ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3166 good J KOG1696 Translation, ribosomal structure and biogenesis 60s ribosomal protein L19
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3166 Similar to YBR084ca RPL19B 60S large subunit
ribosomal protein L19.e {P2.455.f2.1} [INTRON]
(195 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR084c-a [J] KOG1696 60s ribosomal protein L19 243 9e-65
YBL027w [J] KOG1696 60s ribosomal protein L19 243 9e-65
SPCC1682.14 [J] KOG1696 60s ribosomal protein L19 198 4e-51
SPBC56F2.02 [J] KOG1696 60s ribosomal protein L19 197 8e-51
At3g16780 [J] KOG1696 60s ribosomal protein L19 181 7e-46
At4g02230 [J] KOG1696 60s ribosomal protein L19 176 1e-44
At1g02780 [J] KOG1696 60s ribosomal protein L19 174 9e-44
7291886 [J] KOG1696 60s ribosomal protein L19 171 8e-43
Hs4506609 [J] KOG1696 60s ribosomal protein L19 170 1e-42
CE08034 [J] KOG1696 60s ribosomal protein L19 167 6e-42
Hs22047432 [J] KOG1696 60s ribosomal protein L19 135 4e-32
Hs17434759 [J] KOG1696 60s ribosomal protein L19 118 6e-27
Hs17460279 [J] KOG1696 60s ribosomal protein L19 108 6e-24
ECU06g1080i [J] KOG1696 60s ribosomal protein L19 107 8e-24
Hs22051896 [J] KOG1696 60s ribosomal protein L19 95 5e-20
Hs20534858 [J] KOG1696 60s ribosomal protein L19 94 1e-19
Hs20541095 [J] KOG1696 60s ribosomal protein L19 82 4e-16
Hs22042270 [J] KOG1696 60s ribosomal protein L19 81 1e-15
Hs17450729 [J] KOG1696 60s ribosomal protein L19 73 3e-13
Hs22044891 [J] KOG1696 60s ribosomal protein L19 71 8e-13
Hs17452139 [J] KOG1696 60s ribosomal protein L19 46 3e-05
Hs22056965 [J] KOG1696 60s ribosomal protein L19 44 2e-04
7303932_1 [S] KOG2889 Predicted PRP38-like splicing factor 31 1.2
YOR187w [J] KOG0460 Mitochondrial translation elongation factor Tu 30 2.7
Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 29 4.6
At5g61880 [S] KOG3442 Uncharacterized conserved protein 29 4.6
7290719 [S] KOG2985 Uncharacterized conserved protein 29 4.6
At2g29210 [AR] KOG2146 Splicing coactivator SRm160/300 subunit S... 28 6.0
7297018 [G] KOG3765 Predicted glycosyltransferase 28 6.0
At1g59910_2 [TZ] KOG1922 Rho GTPase effector BNI1 and related fo... 28 6.0
HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 28 7.9
Hs7662492 [AK] KOG0132 RNA polymerase II C-terminal domain-bindi... 28 7.9
Hs5902130 [A] KOG2548 SWAP mRNA splicing regulator 28 7.9
>YBR084c-a [J] KOG1696 60s ribosomal protein L19
Length = 189
Score = 243 bits (621), Expect = 9e-65
Identities = 125/188 (66%), Positives = 136/188 (71%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
ANLRTQKRLAASV GVGKRK+W+DP+ET+EIAQANSRNAIRKLVKNGTIVKK +HS+S
Sbjct: 2 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKS 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
RTRA A+SKR GRH+GYGKRKGT+EARLPSQVVWI AKYRDAGKID+HLYH
Sbjct: 62 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
LYK +KGN FKHKRALVEHIIQAKADAQ
Sbjct: 122 VLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKR 181
Query: 188 XXLLKEDA 195
LLKEDA
Sbjct: 182 DALLKEDA 189
>YBL027w [J] KOG1696 60s ribosomal protein L19
Length = 189
Score = 243 bits (621), Expect = 9e-65
Identities = 125/188 (66%), Positives = 136/188 (71%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
ANLRTQKRLAASV GVGKRK+W+DP+ET+EIAQANSRNAIRKLVKNGTIVKK +HS+S
