ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3106 good G KOG0449 Carbohydrate transport and metabolism Succinate dehydrogenase, cytochrome b subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3106 1079451 1079993 181
(181 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL141w [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 184 4e-47
YMR118c [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 176 2e-44
SPCC330.12c [G] KOG0449 Succinate dehydrogenase cytochrome b sub... 138 4e-33
7299412 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 86 3e-17
CE00598 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 81 9e-16
Hs4506863 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 71 7e-13
7299395 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit 64 9e-11
>YKL141w [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 198
Score = 184 bits (468), Expect = 4e-47
Identities = 89/161 (55%), Positives = 116/161 (71%), Gaps = 1/161 (0%)
Query: 20 TSNTRGLMASFIRRQSNVVTKKTTAQEEYELLVSQRKVRPVSPHLTIYQPQLTWYLSSVH 79
T+ T L S ++ ++ + K EE ++L QR RP+SPHLTIYQPQLTWYLSS+H
Sbjct: 38 TARTNFLSTSPLKNVASEMNTKAAIAEE-QILNKQRAKRPISPHLTIYQPQLTWYLSSLH 96
Query: 80 RVSGVFLGLAFYAVTIAFGVSTVFGLGMSTENLVQFYNEKIPSWIDLTAKAGFAYLFAFH 139
R+S V +GL FY TI FGVS + GLG++TE + +Y++K + + K FAYLFA H
Sbjct: 97 RISLVLMGLGFYLFTILFGVSGLLGLGLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAIH 156
Query: 140 FGNGIRHLIWDTGKELTLKGVYRTGYAVLGLTAIMGSYLLT 180
+G IRHLIWDT KELTLKGVYRTGYA++G TA++G+YLLT
Sbjct: 157 YGGAIRHLIWDTAKELTLKGVYRTGYALIGFTAVLGTYLLT 197
>YMR118c [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 196
Score = 176 bits (446), Expect = 2e-44
Identities = 80/137 (58%), Positives = 106/137 (76%)
Query: 43 TAQEEYELLVSQRKVRPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLAFYAVTIAFGVSTV 102
++ +E ELLVSQRK RP+SPHLT+Y+P+++WYLSS+HR+SGV L L FYA TI GV+T+
Sbjct: 58 SSNKEEELLVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTI 117
Query: 103 FGLGMSTENLVQFYNEKIPSWIDLTAKAGFAYLFAFHFGNGIRHLIWDTGKELTLKGVYR 162
G+ + ++L ++Y+EK+P W AK AYLFAFHFGNGIRHLIWD G ELT +GV +
Sbjct: 118 MGMDTTFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIK 177
Query: 163 TGYAVLGLTAIMGSYLL 179
TG VL T ++G+YLL
Sbjct: 178 TGSIVLAGTLVLGTYLL 194
>SPCC330.12c [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 180
Score = 138 bits (348), Expect = 4e-33
Identities = 72/161 (44%), Positives = 99/161 (60%), Gaps = 3/161 (1%)
Query: 17 QVMTSNTRGLMASFIRRQSNVVTKKTTAQEEYELLVSQRKVRPVSPHLTIYQPQLTWYLS 76
Q++ R + + RR ++ T+ T E L SQR RP SPHLTIY+PQLTWYLS
Sbjct: 19 QLLRPAGRSTLRNVWRR--SIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLS 76
Query: 77 SVHRVSGVFLGLAFYAVTIAFGVSTVFGLGMSTENLVQFYNEKIPSWIDLTAKAGFAYLF 136
S+HR++G + YA + + V+ + G + T + +++P+WI + AK +Y
Sbjct: 77 SLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTATISGLI-QQVPTWIKVPAKFVISYPL 135
Query: 137 AFHFGNGIRHLIWDTGKELTLKGVYRTGYAVLGLTAIMGSY 177
FH NGIRHLIWDT KEL+LKGVYRTGYAVL L+ + Y
Sbjct: 136 TFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLALSVLTSGY 176
>7299412 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 152
Score = 85.9 bits (211), Expect = 3e-17
