E+ + + K
Sbjct: 107 KKLCADIISVLAMT--SDERTDTINYRILGSHEPIGDWGHEYVRHLAMEMSEEWKK---- 160
Query: 174 EADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTSF 233
E +D + +L+ L+ IV + +KHN E +A DLL+EIE ID L +V +
Sbjct: 161 -------EGTSDARKAELLKLTQDIVSHHMKHNAEVEACDLLIEIERIDLLISYVQEVDH 213
Query: 234 TRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDENLVRSVFDATA 293
RVC Y+++C PL PD++ ++T+ +YL N EA+ AI + D V +F +
Sbjct: 214 QRVCLYLLSCAPLTPDPDNIILIRTALQLYLKFNRYLEAVRCAIMVNDIPQVHQIFAKAS 273
Query: 294 DPVIHKQLAYILSSQRSSFQQEGVQD------IIDNVQLSEHFRYLAKELNLLQPKTPED 347
DP++ KQ+A +L + EG D + N L E+F LA+EL++++PKTPE
Sbjct: 274 DPLLRKQMAILLGRHQIFLDYEGSADSDALAELNSNAHLYEYFHSLARELDIMEPKTPEG 333
Query: 348 IYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIYSKD---SNCVYKTKGD 404
IYKSHLE S+ N S + NLA +VNG++N G+ D + ++ S YK K
Sbjct: 334 IYKSHLEHSRPFGNSAQPDSTRMNLAAALVNGFVNCGFGVDKMMAETEEASRWFYKNKEY 393
Query: 405 GMTSAVASIGSIYQWNLD-GLQELDKYLVTEDLEVKAGALLGIGISTCGVHDGEVEPALL 463
GM +A AS G I++W++D GL + D++L D +KAG LL IGI + G+ D +PA
Sbjct: 394 GMLTAAASQGLIWRWDIDTGLAQCDRFLYINDDYIKAGTLLAIGIISSGIQDA-CDPASA 452
Query: 464 LLQEYVTNPNVKLSSAAIMGLGIAFAGSNNDEL-----------LGTLLPVAADTSLPIE 512
LL ++V + + +I+GLG+A+A S + + L +L +++P E
Sbjct: 453 LLLDHVQSDRSIMRVGSILGLGLAYANSKRETVTKNEERGVIFELKKVLSDQKPSAIP-E 511
Query: 513 VCSMACLSLAHAFVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQV 572
V +A LSL VGT + + ++ +++S EL F AL + ++++ ++
Sbjct: 512 VKGLAGLSLGLILVGTADAEAAMEMLQALMDKSETELTDPNMRFLALGIALIFLQTQDKS 571
Query: 573 EDVLDTISAIENPITSAIEVLVNACAYTGTGDVLMIQDLLH 613
+ ++++ ++ +P + + LV CAY GTG+VL IQ LLH
Sbjct: 572 DVFVESLRSLPDPFGAMVSTLVEVCAYAGTGNVLKIQKLLH 612
Score = 254 bits (650), Expect = 4e-67
Identities = 135/267 (50%), Positives = 187/267 (69%), Gaps = 10/267 (3%)
Query: 724 AAELAFAVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQMKV 783
+++ A AVLGI +IAMG++IG +M+LR FGHL+ YG IRR+VPLA+ L+SVS+PQ+ +
Sbjct: 706 SSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYGEPVIRRAVPLALSLLSVSNPQLNI 765
Query: 784 FDTLSRFSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRLSQ 843
+TLS+FSHD+D + ++IF+MGL GAGTNN SY+ K+ +L + R++Q
Sbjct: 766 LETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLASYHYKDQVSLMLVRIAQ 825
Query: 844 GLVHLGKGTLSLDIF-NDAQVLNKVSLASLLTVLVGMMSPEFMLKN---HSLFYYLNSAT 899
GL HLGKGT++L+ + +D Q+L+ +LASLL++ + + N H L Y L A
