ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3065 good A KOG1135 RNA processing and modification mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3065 1065534 1063099 -812
(812 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR115w [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 614 e-175
SPBC1709.15c [A] KOG1135 mRNA cleavage and polyadenylation facto... 189 1e-47
7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 155 3e-37
Hs17477312 [A] KOG1135 mRNA cleavage and polyadenylation factor ... 120 1e-26
CE09299 [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 104 5e-22
At5g23880 [A] KOG1135 mRNA cleavage and polyadenylation factor I... 103 1e-21
YLR277c [A] KOG1137 mRNA cleavage and polyadenylation factor II ... 58 5e-08
>YLR115w [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 859
Score = 614 bits (1583), Expect = e-175
Identities = 340/864 (39%), Positives = 501/864 (57%), Gaps = 57/864 (6%)
Query: 1 MTYTIETCRDEKKRFEGTIVRFNNVIVLLDPGWN-GEGSYEECEEFWTQYISEVDIVLIS 59
MTY C D G++VRF+NV +L+DPGWN + SYE+C ++W + I E+D++++S
Sbjct: 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILS 60
Query: 60 QPTIECLGSYAMMFKQFLPHFRSRIQVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMD 119
QPTIECLG++++++ F HF SRIQVY TLPV NLGRV+++D S G++GP+ +D
Sbjct: 61 QPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD 120
Query: 120 LEDIESSFDLIETVKYSQTVDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRW 179
LEDIE SFD I +KYSQ VDL++++DGL+L A+N+G PGG+IW I T SEK++YA RW
Sbjct: 121 LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRW 180
Query: 180 NHTRDTILNSADLLDNTGNPTSSMMHPTSVITNLSIIGSAEPQRKRVEHFTDTMKRAIQM 239
NHTRD ILN+A +LD TG P S++M P+++IT L GS++P +KR + F DT+K+ +
Sbjct: 181 NHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240
Query: 240 NNSXXXXXXXXXXXXXXXXXXNNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWL 299
+ S + L+E+ + +PV ++SY+RGR+LTYAKSMLEWL
Sbjct: 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWL 300
Query: 300 SSQVIKTWESRDNRSPFDVVSRLRIITPEELGGYTGQKICLVSEVDDILSQTINKLCSKD 359
S ++KTWE+R+N SPF++ SR++II P EL Y G KIC VSEV ++++ I K+ + +
Sbjct: 301 SPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSE 360
Query: 360 KVTIILTERHPNTPAQHPLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRIMKRTILN 419
K T+ILT+ P+ L K+ + +Q +N DG + +S+ +K L+
Sbjct: 361 KTTLILTK--PSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLS 418
Query: 420 KKDAEKVREMIKTRNEVREKIIEEYTAKTNDKAQTKTILFXXXXXXX------------- 466
K++ E + +K + R K I ++ A I+
Sbjct: 419 KEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVENVNG 478
Query: 467 -------------------XXXXXXXXXARGKNGSGNVKVEIPVDITSNDSVSTNEKHLM 507
+ + E+PVDI S ++ KH M
Sbjct: 479 VPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAAS--KHKM 536
Query: 508 FPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQ---------SYSNNXXXXXXXXX 558
FPF+PAK+K DDYG VV+ FLP + S K+ S N
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 559 XXXVLDSRINKSKKRKTDHN----PRKQENNDDISYLDPLKSDIYKRAIVETKVNIRCSL 614
+ D +SK R + ++ + EN D++ YL + + KR I V ++CS+
