ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3204 good JK KOG2038 Transcription CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein
r_klactV3204 good JK KOG2038 Translation, ribosomal structure and biogenesis CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3204 1110868 1107851 -1006
(1006 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR060w [JK] KOG2038 CAATT-binding transcription factor/60S ribo... 903 0.0
SPAC4F10.09c [JK] KOG2038 CAATT-binding transcription factor/60S... 492 e-138
Hs5031625 [JK] KOG2038 CAATT-binding transcription factor/60S ri... 307 6e-83
At1g72440 [JK] KOG2038 CAATT-binding transcription factor/60S ri... 212 2e-54
CE09599 [JK] KOG2038 CAATT-binding transcription factor/60S ribo... 196 2e-49
7294771 [JK] KOG2038 CAATT-binding transcription factor/60S ribo... 146 1e-34
Hs20806097 [JU] KOG2153 Protein involved in the nuclear export o... 52 5e-06
>YDR060w [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal subunit
biogenesis protein
Length = 1025
Score = 903 bits (2333), Expect = 0.0
Identities = 500/1004 (49%), Positives = 636/1004 (62%), Gaps = 58/1004 (5%)
Query: 42 AKEETAVTNEELIREALSLGASEKDVQLVDGVDDD---ASEIEFN-----EAD------- 86
A + NE++ REAL+LGASE+D++L+ G+ DD SE EF+ +AD
Sbjct: 41 ASSNSKKVNEDIRREALALGASEEDLKLIQGLSDDDDAKSEQEFDAVADEDADDKGFKND 100
Query: 87 ---------------EEVDDEFKSDFSALLKNMGFDKLXXXXXXXXXXXXXDAGXXXXXX 131
E+VDD+ + S K
Sbjct: 101 LQNFMKNVGFDQHKLEDVDDDDIEEESTSSKESKIPAQEKEHAQSNIASSTIEKTSQESI 160
Query: 132 XXXXXXXXXXXXXXXXXXXXXPLSPKPAEKKKEDQSD--MITQTHIVQSDKLLVPSDLLW 189
P S + AEK+K+++ D +ITQT I+ SDKL++P D W
Sbjct: 161 DNGSEQEENTVEEANLSSDQEPES-ESAEKEKKEEKDGGLITQTTIISSDKLIIPYDKPW 219
Query: 190 YEVPLDPELTREQD--PLTKEQIDKLYQRGKEALELDNTNYYEEFTKNSSQRKFMSQILS 247
YE+PLDP++ + D L+KEQI+KL++RGK+ LE DN YYEEFTK+SSQ KFMSQILS
Sbjct: 220 YEIPLDPQVGQNDDVEELSKEQIEKLFERGKQTLEADNQTYYEEFTKDSSQAKFMSQILS 279
Query: 248 DGTLNDKISALTLLLQESPLHNIKSLDSLISFCGKKSRNSALQALNALKDLFLNGLLPDR 307
DGTLNDKISA+TLL+Q+SPLHN KSL++L+S+CGKKSRNSALQ+LNALKDLFLNGLLP+R
Sbjct: 280 DGTLNDKISAVTLLIQDSPLHNTKSLETLVSYCGKKSRNSALQSLNALKDLFLNGLLPNR 339
Query: 308 KLKYFKNQ-NLSMLLNKRTLAILYFEDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTHIF 366
KL+YFKNQ LSM+LNK+TLAI YFEDYLK L+F++LE+ E LSHDPII+VR+Q+L H+F
Sbjct: 340 KLRYFKNQPGLSMMLNKKTLAIFYFEDYLKKLFFRVLEVLEVLSHDPIIHVRLQILNHVF 399
Query: 367 DLLTAKPEQEFNLLKLGVNKLGDIDNKVASKASFKLLKLETQHPNMKSXXXXXXXXXXXR 426
DLLT +PEQEFNLL+LGVNK+GDID+KV+SKAS+ LLKLE HPNMKS R
Sbjct: 400 DLLTNQPEQEFNLLRLGVNKIGDIDSKVSSKASYLLLKLEQAHPNMKSIVIDAIVDIALR 459
Query: 427 PQADYHTTYYSALTLNQTILKRSEKNLANQLIKTYFTLFEKFLIQTDADNXXXXXXXXXX 486
P ADYHTTYYS +TLNQTILKRSE ++AN+L+KTYFTLFEKFLI TD DN