Sbjct: 826 GLTHLGKGTMTLNPWHSDRQLLSPSALASLLSICFSFLDANNTILNNRQHYLLYTLVLAM 885
Query: 900 RPKYIVTL-DEEGNP-----IKASVRVGQAVDTVGQAGKPKTITGWITHSTPVLLGHGER 953
+P+ + TL ++E P + SVRVGQAVD V QAGKPKTITG+ TH+TPVLL HGER
Sbjct: 886 QPRMLTTLVEDEMKPGSLKQLNVSVRVGQAVDVVAQAGKPKTITGFQTHTTPVLLAHGER 945
Query: 954 AELETNEYISYTSRIEGVVILKKNPKY 980
AEL +EY+S T +EG+VILKKNP Y
Sbjct: 946 AELANDEYLSVTPHLEGLVILKKNPDY 972
>At4g28470 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 1103
Score = 365 bits (937), Expect = e-100
Identities = 222/618 (35%), Positives = 337/618 (53%), Gaps = 89/618 (14%)
Query: 69 SLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKLQSLLADVLSVLSMTY 128
+L+ ++ I++STSSMT+VPKPLKFLRP Y L + + L+ +LAD+LSVL++T
Sbjct: 68 ALESMRKEIRDSTSSMTSVPKPLKFLRPHYGVLKEFHAKMAESDLKKMLADILSVLALTM 127
Query: 129 SDDGK--------------------------YDSLKYRLLSNEKNIESWGHEYMRHLALE 162
S +G+ +SL YRL +E +I SWGHEY+R+LA E
Sbjct: 128 SAEGERICVLWFLVEFDLSYLLLILCYAILFQESLNYRLNGSESDIGSWGHEYVRNLAGE 187
Query: 163 IGDVYNKQVEKEADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESID 222
I Y ++ +ES+ E DL+ L QIV + +KHN E +AVDLL+++E +D
Sbjct: 188 IAKEYTI---RQGEESSIE--------DLMDLVQQIVSFHMKHNAETEAVDLLMDVEDLD 236
Query: 223 KLPQFVDDTSFTRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDE 282
L + VD+T+F R C Y+ + L PDD+ L ++ IY+ E AL +A+ + +
Sbjct: 237 LLLEHVDNTNFRRTCNYLTSAAKYLPGPDDMLVLDIAYMIYIKFAEYPNALQIALFLDNM 296
Query: 283 NLVRSVFDATADPVIHKQLAYILSSQRSSFQ-----------QEGVQDIIDNVQLSEHFR 331
V+ VF + D V KQ Y+++ +F+ +E +QDI++N +LSE +
Sbjct: 297 QYVKQVFTSCTDLVKKKQFCYMIARHGMTFELDQEMVANDEDKEALQDIVNNSKLSEGYL 356
Query: 332 YLAKELNLLQPKTPEDIYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYS----- 386
LA+++ +++ KTPEDIYK+HL +AS + S+ SA+QNL+ VN ++N G+
Sbjct: 357 TLARDIEVMEAKTPEDIYKAHLLDGRAS-SGPSVDSARQNLSATFVNAFVNAGFGQDKLM 415
Query: 387 ---SDSIYSKDSNCVYKTKGDGMTSAVASI-----------------GSIYQWNLD-GLQ 425
SDS N ++K K G TSAVAS+ G I W+++ GL
Sbjct: 416 TVPSDSTSGSAGNWLFKNKEHGKTSAVASLVYLILLDKLISYVFILEGMIQLWDVETGLG 475
Query: 426 ELDKYLVTEDLEVKAGALLGIGISTCGVHDGEVEPALLLLQEYVTNPNVKLSSAAIMGLG 485
LDKY + D V AGALLG+GI CG+ + + +PA LL Y+ N + + AIMGLG
Sbjct: 476 HLDKYFHSNDNPVVAGALLGVGIVNCGIKN-DCDPAFALLSGYIDNEDSSVRIGAIMGLG 534
Query: 486 IAFAGSNNDELLGTLLPVAADTSLPIEVCSMACLSLAHAFVGTCNGDITTTIMDNFLERS 545
IA+AGS ND++ L P+ D + P++V + A LSL +VG+CN ++ +I+ ++RS