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYL-KIDKTLSKRTISTVNVQLKCSV 655
Query: 615 VYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVDNQVVVNLTKRNIDILVTEFNNSVE 674
V ++L S+V+ RS +IIWP++K RK+++ + ++ L K+NI+++ N VE
Sbjct: 656 VILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMPLNKIVE 715
Query: 675 MDTSVKAIDISIDPSLDQLLNWQRISKSFTVAHVVGKLLTETDP------KAPHREKVIL 728
T++K +DISID +LD LL WQRIS S+TVA VVG+L+ E+ P K R K++L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 729 KPLSNPLALHSGSSLRIGDVRLPELKRRLTAENHKAEFQGEGTLVIDGKVLVRKINDAET 788
KPL H +L IGDVRL +LK+ LT +N+ AEF+GEGTLVI+ KV VRKINDAET
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDAET 835
Query: 789 IVDGSPSDVFYKVKSAVSDMLANV 812
I+DG+PS++F VK V+DMLA +
Sbjct: 836 IIDGTPSELFDTVKKLVTDMLAKI 859
>SPBC1709.15c [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 797
Score = 189 bits (480), Expect = 1e-47
Identities = 175/834 (20%), Positives = 357/834 (41%), Gaps = 95/834 (11%)
Query: 20 VRFNNVIVLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLPH 79
+ + + + +DPG + + E E + D++L+S + +G + ++
Sbjct: 18 IELDGIHIYIDPGSDDSLKHPEVPE-------QPDLILLSHSDLAHIGGLVYAYYKY--- 67
Query: 80 FRSRIQVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLE--DIESSFDLIETVKYSQ 137
+Y TLP N+GR+ +D + S N + D+ D+++ FD I ++Y Q
Sbjct: 68 DWKNAYIYATLPTINMGRMTMLDAIKS--------NYISDMSKADVDAVFDSIIPLRYQQ 119
Query: 138 TVDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRWNHTRDTILNSADLLDNTG 197
L K GL++ A+N+G+ GGT+W++I SE +LYA WNH++D LN A L N G
Sbjct: 120 PTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSN-G 178
Query: 198 NPTSSMMHPTSVIT--NLSIIGSAEPQRKRVEHFTDTMKRAIQMNNSXXXXXXXXXXXXX 255
+ ++ P ++IT N S++ S ++KR E F +++ ++ +
Sbjct: 179 HILEALNRPNTLITDANNSLV-SIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLE 237
Query: 256 XXXXXNNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQVIKTWESRDNRSP 315
+N + P+ +S + +++ YAKSM+EW+ +++ + +N
Sbjct: 238 LCCILDNHWSASQP---PLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGINENLLE 294
Query: 316 FDVVSRLRIITPEELGGYTGQKICLVSEVD---DILSQTINKLCSKDKVTIILTERHPNT 372
F ++ + + G G K+ L + + + + L S++ +IL +
Sbjct: 295 FRNINTITDFSQISHIG-PGPKVILATALTLECGFSQRILLDLMSENSNDLILFTQRSRC 353
Query: 373 PAQHPLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRIMKRTILNKKDAEKVREMIKT 432
P + W++A K + +P+ + +++I + L + E++R +
Sbjct: 354 PQNSLANQFIRYWERASK---KKRDIPHPVGLYAEQAVKIKTKEPL---EGEELRSYQEL 407
Query: 433 RNEVREKIIEEYTAKTNDKAQTKTILFXXXXXXXXXXXXXXXXARGKNGSGNVKVEIPVD 492
R K E+ + ++ L GS + D
Sbjct: 408 EFSKRNKDAEDTALEFRNRTILDEDLSSSSSSEDDDLDLNTEVPHVALGSSAFLMGKSFD 467
Query: 493 ITSNDSV--STNEKHLMFPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQSYSNNX 550
+ D + + K+ MFP+ + + D+YG+++ + F E + + S N
Sbjct: 468 LNLRDPAVQALHTKYKMFPYIEKRRRIDEYGEIIKHQDFSMINEPANTLELENDSDDN-- 525
Query: 551 XXXXXXXXXXXVLDSRINKSKKRK----TDHNPRKQENNDDISYLDPLKSDIYKRAIVET 606
+ N + KRK D +K+E D+ + +D E
Sbjct: 526 --------------ALSNSNGKRKWSEINDGLQQKKEEEDEDEVPSKIITD-------EK 564
Query: 607 KVNIRCSLVYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVD---NQVVVNLTKRNID 663
