ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3019    suspect: LH   U     KOG1091  Intracellular trafficking, secretion, and vesicular transport  Ypt/Rab-specific GTPase-activating protein GYP6

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3019 1049076  1049993 306  
         (306 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YJL044c [U] KOG1091 Ypt/Rab-specific GTPase-activating protein GYP6    79   8e-15

>YJL044c [U] KOG1091 Ypt/Rab-specific GTPase-activating protein GYP6
          Length = 458

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 71/273 (26%), Positives = 126/273 (46%), Gaps = 53/273 (19%)

Query: 4   SSNGNRFGIQKLEAHDVGNVDEHPLAIVNG--------------VSMMDSQEMIELDVAR 49
           S+  +  GI++L    V  V++HPL+  N               +++ ++ E+I+LD++R
Sbjct: 98  SNVSSSVGIRRLTP--VEAVEKHPLSDDNDKTKGSLSKGSDEKPLTLRETLEIIDLDLSR 155

Query: 50  LHSGQL-NGPQEENALRQILVNWV---KRNGVGYKQGMHEICLVLYLE-------NDKDV 98
           +    +   P+    +RQ+L N++   +   + YKQG HEI  V+YL+       ++ D+
Sbjct: 156 IMLDDIFQEPKVHAQMRQLLYNYLLIHQSEHLQYKQGFHEILSVIYLQLYHGTDLDNTDL 215

Query: 99  DECYKRFDNVMKWLYPLFYRDSGVNEWIKNDFSPMLRKMSPRRLYEIIVV--------KF 150
                 F+ +M  + P+FY +  +  W K  F+ + R   P    ++           K 
Sbjct: 216 QNVLIIFNKLMNQIEPIFYNEENLINWDKRVFTKIFRICLPDLFSKVFYQPPKTGSGKKK 275

Query: 151 QISHAV-----WCIRWCRLLFIRELSGPDQY-LPIWYELFDIENK-GKFIACVTIVMLMC 203
            + H +     W IRW RLLF+REL  P +Y L +W  +         FIAC  I +L+ 
Sbjct: 276 NVDHLIHSNLIWLIRWTRLLFLREL--PLKYVLIVWDHVLTFNYPLDIFIACTIITLLLS 333

Query: 204 IVPQLTE---------AQDESECLYLLLNYPKL 227
           I  +L E           +  E + L+L++ K+
Sbjct: 334 IYDELHELVSQGDYEHTNNNDEFVELILHFKKI 366


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,951,490
Number of Sequences: 60738
Number of extensions: 892966
Number of successful extensions: 1941
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 1
length of query: 306
length of database: 30,389,216
effective HSP length: 106
effective length of query: 200
effective length of database: 23,950,988
effective search space: 4790197600
effective search space used: 4790197600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)