Sbjct: 535 IAYAGSQNDQIKIRLSPILNDANAPLDVIAFAALSLGMIYVGSCNEEVAQSIIFALMDRS 594
Query: 546 SEELKTHYTNFFALALGILYMGQ-------------GEQVEDVLDTISAIENPITSAIEV 592
EL T F L LG+LY+G+ E VE + I ++
Sbjct: 595 EAELGEALTRFLPLGLGLLYLGKQVGSQSYLIIFLVRESVEATAEVSKTFNEKIRKYCDM 654
Query: 593 LVNACAYTGTGDVLMIQD 610
+ +CAY GTG+VL + D
Sbjct: 655 TLLSCAYAGTGNVLKVSD 672
Score = 188 bits (478), Expect = 3e-47
Identities = 108/267 (40%), Positives = 152/267 (56%), Gaps = 34/267 (12%)
Query: 730 AVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQMKVFDTLSR 789
AV+G+AM+AM EE+G +M +R ++ YG IRR+VPLA+GL+ +S+P++ V DTLSR
Sbjct: 707 AVIGLAMVAMSEELGLDMEIRSLERVLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSR 766
Query: 790 FSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRLSQGLVHL- 848
SHD D V+M++I S+GL GAGTNN SYY K++ LF +
Sbjct: 767 LSHDTDSEVAMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKDASLLFCVTFYDFFLSFH 826
Query: 849 ------------------------------GKGTLSLDIFNDAQVL-NKVSLASLLTVLV 877
GKG+L+ F L +LA ++T+L
Sbjct: 827 GINTVSTYDRLVLIVLSHNAGAHRSRVCAYGKGSLNSQSFPLRTALAMPTALAGIVTLLH 886
Query: 878 GMMSPEFML--KNHSLFYYLNSATRPKYIVTLDEEGNPIKASVRVGQAVDTVGQAGKPKT 935
+ + ++ K H + Y+L A +P+ ++T+D+ PI VRVGQAVD VGQAG+PKT
Sbjct: 887 ACLDMKSIILGKYHYVLYFLVLAMQPRMMLTVDQSLKPISVPVRVGQAVDVVGQAGRPKT 946
Query: 936 ITGWITHSTPVLLGHGERAELETNEYI 962
ITG+ THSTPVLL GERAEL T +Y+
Sbjct: 947 ITGFQTHSTPVLLAAGERAELATEKYV 973
>7293726 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 609
Score = 310 bits (793), Expect = 9e-84
Identities = 169/410 (41%), Positives = 255/410 (61%), Gaps = 25/410 (6%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
LV L+ D LY +L+ + I+ ST+SMT+VPKPLKF+RP Y + +VY+ +++
Sbjct: 57 LVQHLQEPDAKLYQPTLESMAKLIRASTTSMTSVPKPLKFMRPHYETMKTVYKHMPNEQA 116
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKN-IESWGHEYMRHLALEIGDVYNKQVE 172
+ L AD++SVLSMT GK D L YR L + K I WGHEY+RHL+ EI Y+
Sbjct: 117 RQLCADIISVLSMTMGS-GK-DCLAYRFLCDRKQRIGDWGHEYVRHLSGEISAHYH---- 170
Query: 173 KEADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTS 232
+ DF Q L+ L QI+PY ++HN EADA DLL+EI+ + L FVD+++
Sbjct: 171 --------DTTGDFRVQ-LIELVKQIIPYNMEHNAEADACDLLIEIDHLHLLSDFVDESA 221
Query: 233 FTRVCQYMVACVPLLAHPDDVSFLQTSFAIYLSHNELTEALNLAIRIGDENLVRSVFDAT 292
+ RVC Y+ +C P + PD+ L+T+ + N+ T+A+ LA+ + D + + +F
Sbjct: 222 YPRVCLYLQSCYPYVPDPDNTIILETALQLSRKFNQYTQAMRLALMLNDMDKIGEIFKEP 281