+ + C + +ID+ + + RS+ I P + PR+++++ ++ + +L+ D
Sbjct: 565 TIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKD 624
Query: 664 ILVTEFNNSVEMDTSVKAIDISIDPSLDQLLNWQRISKSFTVAHVVGKL-LTETDPKAPH 722
+ + + + + V A + + L + L W ++ + V+H++ K+ +++ +
Sbjct: 625 VYIPNYGEIINVSIDVNAFSLKLADDLIKNLIWTKVG-NCEVSHMLAKVEISKPSEEEDK 683
Query: 723 REKVILK-----------------PLSNPLALHS-------GSSLRIGDVRLPELKRRLT 758
+E+V K P+ N L L S + L +G++RL L++ L
Sbjct: 684 KEEVEKKDGDKERNEEKKEEKETLPVLNALTLRSDLARAPRAAPLLVGNIRLAYLRKALL 743
Query: 759 AENHKAEFQGEGTLVIDGKVLVRKINDAETIVDGSPSDVFYKVKSAVSDMLANV 812
+ AE +GEG L+ G V VRK++ + V+GS S+ F++++ V D LA V
Sbjct: 744 DQGISAELKGEGVLLCGGAVAVRKLSGGKISVEGSLSNRFFEIRKLVYDALAVV 797
>7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 756
Score = 155 bits (391), Expect = 3e-37
Identities = 186/827 (22%), Positives = 345/827 (41%), Gaps = 125/827 (15%)
Query: 19 IVRFNNVIVLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLP 78
I++ ++V +LLD GW+ + +E Q + +D VL+S P LG+ LP
Sbjct: 22 ILQIDDVRILLDCGWDEKFDANFIKELKRQ-VHTLDAVLLSHPDAYHLGA--------LP 72
Query: 79 HFRSRI----QVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVK 134
+ ++ +Y T+PV +G++ DL S +G F + L+D++++F+ I +K
Sbjct: 73 YLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFD--LFSLDDVDTAFEKITQLK 130
Query: 135 YSQTVDLKNKFDGLSLEAHNSGYAPGGTIWTII-TSSEKILYAPRWNHTRDTILNSADLL 193
Y+QTV LK+K G+S+ N+G+ GGTIW I+ E I+YA +NH ++ L+ +L
Sbjct: 131 YNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCEL- 189
Query: 194 DNTGNPTSSMMHPTSVITNLSIIGSAEPQRKRVEHFTDTMKRAIQMNNSXXXXXXXXXXX 253
+ P+ +IT+ + +R+ + T NN
Sbjct: 190 -------DRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGR 242
Query: 254 XXXXXXXNNFLYENMRGGL-KYDIPVF-LISYSRGRSLTYAKSMLEWLSSQVIKTWE-SR 310
+ L++N GL Y + + +SY+ + +AKS +EW+S ++ K +E +R
Sbjct: 243 VLELAHMLDQLWKNKESGLMAYSLALLNNVSYN---VIEFAKSQIEWMSDKLTKAFEGAR 299
Query: 311 DNRSPFDVVSRLRIITPEELGGYTGQKICLVSEVD---DILSQTINKLCSKDKVTIILTE 367
+N F + + + G K+ L S D + S +IILT
Sbjct: 300 NNPFQFKHIQLCHSLA-DVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTT 358
Query: 368 R-HPNTPAQHPLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRIMKRTILNKKDAEKV 426
R P T A + Q + R L+G L RT EK+
Sbjct: 359 RTSPGTLAMELVENCAPGKQIELDVRRRVDLEG--------AELEEYLRT-----QGEKL 405
Query: 427 REMIKTRNEVREKIIEEYTAKTNDKAQTKTILFXXXXXXXXXXXXXXXXARGKNGSGNVK 486
+I V+ + EE ++++ D + I G++ SG K
Sbjct: 406 NPLI-----VKPDVEEESSSESEDDIEMSVI---------TGKHDIVVRPEGRHHSGFFK 451
Query: 487 VEIPVDITSNDSVSTNEKHLMFPFHPAKLKSDDYGDVVNLKRF-LPQEESYDQAQSLKQS 545
S H+MFP+H K+K D+YG+++NL + + Y+ +Q+
Sbjct: 452 -------------SNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQN 498
Query: 546 YSNNXXXXXXXXXXXXVLDSRINKSKKRKTDHNPRKQEN----NDDISYLDPLKSDIYKR 601
N KK + +Q N ++D+ L+ I +R
Sbjct: 499 KEN---------------------VKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQR 537
Query: 602 AIVETKVNIRCSLVYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVDNQVVVNLTKRN 661
+E ++ ID + S+ I ++PR+VIV+ A QVV ++N
Sbjct: 538 KTIEVNAQVQ----RIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE-GTQVVARHCEQN 592