Identities = 54/143 (37%), Positives = 79/143 (54%), Gaps = 6/143 (4%)
Query: 37 VVTKKTTAQEEYELLVSQRKVRPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLAFYAVTIA 96
VV+ T ++E ++R R +SPHLTIYQPQLT LS HR +G+ LG+ + + +
Sbjct: 12 VVSVAETQKDESFFEKNERLGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLG 71
Query: 97 FGVSTVFGLGMSTENLVQFYNEKIPSWIDLTA-KAGFAYLFAFHFGNGIRHLIWDTGKEL 155
+S+ + V S LTA K AY +H NGIRHL+WDTG+ L
Sbjct: 72 ALISS-----HDISHYVTMVEGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFL 126
Query: 156 TLKGVYRTGYAVLGLTAIMGSYL 178
+K VY TGYA++ + ++ + L
Sbjct: 127 KIKEVYSTGYAMVATSFVLSAIL 149
>CE00598 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 182
Score = 80.9 bits (198), Expect = 9e-16
Identities = 57/147 (38%), Positives = 78/147 (52%), Gaps = 12/147 (8%)
Query: 35 SNVVTK---KTTAQE-EYELLVSQR-KVRPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLA 89
+++VTK KT Q+ +E L+ QR K RP++PHLT+YQPQLTW LS HR+SG +
Sbjct: 24 TSIVTKSEAKTPIQKFGWEYLLKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGT 83
Query: 90 FYAVTIAFGVSTVFGLGMSTENLVQFYNE-KIPSWIDLTAKAGFAYLFAFHFGNGIRHLI 148
I F V L V F +P + K A+ FH NGIR L
Sbjct: 84 LLVGGIGFAV-----LPFDFTAFVDFIRSWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLG 138
Query: 149 WDTGKELTLKG-VYRTGYAVLGLTAIM 174
+D K + G +Y++GY V GL+AI+
Sbjct: 139 FDLAKGVNNVGQIYKSGYLVSGLSAIL 165
>Hs4506863 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 169
Score = 71.2 bits (173), Expect = 7e-13
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 36 NVVTKKTTAQEEYELLVSQR--KVRPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLAFYAV 93
N V TTA+EE E ++ RP+SPH+TIY L +S HR +G+ L A
Sbjct: 26 NAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALS----AG 81
Query: 94 TIAFGVSTVFGLGMSTENLVQFYNEKIPSWIDLTAKAGFAYLFAFHFGNGIRHLIWDTGK 153
FG+S + G L + + + TAK + +H NGIRHL+WD GK
Sbjct: 82 VSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGK 141
Query: 154 ELTLKGVYRTGYAVLGLTAI 173
L + +Y++G VL LT +
Sbjct: 142 GLKIPQLYQSGVVVLVLTVL 161
>7299395 [G] KOG0449 Succinate dehydrogenase cytochrome b subunit
Length = 261
Score = 64.3 bits (155), Expect = 9e-11
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 58 RPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLAFYAVTIAFGVSTVFGLGMSTENLVQFYN 117
R +SPHL+IY+ QLT LS+ R+SG L + + V I+ G+ + ++ +
Sbjct: 84 RQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVWFVGIS---------GLCLQGDMEGFI 134
Query: 118 EKIPSW----IDLTAKAGFAYLFAFHFGNGIRHLIWDTGKELTLKGVYRTGYAVLGLTAI 173
+K+ + AK FA+H G RHLIW K LT+ +Y TGY + LT
Sbjct: 135 KKVEKCDCHGMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIA 194
Query: 174 MGSYLL 179
+ ++LL
Sbjct: 195 LSAFLL 200
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,930,176
Number of Sequences: 60738
Number of extensions: 380206
Number of successful extensions: 1303
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 30,389,216
effective HSP length: 100
effective length of query: 81
effective length of database: 24,315,416
effective search space: 1969548696
effective search space used: 1969548696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)