Query: 293 ADPVIHKQLAYILSSQRSSFQ-------QEGVQDIIDNVQLSEHFRYLAKELNLLQPKTP 345
+P + KQLA++L+ Q+ + + + +I+ N L++HF LA+EL++++PKTP
Sbjct: 282 KEPAMQKQLAFMLARQQICLELDELVPDYDDLMEIMSNANLNKHFLNLARELDIMEPKTP 341
Query: 346 EDIYKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIYSKDSN-CVYKTKGD 404
EDIYKSHL++S++ F + SA+QNLA VNG++N G+ D + S+D N +YK K
Sbjct: 342 EDIYKSHLDNSRSRFASIQVDSAKQNLAASFVNGFVNAGFGVDKLLSEDGNKWLYKNKEH 401
Query: 405 GMTSAVASIGSIYQWNLD-GLQELDKYLVTEDLEVKAGALLGIGISTCGV 453
GM SA AS+G I W++D GL +DKYL + D +K+GALL GI CG+
Sbjct: 402 GMLSATASLGLILLWDVDGGLTMIDKYLYSTDDNIKSGALLACGIVNCGI 451
>ECU04g0310 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 795
Score = 130 bits (327), Expect = 1e-29
Identities = 135/579 (23%), Positives = 250/579 (42%), Gaps = 70/579 (12%)
Query: 54 LVSTLKGDDTSLYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKL 113
+V ++ D + +L+ L D K+S S ++L + L V + +K
Sbjct: 9 IVERIQDPDIDIQNNALNMLFDVTKSSHSKSIDTIN-FQYLADNLDVLEDVCKRLEGNK- 66
Query: 114 QSLLADVLSVLSMTYSDDGKYDSLKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEK 173
+ L D++S + + D + L YR+ N +++ WGH Y++ L I DV N ++
Sbjct: 67 KRWLCDIISAICVV---DDERKLLAYRVEGNIIDLKEWGHLYVKKLIGCIADVKNNKM-- 121
Query: 174 EADESTPEPDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLEIESIDKLPQFVDDTSF 233
DF + + + + KHN E +A+D L+E+ I+ + +VD ++
Sbjct: 122 -----------DFPFAKTRDVGRECIDFLFKHNAEFEAIDFLVEVGGIETVLDYVDTHNY 170
Query: 234 TRVCQYMVACVPLLAHPDDVSFL---QTSFAIYLSHNELTEALNLAIRIGDENLVRSVFD 290
R+ Y+ D SF+ + IYL + + + IR
Sbjct: 171 NRIVLYL---------EDMNSFVDLEEVILKIYLKMGDHSRYVVGLIRRQKSKEAIEYVR 221
Query: 291 ATADPVIHKQLAYILSSQRSSFQQEGVQD--IIDNVQLSEHFRYLAKELNLLQPKTPEDI 348
+ D KQ YIL+ ++ ++ I+ N + + +R + EL + +P + I
Sbjct: 222 SIEDRDYKKQCLYILARCNLYYEASDPEEKYILSNGYIKDVYREIGAELEIDKPSKMDAI 281
Query: 349 YKSHLESSKASFNKTSMSSAQQNLAEFMVNGWLNLGYSSDSIY---------SKDSNCVY 399
K ++K + A +A NG++++GY D I+ D +
Sbjct: 282 LKGF------KYDKDTRQLASIGIA----NGFVHMGYGRDPIFLPQEGDSRVPLDYEAIL 331
Query: 400 KTKGDGMTSAVASIGSIYQWNLDGLQE-LDKYLVTEDLEVKAGALLGIGISTCGVHDGEV 458
+ S SIG I WN + + E L +++ + K G+LLG+ +S G+ + E
Sbjct: 332 GCDVPDLISVFGSIGVIESWNSEKVMETLQEHIFADFSYRKTGSLLGLALS--GLRNFEE 389
Query: 459 EPALLLLQEYVTNPNVKLSS-----AAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEV 513
PA+L L + N++ SS A ++G+ F+G+ +E+ L P+ S EV