Query: 662 ID--ILVTEFNNSVEMDTSVKAIDISIDPSLDQLLNWQRISKSFTVAHVVGKL------- 712
+ + + +++ + + + + L L +Q+ K VA V G+L
Sbjct: 593 VGARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQK-GKDAEVAWVDGRLGMRVKAI 651
Query: 713 ------LTETDPKAPHREKVILKPLS-NPLALHSGSSLRIGDVRLPELKRRLTAENHKAE 765
E D + + L+ L+ + + +H +S+ I +++L + K+ L N +E
Sbjct: 652 EAPMDVTVEQDASVQEGKTLTLETLADDEIPIH--NSVLINELKLSDFKQTLMRNNINSE 709
Query: 766 FQGEGTLVIDGKVLVRKINDAETIVDGSPSDVFYKVKSAVSDMLANV 812
F G +G + +R+++ + ++G S+ +YK++ + + A V
Sbjct: 710 FSGGVLWCSNGTLALRRVDAGKVAMEGCLSEEYYKIRELLYEQYAIV 756
>Hs17477312 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 782
Score = 120 bits (300), Expect = 1e-26
Identities = 186/847 (21%), Positives = 328/847 (37%), Gaps = 157/847 (18%)
Query: 28 LLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLPHFRSRI--- 84
LLD GW+ S + + +++ ++D VL+S P LG+ LP+ ++
Sbjct: 31 LLDCGWDEHFSMDIIDSL-RKHVHQIDAVLLSHPDPLHLGA--------LPYAVGKLGLN 81
Query: 85 -QVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVKYSQTVDLKN 143
+Y T+PV +G++ DL S F+ + L+D++++FD I+ +K+SQ V+LK
Sbjct: 82 CAIYATIPVYKMGQMFMYDLYQSRHNTEDFT--LFTLDDVDAAFDKIQQLKFSQIVNLKG 139
Query: 144 KFDGLSLEAHNSGYAPGGTIWTII-TSSEKILYAPRWNHTRDTILNSADLLDNTGNPTSS 202
K GLS+ +G+ GGTIW I+ E+I+YA +NH R+ LN L
Sbjct: 140 KGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSL--------EM 191
Query: 203 MMHPTSVITNLSIIGSAEPQRK-RVEHFTDTMKRAIQMNNSXXXXXXXXXXXXXXXXXXN 261
+ P+ +IT+ +P+RK R E + ++ + + +
Sbjct: 192 LSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLD 251
Query: 262 NFLYENMRGGLKYDIPVF-LISYSRGRSLTYAKSMLEWLSSQVIKTWESRDNRSPFDVVS 320
G Y + + +SY+ + ++KS +EW+S ++++ +E + N +PF
Sbjct: 252 QIWRTKDAGLGVYSLALLNNVSYN---VVEFSKSQVEWMSDKLMRCFEDKRN-NPFQFRH 307
Query: 321 RLRIITPEELGGYTGQKICLVSEVD---DILSQTINKLCSKDKVTIILTER-HPNTPAQH 376
+L K+ L S+ D + C K +IILT R P T A+
Sbjct: 308 LSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARF 367
Query: 377 PLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRIMKRTILNKKDAEKVREMIKTRNEV 436
L NP + LR KR L K+ E+ E K + E
Sbjct: 368 --------------------LIDNPSEKITEIELR--KRVKLEGKELEEYLEKEKLKKEA 405
Query: 437 REKIIEEYTAKTNDKAQTKTILFXXXXXXXXXXXXXXXXARGKNGSGNVKVEIPVDITSN 496
+K+ + A + ++ G K
Sbjct: 406 AKKLEQSKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFK---------- 455
Query: 497 DSVSTNEKHLMFPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQSYSNNXXXXXXX 556
+ + MFP ++K D+YG+++ + FL E + + K
Sbjct: 456 ---QAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSK------------- 499
Query: 557 XXXXXVLDSRINKSKKRKTDHNPRKQENNDDISYLDPLKSDIYKRAIVETK-VNIRCSLV 615
L+S + N D+ +D SD+ + I T+ + I+ +
Sbjct: 500 ------LESGLT---------------NGDE--PMDQDLSDVPTKCISTTESIEIKARVT 536
Query: 616 YIDLTSIVNARSIAIIWPAIKPRKVIVL---PSAAPVDNQVVVNLTKRNIDILVTEFNNS 672
YID + SI I +KPR++I++ P A+ + ++I + + + + +
Sbjct: 537 YIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHET 596
Query: 673 VEMDTSVKAIDISIDPSL----------DQLLNW------QRISKSFT-VAHVVGKLL-- 713
V+ + + + SL D L W R+SK T V G+L
Sbjct: 597 VDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDD 656
