ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3020.1    suspect: LH  R     KOG4197   General function prediction only                               FOG: PPR repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3020.1 1050126  1050341 72   
         (72 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27110 [R] KOG4197 FOG: PPR repeat                                  28   3.0  
Hs22041906 [O] KOG3607 Meltrins fertilins and related Zn-depende...    27   6.6  

>At5g27110 [R] KOG4197 FOG: PPR repeat
          Length = 691

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 1/47 (2%)

Query: 26  VFVQIEHQWDTGWNVQLSN-VSIGDVFQMLDQSSQRVTVGGDHDGLT 71
           VF + +      WNV +S+ +S+G+ F+ ++   Q V+VG   D +T
Sbjct: 366 VFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVT 412


>Hs22041906 [O] KOG3607 Meltrins fertilins and related Zn-dependent
           metalloproteinases of the ADAMs family
          Length = 493

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (56%)

Query: 34  WDTGWNVQLSNVSIGDVFQMLDQSSQRV 61
           WDTG+ + +S   IGDV    +  S+ V
Sbjct: 393 WDTGYRMGISTPDIGDVKDATECGSEHV 420


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.325    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,330,463
Number of Sequences: 60738
Number of extensions: 86118
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 2
length of query: 72
length of database: 30,389,216
effective HSP length: 48
effective length of query: 24
effective length of database: 27,473,792
effective search space: 659371008
effective search space used: 659371008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)