Sbjct: 2 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKS 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
RTRA A+SKR GRH+GYGKRKGT+EARLPSQVVWI AKYRDAGKID+HLYH
Sbjct: 62 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
LYK +KGN FKHKRALVEHIIQAKADAQ
Sbjct: 122 VLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKR 181
Query: 188 XXLLKEDA 195
LLKEDA
Sbjct: 182 DALLKEDA 189
>SPCC1682.14 [J] KOG1696 60s ribosomal protein L19
Length = 193
Score = 198 bits (503), Expect = 4e-51
Identities = 96/148 (64%), Positives = 115/148 (76%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
ANLRTQKRLAASV GKRK+WMDP+E +EI+ ANSR IRKLVK+G +++KP +HSR
Sbjct: 2 ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRF 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
R R +KR GRHTGYGKRKGT EAR+PS VVW+ KYR++GKID+HLYH
Sbjct: 62 RIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADA 155
+LY AKGNTFKHKRAL+EHI +AKA+A
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEA 149
>SPBC56F2.02 [J] KOG1696 60s ribosomal protein L19
Length = 193
Score = 197 bits (501), Expect = 8e-51
Identities = 94/148 (63%), Positives = 115/148 (77%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
ANLRTQKRLAASV GKRK+WMDP+E +EI+ ANSR +RKL+K+G +++KP +HSR
Sbjct: 2 ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRF 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
R R +KR GRHTGYGKRKGT EAR+PS VVW+ KYR++GKID+HLYH
Sbjct: 62 RIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADA 155
+LY AKGNTFKHKRAL+EHI +AKA+A
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEA 149
>At3g16780 [J] KOG1696 60s ribosomal protein L19
Length = 209
Score = 181 bits (458), Expect = 7e-46
Identities = 83/146 (56%), Positives = 113/146 (76%)
Query: 9 NLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSR 68
+L+ QKRLAASV GK K+W+DP+E+ +I+ ANSR IRKLVK+G I++KPT+IHSRSR
Sbjct: 3 SLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 69 TRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHS 128
RA+ E+KR GRH+GYGKRKGT+EARLP++++W+ +KYR++ KIDRH+YH
Sbjct: 63 ARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHD 122
Query: 129 LYKSAKGNTFKHKRALVEHIIQAKAD 154
+Y KGN FK+KR L+E I + KA+
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKMKAE 148
>At4g02230 [J] KOG1696 60s ribosomal protein L19
Length = 208
Score = 176 bits (447), Expect = 1e-44
Identities = 82/146 (56%), Positives = 111/146 (75%)
Query: 9 NLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSR 68
+L+ QKRLA+SV GKRK+W+DP+E ++I+ ANSR IRKLVK+G I++KPT+IHSRSR
Sbjct: 3 SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 69 TRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHS 128
R + +KR GRH+GYGKRKGT+EARLP++V+W+ KYR+ KIDRH+YH
Sbjct: 63 ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122
Query: 129 LYKSAKGNTFKHKRALVEHIIQAKAD 154
+Y KGN FK+KR L+E I ++KA+
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKSKAE 148
>At1g02780 [J] KOG1696 60s ribosomal protein L19
Length = 214
Score = 174 bits (440), Expect = 9e-44
Identities = 81/146 (55%), Positives = 110/146 (74%)
Query: 9 NLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSR 68
+L+ QKRLAASV GK K+W+DP+E+++I+ ANSR IRKLVK+G I++KPT+IHSRSR
Sbjct: 3 SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 69 TRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHS 128