Sbjct: 390 RPAILAL----LSNNLQSSSSIHVIATLLGIEAMFSGTQAEEVRELLQPLMFSDS--SEV 443
Query: 514 CSMACLSLAHAFVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVE 573
+L F G+ + D+T+ ++ F+E+ E +T + F L L L+ + +
Sbjct: 444 VFFTSFTLGSVFCGSADEDLTSLMLQTFVEKGKES-ETQFFRFLMLGLASLFYRR----K 498
Query: 574 DVLDTISAIENPITSAIEVLVNACAYTGTGDVLMIQDLL 612
DV I I ++ +L+ Y GTGD +I+ +L
Sbjct: 499 DVECGIMEIGGALSKHESILIKGFQYVGTGDSNVIESIL 537
Score = 125 bits (314), Expect = 3e-28
Identities = 82/254 (32%), Positives = 132/254 (51%), Gaps = 13/254 (5%)
Query: 728 AFAVLGIAMIAMGEEIGKEMSLRHFGHLMHYGSDEIRRSVPLAMGLISVSDPQMKVFDTL 787
+ +L A+++MG+E +M R + S +R +PL ++ S+PQ+ V D L
Sbjct: 551 SLGLLSCALVSMGDETSSQMVGRIVSSSLLLDSSHLRSVLPLCYSILYPSNPQVNVLDML 610
Query: 788 SRFSHDADLAVSMSSIFSMGLCGAGTNNXXXXXXXXXXXSYYSKESDALFMTRLSQGLVH 847
+ + + +S+I S+GL GAGT N SYY K+S L + +++QGLV
Sbjct: 611 EKSLNIGETNCIISTIVSLGLIGAGTLNSRITKILDQQYSYYYKDSKVLPVLKIAQGLVS 670
Query: 848 LGKGTLSLD-IFNDAQVL---NKVSLASLLTVLVGMMSPEFMLKNHSLFYYLNSATRPKY 903
LGKG LS+ ++ D N + L S + +L+ + + +F+ L A KY
Sbjct: 671 LGKGLLSISPLYFDKTTFMPKNTIGLFSTVFMLLDSSISPLVSSHAYMFFLLCQACTQKY 730
Query: 904 IVTLDEEGNPIKASVRVGQAVDTVGQAGKPKTITGWITHSTPVLLGHGERAELETNEYIS 963
+ + K ++RVG ++TVG G+PK ++ TH++PV+L RAE + N S
Sbjct: 731 VTCSE------KINIRVGHPINTVGMVGEPKKLSSVQTHTSPVVLSEKIRAETDENVCSS 784
Query: 964 YTSRIEGVVILKKN 977
Y IE V+ILKKN
Sbjct: 785 Y---IEDVLILKKN 795
>YIL075c [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 945
Score = 64.3 bits (155), Expect = 9e-10
Identities = 122/579 (21%), Positives = 239/579 (41%), Gaps = 47/579 (8%)
Query: 67 LGSLDQLKDSIKNST--SSMTAVPKPLKFLRPSYPELVSVYE--SWTDDKLQSLLADVLS 122
L L + +DS+K S V + + P++ ++Y+ +++D ++ +L+A
Sbjct: 10 LALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAALIA---- 65
Query: 123 VLSMTYSDDGKYDS-LKYRLLSNEKNIESWGHEYMRHLALEIGDVYNKQVEKEADESTPE 181
S Y + G+Y+S +KY L + ++ +++ + + ++Y ++ K+ +
Sbjct: 66 --SKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQF 123
Query: 182 PDADFNQQDLVSLSLQIVPYFLKHNGEADAVDLLLE------IESIDKLPQFVDDTSFT- 234
D L S+ +++ LK + A+ + LE IES K D TS
Sbjct: 124 YTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENV 183
Query: 235 RVCQYMV--ACVPLLAHPDDVSFLQTSFAIYLS--HNELTEALNLAIRIGDENLVRSVFD 290
++ Y++ A + S L+ SF ++ + + + + + D L +F
Sbjct: 184 KIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFK 243
Query: 291 ATADPVIHKQLAYILSSQRSSFQQEGVQDIIDNVQLSEHFRYLAKELNLLQPKTPEDIYK 350