Query: 714 ---TETDPKAPHREKVILK----------------------PLSNPLALH---SGSSLRI 745
+E +AP VI + P PL H S+ +
Sbjct: 657 GEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFM 716
Query: 746 GDVRLPELKRRLTAENHKAEFQGEGTLVIDGKVLVRKINDAETIVDGSPSDVFYKVKSAV 805
+ RL + K+ L E +AEF G G LV + +V VR+ ++G FY+++ +
Sbjct: 717 NEPRLSDFKQVLLREGIQAEFVG-GVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLL 775
Query: 806 SDMLANV 812
+ A V
Sbjct: 776 YEQYAIV 782
>CE09299 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 843
Score = 104 bits (260), Expect = 5e-22
Identities = 149/704 (21%), Positives = 283/704 (40%), Gaps = 79/704 (11%)
Query: 27 VLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLPHFRSRI-- 84
+LLD GW+ + EE +I ++ VLIS P LG LP+ S+
Sbjct: 30 ILLDCGWDERFGLQYFEEL-KPFIPKISAVLISHPDPLHLGG--------LPYLVSKCGL 80
Query: 85 --QVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVKYSQTVDLK 142
VY T+PV +G++ D++ S + F + +D D++++F+ +E VKY+QTV LK
Sbjct: 81 TAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLD--DVDTAFEKVEQVKYNQTVVLK 138
Query: 143 NKFDGLSLEAHNSGYAPGGTIWTII-TSSEKILYAPRWNHTRDTILNSADLLDNTGNPTS 201
G+ A +G+ GG+IW I + E I+Y +NH ++ LN G
Sbjct: 139 GD-SGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLN--------GCSFD 189
Query: 202 SMMHPTSVITNLSIIGSAEPQRK-RVEHFTDTMKRAIQMNNSXXXXXXXXXXXXXXXXXX 260
+ P +IT I + +RK R E + R ++
Sbjct: 190 NFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLL 249
Query: 261 NNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQVIKTWESRDNRSPFDVVS 320
+ L+ N GL + ++S+ + +AKS LEW++ ++ K S +PF +
Sbjct: 250 DQ-LWSNADAGLS-TYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKH 307
Query: 321 RLRIITPEELGGYTGQKICLVSEVD---DILSQTINKLCSKDKVTIILTERHPNTPAQHP 377
+ +EL K+ L S D + CS + +ILT R PA
Sbjct: 308 VTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR----PASFT 363
Query: 378 LRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRIMKRTILNKKD--AEKVREMIKTRNE 435
L + N + A DG +SL + KR L ++ K R+ + E
Sbjct: 364 L-------AAKLVNMAERANDGVLKHEDRLISLVVKKRVALEGEELLEYKRRKAERDAEE 416
Query: 436 VR---EKIIEEYTAKTNDKAQTKTILFXXXXXXXXXXXXXXXXARGKNGSGNVKVEIPVD 492
R E+ + A +D + I + + ++ +
Sbjct: 417 TRLRMERARRQAQANESDDSDDDDIAAPIVPRHSEKDFRSFDGSENDAHTFDIMAKWDNQ 476
Query: 493 ITSNDSVSTNEKHLMFPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQSYSNNXXX 552
++ +T + MFP+ K+K DDYG+V+ P++ + L++ + +
Sbjct: 477 QKASFFKTTKKSFPMFPYIEEKVKWDDYGEVIK-----PEDYTVISKIDLRKGQNKDEPV 531
Query: 553 XXXXXXXXXVLDSRINKSKKRKTDHNPRKQENNDDISYLDPLKSDIYKRAIVETKVNIRC 612
+ K ++ + +NP ND + + P K +K +V + C
Sbjct: 532 V-------------VKKREEEEEVYNP-----NDHVEEM-PTKCVEFK-----NRVEVSC 567
Query: 613 SLVYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVDNQVVVNLTKRNIDILVTEFNNS 672
+ +I+ I + S + + PR++IV+ + +V D + + +
Sbjct: 568 RIEFIEYEGISDGESTKKLLAGLLPRQIIVVHGSRDDTRDLVAYFADSGFDTTMLKAPEA 627
Query: 673 -VEMDTSVKAI--DISIDPSLDQLLNWQRISKSFTVAHVVGKLL 713
+D SV++ +++ +L + ++ +S+ ++A + +++
Sbjct: 628 GALVDASVESFIYQVALSDALLADIQFKEVSEGNSLAWIDARVM 671
>At5g23880 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 739
Score = 103 bits (257), Expect = 1e-21