R M +K GRH+GYGKRKGT+EARLP++V+W+ KYR+ KID+H+YH
Sbjct: 63 ARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHD 122
Query: 129 LYKSAKGNTFKHKRALVEHIIQAKAD 154
+Y KGN FK+KR L+E I ++KA+
Sbjct: 123 MYMRVKGNVFKNKRVLMESIHKSKAE 148
>7291886 [J] KOG1696 60s ribosomal protein L19
Length = 203
Score = 171 bits (432), Expect = 8e-43
Identities = 80/149 (53%), Positives = 106/149 (70%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
++L+ QKRLAASV GK+K+W+DP+E EIA NSR IRKL+K+G I+KKP +HSR
Sbjct: 2 SSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRY 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
R R E++R GRH G+GKRKGT AR+P++++W+ KYRD+ KIDRHLYH
Sbjct: 62 RVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADAQ 156
LY KGN FK+KR L+E+I + KA+ Q
Sbjct: 122 DLYMKCKGNVFKNKRVLMEYIHKKKAEKQ 150
>Hs4506609 [J] KOG1696 60s ribosomal protein L19
Length = 196
Score = 170 bits (430), Expect = 1e-42
Identities = 80/145 (55%), Positives = 103/145 (70%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRT 69
LR QKRLA+SV GK+K+W+DP+ET EIA ANSR IRKL+K+G I++KP +HSR+R
Sbjct: 4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63
Query: 70 RAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSL 129
R ++R GRH G GKRKGT AR+P +V W+ +YR++ KIDRH+YHSL
Sbjct: 64 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123
Query: 130 YKSAKGNTFKHKRALVEHIIQAKAD 154
Y KGN FK+KR L+EHI + KAD
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKAD 148
>CE08034 [J] KOG1696 60s ribosomal protein L19
Length = 198
Score = 167 bits (424), Expect = 6e-42
Identities = 75/147 (51%), Positives = 105/147 (71%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
+NLR QKRLA++V GK ++W+DP+E +EI+ ANSR +IR+LV +G I++KP +HSR
Sbjct: 2 SNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRF 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
R R E++R GRHTGYGKR+GT AR+P + +WI +YRDA K+D+HLYH
Sbjct: 62 RAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYH 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKAD 154
LY AKGN FK+K+ L+E+I + K +
Sbjct: 122 ELYLRAKGNNFKNKKNLIEYIFKKKTE 148
>Hs22047432 [J] KOG1696 60s ribosomal protein L19
Length = 521
Score = 135 bits (340), Expect = 4e-32
Identities = 70/145 (48%), Positives = 92/145 (63%), Gaps = 13/145 (8%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRT 69
L QKR AASV GK+K+W+DP+E EIA ANSR IRKL+K+G I+ KP +HS+++
Sbjct: 4 LGLQKRPAASVLRYGKKKVWLDPNEANEIASANSRQQIRKLIKDGLIICKPVTVHSQAQC 63
Query: 70 RAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSL 129
R + R GRH G GKRKGT A +P +V +YRD+ KI+ H+YHSL
Sbjct: 64 RKNTLAHRKGRHMGTGKRKGTANAPMPEKV-------------TRYRDSKKINHHMYHSL 110
Query: 130 YKSAKGNTFKHKRALVEHIIQAKAD 154
Y K + FK K+ L+EHI + KAD
Sbjct: 111 YLKVKESVFKDKQILMEHIHKLKAD 135
>Hs17434759 [J] KOG1696 60s ribosomal protein L19
Length = 138
Score = 118 bits (295), Expect = 6e-27
Identities = 59/138 (42%), Positives = 85/138 (60%), Gaps = 8/138 (5%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRT 69
LR QKRLA+S+ GK+K+W+DP ET+EIA NSR IRKL+++G I+ KP +HS+++
Sbjct: 4 LRLQKRLASSILCCGKKKVWLDPGETSEIANVNSRQQIRKLIRDGLIILKPVPVHSQAQC 63
Query: 70 RAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSL 129
+ R K+KGT AR+P ++ W+ +Y ++ KID ++YHSL
Sbjct: 64 WKNTLAGR--------KQKGTANARMPEKITWMRRMRILRLLLRRYCESKKIDCYMYHSL 115
Query: 130 YKSAKGNTFKHKRALVEH 147