+ A I SS Q+ ++ ++ + + L LN+L D Y
Sbjct: 244 KLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPAL---LNILSGLPTCDYYN 300
Query: 351 SHLESSK----ASFNKTSMSSAQQ----NLAEFMVNGWLNLGYSSDSIYSKDSNCVYKTK 402
+ L ++K NK+ S + + A + NG+++ G + +S + + K +
Sbjct: 301 TFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQ 360
Query: 403 GDGMTSAVASIGSIYQWNL-DGLQELDKYLVTEDLE---VKAGALLGIGISTCGVHDGEV 458
+A AS+G I++ NL +G + + YL +K G+L G+G+ G
Sbjct: 361 NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTT 420
Query: 459 EPALLLLQEYVTNPNVK----LSSAAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEVC 514
+ ++ E + L A +G+G+A GS N E+ L V + S
Sbjct: 421 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSG-- 478
Query: 515 SMACLSLAHAFVGTCNGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVED 574
A L + +GT + I D F S E + T A+ L ++ G+ E +D
Sbjct: 479 EAAALGMGLCMLGTGKPE---AIHDMFTY-SQETQHGNITRGLAVGLALINYGRQELADD 534
Query: 575 VLDTISAIENPITSAIEVLVNACAYTGTGDVLMIQDLLH 613
++ + A + + A AY GTG+ ++ LLH
Sbjct: 535 LITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH 573
>ECU02g0480 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 786
Score = 63.5 bits (153), Expect = 2e-09
Identities = 63/243 (25%), Positives = 108/243 (43%), Gaps = 7/243 (2%)
Query: 376 MVNGWLNLGYSSDSIYSKDSNCVYKTKGDGMTSAVASIGSIYQWNLDGLQELDKYLVTED 435
+ N +NLG S+D++Y +++ ++ S VASIG I+ +N + + L YL +E
Sbjct: 279 LANSLMNLGTSNDTLYRNNADIFGQSSEWAKFSEVASIGMIHLFNSNPYEILKNYLPSEV 338
Query: 436 LEVKAGALLGIGISTCGVHDGEVEPALLLLQEYVTNPNVKLSSAAIMGLGIAFAGSNNDE 495
+ + GAL+ +G+ G E LL + +L+ +GLG+ GS N E
Sbjct: 339 SQKEGGALMALGLIKAGTFSEEDTEYLLYFLDTEDTLTPELAYGVCLGLGLINMGSANRE 398
Query: 496 LLGTLLPVA-ADTSLPIE--VCSMACLSLAHAFVGTCNGDITTTIMDNFLERSSEELKTH 552
+L L ++ D +L +E V M L L V D+ T + ER +
Sbjct: 399 ILNKLKELSKVDRTLLVEASVYGMGMLGLNSWSVELLE-DLRTIAGETEFERVKRAVGIS 457
Query: 553 YTNFFALALGILYMGQGEQVEDVLDTISAI---ENPITSAIEVLVNACAYTGTGDVLMIQ 609
++ + + Y D + I+ + ++ I A VL A+ GTG + +I
Sbjct: 458 FSLVLMFSEEMFYDECNASNGDFKNYINELLYDKDSIMRANGVLSLGSAFVGTGRLGVIS 517
Query: 610 DLL 612
LL
Sbjct: 518 TLL 520
>At4g08140 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 84
Score = 62.8 bits (151), Expect = 3e-09
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 65 LYLGSLDQLKDSIKNSTSSMTAVPKPLKFLRPSYPELVSVYESWTDDKLQSLLADVLSVL 124