Identities = 77/297 (25%), Positives = 134/297 (44%), Gaps = 23/297 (7%)
Query: 19 IVRFNNVIVLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLP 78
+V + L+D GWN E ++ S +D VL+S P +G+ KQ
Sbjct: 22 LVSIDGFNFLIDCGWNDLFDTSLLEPL-SRVASTIDAVLLSHPDTLHIGALPYAMKQL-- 78
Query: 79 HFRSRIQVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVKYSQT 138
VY T PV LG + D S + F + L+DI+S+F + + YSQ
Sbjct: 79 --GLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFD--LFTLDDIDSAFQNVIRLTYSQN 134
Query: 139 VDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRWNHTRDTILNSADLLDNTGN 198
L K +G+ + H +G+ GG+IW I E ++YA +NH ++ LN G
Sbjct: 135 YHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLN--------GT 186
Query: 199 PTSSMMHPTSVITNL--SIIGSAEPQRKRVEHFTDTMKRAIQMNNSXXXXXXXXXXXXXX 256
S + P +IT+ ++ + +++R + F DT+ + +++ +
Sbjct: 187 VLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLEL 246
Query: 257 XXXXNNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQVIKTWE-SRDN 312
+ + RG + P++ ++Y ++ Y KS LEW+S + K++E SRDN
Sbjct: 247 LLILEQ--HWSQRG---FSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDN 298
>YLR277c [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 779
Score = 58.2 bits (139), Expect = 5e-08
Identities = 83/367 (22%), Positives = 159/367 (42%), Gaps = 46/367 (12%)
Query: 19 IVRFNNVIVLLD----PGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFK 74
I+++ V+LD P + G S +EF +S+VDI+LIS ++ S + +
Sbjct: 26 ILQYKGKTVMLDAGIHPAYQGLASLPFYDEF---DLSKVDILLISHFHLDHAASLPYVMQ 82
Query: 75 QFLPHFRSRIQVYGTLPVSNLGRVNSVDLL--TSVGI----LGPFSNAVMDLEDIESSFD 128
+ +F+ R V+ T P + R D + TS+G +G + ED+ SFD
Sbjct: 83 R--TNFQGR--VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFD 138
Query: 129 LIETVKYSQTVDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRWNHTRDTILN 188
IETV Y TVD+ +G+ A ++G+ G ++ I + ++L+ ++ D LN
Sbjct: 139 KIETVDYHSTVDV----NGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLN 194
Query: 189 SADLLDNTGNPTSSMMHPTSVITNLSIIGSA--EPQRKRVEHFTDTMKRAIQMNNSXXXX 246
SA++ P SS +V+ S G+A EP+ R T + +
Sbjct: 195 SAEV-----PPLSS-----NVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLP 244
Query: 247 XXXXXXXXXXXXXXNNFLYEN---MRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQV 303
+ + ++ + GG +P+F S + ++ ++ + ++ +
Sbjct: 245 VFALGRAQEIMLILDEYWSQHADELGGG---QVPIFYASNLAKKCMSVFQTYVNMMNDDI 301
Query: 304 IKTW-ESRDNRSPFDVVSRLRIITPEELGGYTGQKICLVSE---VDDILSQTINKLCSKD 359
K + +S+ N F +S LR + E+ + G + L S + + + C +D
Sbjct: 302 RKKFRDSQTNPFIFKNISYLRNL--EDFQDF-GPSVMLASPGMLQSGLSRDLLERWCPED 358
Query: 360 KVTIILT 366
K +++T
Sbjct: 359 KNLVLIT 365
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,411,698
Number of Sequences: 60738
Number of extensions: 1877480
Number of successful extensions: 5247
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5210
Number of HSP's gapped (non-prelim): 17
length of query: 812
length of database: 30,389,216
effective HSP length: 115
effective length of query: 697
effective length of database: 23,404,346
effective search space: 16312829162
effective search space used: 16312829162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)