Y KGN FK+K L EH
Sbjct: 116 YLKVKGNVFKNKWILREH 133
>Hs17460279 [J] KOG1696 60s ribosomal protein L19
Length = 170
Score = 108 bits (269), Expect = 6e-24
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRT 69
LR QKRLA+SV GK+K+W+DP++T EIA ANS I KL+K+G I++KP
Sbjct: 4 LRLQKRLASSVLRCGKKKVWLDPNKTNEIANANSHQQIWKLIKDGLIIRKPV-------- 55
Query: 70 RAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSL 129
GT AR+P +V W+ +Y ++ KIDRH+YHSL
Sbjct: 56 ------------------TGTANARMPEKVTWMKRMRILHLLLRRYCESKKIDRHMYHSL 97
Query: 130 YKSAKGNTFKHKRALVEHIIQAKAD 154
Y +GN F +K L+EH + KAD
Sbjct: 98 YLKVQGNVFTNKPILMEHSHKLKAD 122
>ECU06g1080i [J] KOG1696 60s ribosomal protein L19
Length = 171
Score = 107 bits (268), Expect = 8e-24
Identities = 53/149 (35%), Positives = 85/149 (56%)
Query: 8 ANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
+N +RLA+ + GK+K+W+D +E + A++R I++L+K+ I+ K + SR
Sbjct: 2 SNEERVRRLASDILNCGKKKLWLDNNEIERLNGASTREQIKQLIKDNVIIMKQDKHTSRG 61
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
R R E+K+ GRH G GKR GT AR+P + +W+ + R G+I + +
Sbjct: 62 RCRKRLEAKKKGRHMGTGKRFGTANARMPQKKIWMKKIRAMRAMLKEMRANGEITKEDFR 121
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKADAQ 156
YK AKG+ FKH+ + + II+ KAD Q
Sbjct: 122 VFYKQAKGHLFKHRFHMKDCIIKRKADEQ 150
>Hs22051896 [J] KOG1696 60s ribosomal protein L19
Length = 145
Score = 95.1 bits (235), Expect = 5e-20
Identities = 58/145 (40%), Positives = 72/145 (49%), Gaps = 44/145 (30%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRT 69
L QKRLA+SV GK+K+W+DP ET+EIA ANS IRKL+K+G I+ KP +I
Sbjct: 4 LSLQKRLASSVLRCGKKKVWLDPKETSEIANANSHQWIRKLIKDGLIIHKP-KIDHHMYH 62
Query: 70 RAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSL 129
R ESK+ +DRH+YHSL
Sbjct: 63 RRYHESKK-------------------------------------------VDRHMYHSL 79
Query: 130 YKSAKGNTFKHKRALVEHIIQAKAD 154
Y KGN FK+KR L+EHI KAD
Sbjct: 80 YLKVKGNVFKNKRILMEHIHNLKAD 104
>Hs20534858 [J] KOG1696 60s ribosomal protein L19
Length = 376
Score = 94.0 bits (232), Expect = 1e-19
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 47 IRKLVKNGTIVKKPTRIHSRSRTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXX 106
I+KL+K+G I+ KP +HS+++ + R GRH G GK+K T A++P +V W+
Sbjct: 253 IQKLIKDGLIIHKPVIVHSQAQCWKNTLACRKGRHMGIGKQKRTANAQIPEKVTWM--RK 310
Query: 107 XXXXXXAKYRDAGKIDRHLYHSLYKSAKGNTFKHKRALVEHIIQAKAD 154
+YR++ KID H+YHSLY KGN FK+K ++EHI + KAD
Sbjct: 311 ILHRLLRRYRESKKIDGHMYHSLYLKVKGNVFKNKWIVMEHINKLKAD 358
>Hs20541095 [J] KOG1696 60s ribosomal protein L19
Length = 240
Score = 82.4 bits (202), Expect = 4e-16
Identities = 52/149 (34%), Positives = 74/149 (48%), Gaps = 31/149 (20%)
Query: 5 TCRANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIH 64
T + LR QKRLA+SV GK+KI RKL+K+G I+ KP +H
Sbjct: 74 TAMSMLRLQKRLASSVLHWGKKKI-------------------RKLIKDGLIIWKPVTVH 114
Query: 65 SRSRTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRH 124
S+++ + + G+H G QV WI +Y ++ KID H
Sbjct: 115 SQAQFWKNTLAHQKGKHMCIG------------QVTWIRRTRILCRLLRRYHESKKIDCH 162
Query: 125 LYHSLYKSAKGNTFKHKRALVEHIIQAKA 153
+YHSLY KGN FK+K+ L+E+I + KA
Sbjct: 163 MYHSLYLQMKGNVFKNKQILMEYIRKLKA 191
>Hs22042270 [J] KOG1696 60s ribosomal protein L19
Length = 383
Score = 80.9 bits (198), Expect = 1e-15
Identities = 37/81 (45%), Positives = 56/81 (68%)
Query: 3 IITCRANLRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTR 62