L +L+ ++ I+ TSSMT+VPKPLKFLRP Y L + +E+ D L+ ++D+LSVL
Sbjct: 9 LQKAALESMRQEIRALTSSMTSVPKPLKFLRPQYVTLKAFHETMADSNLKKYISDILSVL 68
Query: 125 SMT 127
++T
Sbjct: 69 ALT 71
>SPBC17D11.07c [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 965
Score = 53.1 bits (126), Expect = 2e-06
Identities = 84/444 (18%), Positives = 175/444 (38%), Gaps = 50/444 (11%)
Query: 196 LQIVPYFLKHNGEAD--------AVDLLLEIESIDKLPQFVDDTSFTRVCQYMVACVPLL 247
L I+ Y L + E D A+ ++L+IE ++L + + + T + +
Sbjct: 168 LDIIEYILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCV 227
Query: 248 AHPDDVSFLQTSFAIYLSHNE---LTEALNLAIRIGD---ENLVRSVFDATADPVIHKQL 301
H +D S S N+ L A LA + D + + SV D P +
Sbjct: 228 VHLNDASVAAKLLMKLSSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV---- 283
Query: 302 AYILSSQRSSFQQEGVQDIIDNVQLSEHFRYLAKELNLLQP-KTPEDIYKSHLESSKASF 360
+S+ + +D S Y+ + L+ Q K + +H +
Sbjct: 284 ---ANSEEDANADSKKED-------SSPCGYIIRILSGEQTVKYDREFLYAHNNTDMLIL 333
Query: 361 NKTSMSSAQQNL----AEFMVNGWLNLGYSSDSIYSKDSNCVYKTKGDGMTSAVASIGSI 416
N+T S +N A N ++N G SSDS + + + + K +A A++G I
Sbjct: 334 NRTKDSLEARNSVFHNAVTFANAFMNFGTSSDSFFRDNLSWLSKANNWSKFTATAALGVI 393
Query: 417 YQ-WNLDGLQELDKYLVTEDLEVKA-----GALLGIGISTCGVHDGEVEPALLLLQEYVT 470
++ + + L YL ED + GA +G+ +H L+E +
Sbjct: 394 HRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFYAMGL----IHANHGRGVTEYLREQLK 449
Query: 471 NPNVKLSS-AAIMGLGIAFAGSNNDELLGTLLPVAADTSLPIEVCSMACLSLAHAFVGTC 529
+ ++ ++G+G+ S ++ L ++ + + + S A +S+ +GT
Sbjct: 450 HTEDEIVQYGLLLGIGLTGMASRDETLYESVKTILFNDNAVAG--SAAGISMGLIMLGTA 507
Query: 530 NGDITTTIMDNFLERSSEELKTHYTNFFALALGILYMGQGEQVEDVLDTISAIENPITSA 589
+ + +D L+ + E + + ++ G+ ++ + ++ ++ +P
Sbjct: 508 S----SAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLRY 563
Query: 590 IEVLVNACAYTGTGDVLMIQDLLH 613
+ A AY GT + +++D+LH
Sbjct: 564 AGMFATALAYCGTSNSKIVRDVLH 587
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,005,121
Number of Sequences: 60738
Number of extensions: 2000757
Number of successful extensions: 5533
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5429
Number of HSP's gapped (non-prelim): 35
length of query: 985
length of database: 30,389,216
effective HSP length: 116
effective length of query: 869
effective length of database: 23,343,608
effective search space: 20285595352
effective search space used: 20285595352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)