ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2969.1 good J KOG1779 Translation, ribosomal structure and biogenesis 40s ribosomal protein S27
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2969.1 1031293 1031520 76
(76 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR021c [J] KOG1779 40s ribosomal protein S27 154 2e-38
YKL156w [J] KOG1779 40s ribosomal protein S27 154 3e-38
SPBC1685.10 [J] KOG1779 40s ribosomal protein S27 121 2e-28
Hs4506711 [J] KOG1779 40s ribosomal protein S27 120 3e-28
Hs7705706 [J] KOG1779 40s ribosomal protein S27 119 7e-28
7301299 [J] KOG1779 40s ribosomal protein S27 118 1e-27
At3g61110 [J] KOG1779 40s ribosomal protein S27 117 2e-27
At2g45710 [J] KOG1779 40s ribosomal protein S27 117 2e-27
At5g47930 [J] KOG1779 40s ribosomal protein S27 116 6e-27
CE19904 [J] KOG1779 40s ribosomal protein S27 106 7e-24
Hs18576392 [J] KOG1779 40s ribosomal protein S27 56 1e-08
ECU04g1015 [J] KOG1779 40s ribosomal protein S27 53 7e-08
Hs22063207 [J] KOG1779 40s ribosomal protein S27 53 9e-08
Hs18555322 [J] KOG1779 40s ribosomal protein S27 50 6e-07
Hs22059251 [J] KOG1779 40s ribosomal protein S27 48 2e-06
Hs22055385 [J] KOG1779 40s ribosomal protein S27 34 0.041
CE28135 [K] KOG2845 Activating signal cointegrator 1 27 5.0
7301606 [R] KOG2503 Tubby superfamily protein TULP4 27 6.6
Hs7662048 [V] KOG1841 Smad anchor for receptor activation 26 8.6
>YHR021c [J] KOG1779 40s ribosomal protein S27
Length = 82
Score = 154 bits (389), Expect = 2e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHPTAASEARKHKLKTLVQ PRS+FLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP
Sbjct: 7 LLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKAKLSEGTSFRRK
Sbjct: 67 TGGKAKLSEGTSFRRK 82
>YKL156w [J] KOG1779 40s ribosomal protein S27
Length = 82
Score = 154 bits (388), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (97%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHPTAASEARKHKLKTLVQ PRS+FLDVKCPGCLNITTVFSHAQTAVTCESCST+LCTP
Sbjct: 7 LLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKAKLSEGTSFRRK
Sbjct: 67 TGGKAKLSEGTSFRRK 82
>SPBC1685.10 [J] KOG1779 40s ribosomal protein S27
Length = 83
Score = 121 bits (303), Expect = 2e-28
Identities = 56/76 (73%), Positives = 63/76 (82%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+L+P+ SE RKHKLK LVQ PRS F+DVKCPGC NITTVFSHAQT V C SC++VLC P
Sbjct: 7 LLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKA+L EG SFRRK
Sbjct: 67 TGGKARLMEGCSFRRK 82
>Hs4506711 [J] KOG1779 40s ribosomal protein S27
Length = 84
Score = 120 bits (301), Expect = 3e-28
Identities = 55/76 (72%), Positives = 61/76 (79%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHP+ E RKHK K LVQSP S+F+DVKCPGC ITTVFSHAQT V C CSTVLC P
Sbjct: 7 LLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKA+L+EG SFRRK
Sbjct: 67 TGGKARLTEGCSFRRK 82
>Hs7705706 [J] KOG1779 40s ribosomal protein S27
Length = 84
Score = 119 bits (298), Expect = 7e-28
Identities = 54/76 (71%), Positives = 61/76 (80%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHP+ E +KHK K LVQSP S+F+DVKCPGC ITTVFSHAQT V C CSTVLC P
Sbjct: 7 LLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKA+L+EG SFRRK
Sbjct: 67 TGGKARLTEGCSFRRK 82
>7301299 [J] KOG1779 40s ribosomal protein S27
Length = 84
Score = 118 bits (296), Expect = 1e-27
Identities = 53/76 (69%), Positives = 60/76 (78%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHP A E RKHKLK LVQ P S+F+DVKCPGC ITTVFSHAQ V C C+T+LC P
Sbjct: 7 LLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQGVVVCAGCATILCQP 66
Query: 61 TGGKAKLSEGTSFRRK 76
TGG+AKL+EG SFRRK
Sbjct: 67 TGGRAKLTEGCSFRRK 82
>At3g61110 [J] KOG1779 40s ribosomal protein S27
Length = 86
Score = 117 bits (294), Expect = 2e-27
Identities = 54/76 (71%), Positives = 61/76 (80%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+L+P A E RKHKLK LVQSP S F+DVKC GC NITTVFSH+QT V C +C T+LC P
Sbjct: 9 LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQP 68
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKAKL+EG SFRRK
Sbjct: 69 TGGKAKLTEGCSFRRK 84
>At2g45710 [J] KOG1779 40s ribosomal protein S27
Length = 84
Score = 117 bits (294), Expect = 2e-27
Identities = 54/76 (71%), Positives = 62/76 (81%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+L+P A E RKHKLK LVQSP S F+DVKC GC NITTVFSH+QT V C +C T+LCTP
Sbjct: 9 LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTP 68
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKAKL+EG SFR+K
