ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2976 suspect: LH J KOG2539 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosome small subunit component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2976 1034064 1031878 -729 
         (729 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKL155c [J] KOG2539 Mitochondrial/chloroplast ribosome small sub...   593   e-169
SPAC1420.04c_1 [J] KOG2539 Mitochondrial/chloroplast ribosome sm...    82   4e-15

>YKL155c [J] KOG2539 Mitochondrial/chloroplast ribosome small subunit
           component
          Length = 628

 Score =  593 bits (1528), Expect = e-169
 Identities = 310/641 (48%), Positives = 411/641 (63%), Gaps = 72/641 (11%)

Query: 75  YRDQNGNHLQGENAEEARLLPKTLEGRVLRDQIQLPSVMSQAIQNNIMSLHIPGNLRRAA 134
           YRD+  +  Q  N++E RLL KTL+G+  RDQ++L   +S+AI NNIM++HIP NLRR A
Sbjct: 46  YRDETASTTQATNSKELRLLSKTLQGQSYRDQLELNPDVSKAINNNIMAVHIPNNLRRVA 105

Query: 135 SKYFVELYE-SSLHRPTSSNIEVDSHIASIFVQNYAAIYQSLSELKKRVG-ESFNPQRVL 192
           + Y+ E+ E +SLHRP  + +EVD+HIASIF+QNY +I+QSL EL+KRVG ++F PQR+L
Sbjct: 106 TNYYKEIQEPNSLHRPCRTKMEVDAHIASIFLQNYGSIFQSLKELQKRVGPDNFKPQRIL 165

Query: 193 DVGYGPATGIVALNDLMGKEYRPRVKEATIIGHIEMQKRAKIILSRQLNEIPDDMLYGXX 252
           DVGYGPATGIVALND++G  YRP +K+A I+G+ EMQ+RAKIILSRQLNE+ D +     
Sbjct: 166 DVGYGPATGIVALNDILGPNYRPDLKDAVILGNAEMQERAKIILSRQLNEVVDTVEENVS 225

Query: 253 XXXXXXXXXXXXADNIEGDDEMLGEVATKSIHINTRLRKDVPGSNEYDLIILTHQLLRHQ 312
                         N + +DE +GEV TK I+I T LR  +P S EYDLIILTHQLL   
Sbjct: 226 TEKEQETDRRNK--NFQ-EDEHIGEVMTKKINIMTNLRSSIPASKEYDLIILTHQLLHDG 282

Query: 313 ERFPAQIDDNLDHYLKLLSPNGHLVIVERGNPMGFEIIARARQFMIRPEKYPEEHGKIPR 372
            +FP Q+D+N++HYL +L+P GH+VI+ERGNPMGFEIIARARQ  +RPE +P+E GKIPR
Sbjct: 283 NQFPIQVDENIEHYLNILAPGGHIVIIERGNPMGFEIIARARQITLRPENFPDEFGKIPR 342

Query: 373 PWNRGNKMMGRTSYRSVPVENEEPTLESLNINDDEYKQLMENLDAKYGEINKQDLEFEPE 432
           PW+RG  + G+                                DA+ G I+         
Sbjct: 343 PWSRGVTVRGKK-------------------------------DAELGNIS--------- 362

Query: 433 LLEAIEKEDSKRGTSSDEESYFIKIVAPCSHHRKCPLQIGKPHYYDLDEGSKLNFCNFQK 492
                              +YF+K++APC H RKCPLQ+G P++Y   EG  L FCNFQK
Sbjct: 363 ------------------SNYFLKVIAPCPHQRKCPLQVGNPNFYTHKEGKDLKFCNFQK 404

Query: 493 TVLRPRFTIELKKGKVLAAPWQTPTDGIGIKGKSAPGSGRRNGKSFEIINYSYLIAQRSS 552
           ++ RP+F+IELKKGK+LA  W    DG         G+GRRNG+ +EI+NYSYLI +RS 
Sbjct: 405 SIKRPKFSIELKKGKLLATSW----DGSQGNASRLKGTGRRNGRDYEILNYSYLIFERSH 460

Query: 553 KDRATTEAINREREEN-KIKYDIGSLGDETANTWPRIVKQPTKRKGHVILDLCAPSGKFE 611
           KD  T + I + R EN   KYDIGSLGD+T N+WPRI+  P KRKGHV++DLCAPSG+ E
Sbjct: 461 KDENTLKEIKKLRNENVNGKYDIGSLGDDTQNSWPRIINDPVKRKGHVMMDLCAPSGELE 520

Query: 612 KWIVPKSLDKQIYHDARKTQKGDLWTLDAKTKLAGGGALNVNXXXXXXXXXXXXXXRAVK 671
           KW V +S  KQIYHDARK++KGDLW   AKT++ G G LNV               +  +
Sbjct: 521 KWTVSRSFSKQIYHDARKSKKGDLWASAAKTQIKGLGDLNVKKFHKLEKERIKQLKKEER 580

Query: 672 SKSRELKDMANQLDNEREHMDPE----SAVDTLAKFHEHNF 708
            K+R+  +  N+L++  +  D +      +  L+ FH ++F
Sbjct: 581 QKARKAMESYNELEDSLQFDDHQFSNFEVMKKLSTFHGNDF 621


>SPAC1420.04c_1 [J] KOG2539 Mitochondrial/chloroplast ribosome small subunit
           component
          Length = 497

 Score = 81.6 bits (200), Expect = 4e-15
 Identities = 53/201 (26%), Positives = 93/201 (45%), Gaps = 36/201 (17%)

Query: 443 KRGTSSDEESYFIKIVAPCSHHRKCPLQIGKPHYYDLDEGSKLNFCNFQKTVLRPRFTIE 502
           ++  ++ ++ +   IVAPC H  +CP+        D++ G + N C+F++      F+  
Sbjct: 247 QKSKNTSDKQFNAHIVAPCPHDGRCPI--------DIENGVRANICSFKQHFFLSPFSR- 297

Query: 503 LKKGKVLAAPWQTPTDGIGIKGKSAPGSGRRNGKSFEIINYSYLIAQRSSKDRATTEAIN 562
                 L  P                   R + +S +  +YSY++ Q+    R       
Sbjct: 298 ------LYVP-------------------RSHRRSSDRSHYSYVVIQKGIT-RPLNNTTQ 331

Query: 563 REREENKIKYDIGSLGDETANTWPRIVKQPTKRKGHVILDLCAPSGKFEKWIVPKSLDKQ 622
           R + +  +  ++ ++   T   WPRI++ P KR GHVI+D+C    +  + IVPKS  K 
Sbjct: 332 RFKNDEDLLENV-NVTSPTLKNWPRIIRPPLKRDGHVIIDVCDSDARLRRNIVPKSQGKL 390

Query: 623 IYHDARKTQKGDLWTLDAKTK 643
            Y  ARK+  GDL+ L+ K +
Sbjct: 391 AYRLARKSAWGDLFPLEGKVQ 411


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,690,216
Number of Sequences: 60738
Number of extensions: 1946020
Number of successful extensions: 4306
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4295
Number of HSP's gapped (non-prelim): 6
length of query: 729
length of database: 30,389,216
effective HSP length: 114
effective length of query: 615
effective length of database: 23,465,084
effective search space: 14431026660
effective search space used: 14431026660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)