++T + LR QKRLA+ V GK+K+W+DP+ET EI+ ANS I KL+K+G +++KP
Sbjct: 241 MVTAMSMLRLQKRLASRVLPCGKKKVWLDPNETNEISNANSCQQIWKLIKDGLMIRKPMT 300
Query: 63 IHSRSRTRAMAESKRNGRHTG 83
+HS++R + + R GRH G
Sbjct: 301 VHSQARCQENTLAYRKGRHMG 321
>Hs17450729 [J] KOG1696 60s ribosomal protein L19
Length = 147
Score = 72.8 bits (177), Expect = 3e-13
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 53/147 (36%)
Query: 10 LRTQKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVK--KPTRIHSRS 67
L QKRL +SV G++KI RKL+K+G I++ KP +HSR+
Sbjct: 4 LTPQKRLISSVLHCGEKKI-------------------RKLIKDGLILRHRKPVTVHSRA 44
Query: 68 RTRAMAESKRNGRHTGYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYH 127
+ ++R GRH G ++ KIDRH+YH
Sbjct: 45 QCWKSTLARRKGRHLGI--------------------------------ESKKIDRHMYH 72
Query: 128 SLYKSAKGNTFKHKRALVEHIIQAKAD 154
SLY KGN FKHKR L EH + KAD
Sbjct: 73 SLYLKLKGNVFKHKRILTEHSHKLKAD 99
>Hs22044891 [J] KOG1696 60s ribosomal protein L19
Length = 120
Score = 71.2 bits (173), Expect = 8e-13
Identities = 33/72 (45%), Positives = 43/72 (58%)
Query: 83 GYGKRKGTKEARLPSQVVWIXXXXXXXXXXAKYRDAGKIDRHLYHSLYKSAKGNTFKHKR 142
G KRKGT A++P V W+ +Y ++ KID H YHSLY KGN FK+K
Sbjct: 2 GISKRKGTANAQMPGNVTWMRRMRILCWLLRRYCESKKIDHHTYHSLYLKVKGNVFKNKW 61
Query: 143 ALVEHIIQAKAD 154
L+EHI++ KAD
Sbjct: 62 ILMEHILKLKAD 73
>Hs17452139 [J] KOG1696 60s ribosomal protein L19
Length = 118
Score = 46.2 bits (108), Expect = 3e-05
Identities = 19/41 (46%), Positives = 28/41 (67%)
Query: 114 KYRDAGKIDRHLYHSLYKSAKGNTFKHKRALVEHIIQAKAD 154
+Y ++ K D H+YHSLY +GN F +K+ L+EH + KAD
Sbjct: 10 RYHESKKTDHHMYHSLYLKVQGNMFTNKQILMEHNHKLKAD 50
>Hs22056965 [J] KOG1696 60s ribosomal protein L19
Length = 108
Score = 43.5 bits (101), Expect = 2e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 114 KYRDAGKIDRHLYHSLYKSAKGNTFKHKRALVEHIIQAKAD 154
+Y ++ K D H+Y SLY KGN FK+K+ EHI + K D
Sbjct: 20 RYLESKKTDCHVYPSLYLKVKGNVFKNKQIFTEHIHKLKTD 60
>7303932_1 [S] KOG2889 Predicted PRP38-like splicing factor
Length = 355
Score = 30.8 bits (68), Expect = 1.2
Identities = 11/29 (37%), Positives = 21/29 (71%)
Query: 52 KNGTIVKKPTRIHSRSRTRAMAESKRNGR 80
+N T V++P R+ S+SR+R+ +R+G+
Sbjct: 207 ENSTAVRRPRRVRSKSRSRSRERERRSGQ 235
>YOR187w [J] KOG0460 Mitochondrial translation elongation factor Tu
Length = 437
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/74 (22%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 16 LAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRTRA---M 72
L +V G+ + +D + + A R R +K G ++ KP + + ++ A +
Sbjct: 291 LKTTVTGIEMFRKELDSAMAGDNAGVLLRGIRRDQLKRGMVLAKPGTVKAHTKILASLYI 350
Query: 73 AESKRNGRHTGYGK 86
+ GRH+G+G+
Sbjct: 351 LSKEEGGRHSGFGE 364
>Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 28.9 bits (63), Expect = 4.6
Identities = 26/84 (30%), Positives = 39/84 (45%), Gaps = 9/84 (10%)
Query: 23 VGKRKIWMDPSETAEIAQANSRNAIRKL-------VKNGTIVKKPTR-IHSRSRTRAMAE 74
VGK K PS +++ SR+ R++ V G +K R SRSR++ +
Sbjct: 283 VGKPKS-RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSR 341
Query: 75 SKRNGRHTGYGKRKGTKEARLPSQ 98
S+ R KRKG K +R S+
Sbjct: 342 SRSRSRSKSKDKRKGRKRSREESR 365
>At5g61880 [S] KOG3442 Uncharacterized conserved protein
Length = 525
Score = 28.9 bits (63), Expect = 4.6
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 3/69 (4%)