Sbjct: 69 TGGKAKLTEGCSFRKK 84
>At5g47930 [J] KOG1779 40s ribosomal protein S27
Length = 84
Score = 116 bits (290), Expect = 6e-27
Identities = 53/76 (69%), Positives = 59/76 (76%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHP E RKHKLK LVQSP S F+DVKC GC NITTVFSH+QT V C +C TVLC P
Sbjct: 9 LLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP 68
Query: 61 TGGKAKLSEGTSFRRK 76
TGGKA+L EG SFR+K
Sbjct: 69 TGGKARLQEGCSFRKK 84
>CE19904 [J] KOG1779 40s ribosomal protein S27
Length = 83
Score = 106 bits (264), Expect = 7e-24
Identities = 49/76 (64%), Positives = 56/76 (73%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTP 60
+LHP E R HKLK LVQ P S+F+DVKC GC I+TVFSHA T V C C+TVLC P
Sbjct: 7 LLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQP 66
Query: 61 TGGKAKLSEGTSFRRK 76
T GKAKL+EG SFR+K
Sbjct: 67 TRGKAKLTEGCSFRKK 82
>Hs18576392 [J] KOG1779 40s ribosomal protein S27
Length = 97
Score = 55.8 bits (133), Expect = 1e-08
Identities = 30/72 (41%), Positives = 37/72 (50%)
Query: 4 PTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGG 63
PT K K SP S+ +DV+CPGC + +VF HA AV CS L G
Sbjct: 20 PTQHQAEMKEPKKHSGLSPNSYCIDVRCPGCDTVASVFGHAHIAVLGVECSATLSQFAEG 79
Query: 64 KAKLSEGTSFRR 75
KA+L+EG S R
Sbjct: 80 KARLTEGCSSDR 91
>ECU04g1015 [J] KOG1779 40s ribosomal protein S27
Length = 85
Score = 53.1 bits (126), Expect = 7e-08
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 4 PTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGG 63
PT +K L + F+ V+C GC + T +SH+QT ++C C ++ T +GG
Sbjct: 8 PTREKVGSTYKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGG 67
Query: 64 KAKLSEGTSFRR 75
+A +S F++
Sbjct: 68 RAVVSPNCEFKK 79
>Hs22063207 [J] KOG1779 40s ribosomal protein S27
Length = 114
Score = 52.8 bits (125), Expect = 9e-08
Identities = 30/64 (46%), Positives = 38/64 (58%), Gaps = 3/64 (4%)
Query: 9 EARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLS 68
+ R+ K + QS RS+F+DVK PGC IT VFSH + S LC TGGKA+ +
Sbjct: 11 QKRRPKQQHPGQSLRSYFMDVKYPGCYKITMVFSHKRVLAAPPSS---LCQRTGGKARPT 67
Query: 69 EGTS 72
EG S
Sbjct: 68 EGRS 71
>Hs18555322 [J] KOG1779 40s ribosomal protein S27
Length = 141
Score = 50.1 bits (118), Expect = 6e-07
Identities = 22/36 (61%), Positives = 27/36 (74%)
Query: 9 EARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHA 44
E RKHK K +VQS S+F+DVKCPGC ITT S++
Sbjct: 20 EKRKHKKKCVVQSLNSYFMDVKCPGCYKITTAVSNS 55
>Hs22059251 [J] KOG1779 40s ribosomal protein S27
Length = 205
Score = 48.1 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MLHPTAASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCES 52
+LHP++ E R+HK K LVQS S+F+ VKC IT +FSHA V E+
Sbjct: 7 ILHPSSKKEEREHK-KCLVQSSSSYFVVVKCSRYCKITMIFSHAPMVVVSEN 57
>Hs22055385 [J] KOG1779 40s ribosomal protein S27
Length = 232
Score = 33.9 bits (76), Expect = 0.041
Identities = 13/23 (56%), Positives = 18/23 (77%)
Query: 11 RKHKLKTLVQSPRSHFLDVKCPG 33
+K K K LVQ+P S+ +D+KCPG
Sbjct: 18 KKIKKKQLVQNPNSYLMDIKCPG 40
>CE28135 [K] KOG2845 Activating signal cointegrator 1
Length = 425
Score = 26.9 bits (58), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 7 ASEARKHKLKTLVQSPRSHFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCT 59
A RK + + L Q+ R+H L + C GC I + + C +C T++CT
Sbjct: 28 ADTLRKGRHECLCQA-RTHKLILNCLGCGRIVC---EQEGSGPCFTCGTLVCT 76
>7301606 [R] KOG2503 Tubby superfamily protein TULP4
Length = 1478
Score = 26.6 bits (57), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 33 GCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLS 68
G N +T+ Q +T +C TV TP KA +S
Sbjct: 1225 GSSNASTLERQPQPEITGAACGTVEATPVEAKASVS 1260
>Hs7662048 [V] KOG1841 Smad anchor for receptor activation
Length = 1539
Score = 26.2 bits (56), Expect = 8.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 28 DVKCPGCLNITTVFSHAQTAVTCESCSTVLC 58
D + P C+N F+ + C +C V C
Sbjct: 747 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFC 777
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.128 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,704,622
Number of Sequences: 60738
Number of extensions: 149238
Number of successful extensions: 351
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 19
length of query: 76
length of database: 30,389,216
effective HSP length: 52
effective length of query: 24
effective length of database: 27,230,840
effective search space: 653540160
effective search space used: 653540160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)