Query: 26 RKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRSRTRAMAESKRNGRHTGYG 85
R+ D E +A+ NA+ KL K V++ T + ++ A K+ H+ G
Sbjct: 274 RRELQDARERIRLAEETKINALSKLKKAEDQVQRMT---TSAKFLLPASQKKQAEHSITG 330
Query: 86 KRKGTKEAR 94
KR GT+ +R
Sbjct: 331 KRIGTEGSR 339
>7290719 [S] KOG2985 Uncharacterized conserved protein
Length = 321
Score = 28.9 bits (63), Expect = 4.6
Identities = 24/84 (28%), Positives = 37/84 (43%), Gaps = 7/84 (8%)
Query: 18 ASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKN-----GTIVKKPTRIHSRSRTRAM 72
A + GKR D S A+ R R+ VK G+ K R HS+S +
Sbjct: 82 AVLPAAGKRDRSKDKSRDRLKAKKREREREREKVKEKEKEKGSRSKDKKRSHSKSSHKLA 141
Query: 73 AESK--RNGRHTGYGKRKGTKEAR 94
+SK ++ RH +GK++ K +
Sbjct: 142 EKSKDKKSVRHKKHGKKRSRKHKK 165
>At2g29210 [AR] KOG2146 Splicing coactivator SRm160/300 subunit SRm160
(contains PWI domain)
Length = 891
Score = 28.5 bits (62), Expect = 6.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 41 ANSRNAIRKLVKNGTIVKKPTRIHSRSRTRAMAESKRNGRHTGYGKRKGTKEAR 94
+NSR R ++ + RIHS R+R+ + +R+ R T G+R+ +R
Sbjct: 268 SNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSR 321
>7297018 [G] KOG3765 Predicted glycosyltransferase
Length = 608
Score = 28.5 bits (62), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 14 KRLAASVAGVGKRKIWMDPSETAEIA 39
KR+ AS GV K K WM +ET E++
Sbjct: 476 KRVCASCHGVPKSKEWMSANETDELS 501
>At1g59910_2 [TZ] KOG1922 Rho GTPase effector BNI1 and related formins
Length = 474
Score = 28.5 bits (62), Expect = 6.0
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
Query: 13 QKRLAASVAGVGKRKIWMDPSETAEIAQANSRNAIRKLVKNGTIVKKPTRIHSRS 67
Q+R A +VAG P+ET +A A RNA+R + + + +R S S
Sbjct: 419 QQRPATTVAGASS-----SPAETPSVAAAPQRNAVRFPILPPNFMSESSRYSSSS 468
>HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 28.1 bits (61), Expect = 7.9
Identities = 26/84 (30%), Positives = 40/84 (46%), Gaps = 9/84 (10%)
Query: 23 VGKRKIWMDPSETAEIAQANSRNAIRKL-------VKNGTIVKKPTR-IHSRSRTRAMAE 74
VGK K PS +++ SR+ R++ V+ G +K R SRSR++A +
Sbjct: 283 VGKPKS-RSPSRHKSKSKSRSRSQERRVEEEKRGSVEQGQEQEKSLRQSRSRSRSKAGSR 341
Query: 75 SKRNGRHTGYGKRKGTKEARLPSQ 98
S+ R KRK K +R S+
Sbjct: 342 SRSRSRSKSKDKRKSRKRSREESR 365
>Hs7662492 [AK] KOG0132 RNA polymerase II C-terminal domain-binding protein
RA4 contains RPR and RRM domains
Length = 1271
Score = 28.1 bits (61), Expect = 7.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 57 VKKPTRIHSRSRTRAMAESKRNGRHTGYGKRKGTKEARLPSQ 98
V+ +R HSRSR+R+ +R+ +G KRK K +R S+
Sbjct: 396 VRSRSRTHSRSRSRS-PRKRRSRSRSGSRKRKHRKRSRSRSR 436
>Hs5902130 [A] KOG2548 SWAP mRNA splicing regulator
Length = 659
Score = 28.1 bits (61), Expect = 7.9
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 11/46 (23%)
Query: 64 HSRSRTRAMAESK-----------RNGRHTGYGKRKGTKEARLPSQ 98
H+RSR+R+ + S+ R RH+G G R G + +R P++
Sbjct: 399 HARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPAR 444
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,301,577
Number of Sequences: 60738
Number of extensions: 265230
Number of successful extensions: 859
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 51
length of query: 195
length of database: 30,389,216
effective HSP length: 101
effective length of query: 94
effective length of database: 24,254,678
effective search space: 2279939732
effective search space used: 2279939732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)