Sbjct: 460 PNADYHTTYYSVITLNQTILKRSEDSVANKLVKTYFTLFEKFLINTDKDNTNGVVKSNSK 519
Query: 487 XXXXXXXXXXXXXXXXXXXXXXXXXXXAQEVIEEKNTKLFGAILTGLNRAFPFSDMPGSV 546
EV++EKN+KLF A+LTG+NRAFPF+ +P SV
Sbjct: 520 SYEEKRKKNFKKGKHGGKSVKIEKTE--NEVLDEKNSKLFSALLTGINRAFPFAQIPASV 577
Query: 547 YEIHLDTLFKITHASNFNTSIQALVLIHQVVVKTNITSDRYYKTLYESLLDPRLVSSSKQ 606
YE+H++TLFKITH+SNFNTSIQALVLI+QV VK + SDRYY+TLYESL DPRLV+SSKQ
Sbjct: 578 YEVHMETLFKITHSSNFNTSIQALVLINQVTVKAKLNSDRYYRTLYESLFDPRLVNSSKQ 637
Query: 607 GIYLNLLYKSLKDDK-DIGRVDAFVKRILQVCAHWLNIGAISGMFFLLIQLSKSLPQIRN 665
GIYLNLLYKSLK D ++ RV+AFVKRILQVC+HWLN+G I+G FFLLIQL+K++PQI+N
Sbjct: 638 GIYLNLLYKSLKQDALNVERVEAFVKRILQVCSHWLNVGTITGFFFLLIQLAKTVPQIKN 697
Query: 666 VLINSPLDSVYESD-DEDSRDKTKEKPGYDSRKRDPKYANAENSSLWEINQFLSHFHPTV 724
+L N+P+D YESD +E+ DK ++ YD RKRDPK+ANAE SSLWEIN F++HFHPTV
Sbjct: 698 LLTNTPVDYEYESDAEEEQGDKDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTV 757
Query: 725 QSYAQGFFDGDTQETRELVKPDLGLFTLAHFLDRFVYRNAKQKPTTRGSSIMQPL--GGV 782
++YA + G ET ++ KPDLGLFTL+HFLDRFVYR+AKQ T RG+SIMQPL G
Sbjct: 758 KTYANAYVTG---ETEQIAKPDLGLFTLSHFLDRFVYRSAKQTNTARGTSIMQPLFSGSR 814
Query: 783 HTGSLLVKASDTTLHEVPANTENWLSKKVQDIKPDEKFFYQYFSTKTNAIKSTKSGAEDE 842
S+LVKASD + P NTE+WL+KKV+DIKP++KFFYQYF+TK K+ +
Sbjct: 815 VNDSVLVKASDIMHDQGPVNTEDWLTKKVEDIKPEDKFFYQYFTTK----KTADGKGKKS 870
Query: 843 NGTAXXXXXXXXXXXXXXXALVKSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIDL 902
N + ALVKSRP ID
Sbjct: 871 NKASNFDSDDEMDENEIWSALVKSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDD 930
Query: 903 KXXXXXXXXXXXXXXXXXXXXXXPEDISDFDPEEAKLFEDNLEDEVKSDEDVFYSAADDS 962
+ D + ++ + F ++ E++ S+E+
Sbjct: 931 EDAKSEGSQESDQEEGLDEDIFYSFDGEQDNSDKKRSFAESSEEDESSEEE--------- 981
Query: 963 SQESDVEDTXXXXXXXXXXXXXXXXXXTFASAEDYAQYLNSDEE 1006
+E + ++ FASA+DYAQYL+ D +
Sbjct: 982 KEEEENKEVSAKRAKKKQRKNMLKSLPVFASADDYAQYLDQDSD 1025
>SPAC4F10.09c [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 860
Score = 492 bits (1266), Expect = e-138
Identities = 282/715 (39%), Positives = 410/715 (56%), Gaps = 57/715 (7%)
Query: 154 LSPKPAEKKKEDQSDMITQTHIVQSDKLLVPSDLLWYEVPLDPELTREQDPLTKEQIDKL 213
L PKP +K ++ T + ++ + WY +PL PEL ++ + + + +L
Sbjct: 4 LYPKPKRGQKIIFNEEGEGTIDTKPQGVMFDPGVPWYNIPL-PELHEDKKFVNVDHVSEL 62
Query: 214 YQRGKEALELDNTNYYEEFTKNSSQRKFMSQILSDGTLNDKISALTLLLQESPLHNIKSL 273
RG L+ D+ + E ++ ++ + ++S GT +D+ISALTLL+QESP+H +K+L
Sbjct: 63 ETRGLLLLKEDSERFSETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKAL 122
Query: 274 DSLISFCGKKSRNSALQALNALKDLFLNGLLPDRKLKYFKNQNL--SMLLNKRTLAILYF 331
++L+S C KKSRN A QA+ LKDLF+ GLLPDRKLKY K Q+ S + + L + F
Sbjct: 123 ETLLSICSKKSRNEATQAITTLKDLFIGGLLPDRKLKYMKQQSCLGSKNVTDKHLMVWAF 182
Query: 332 EDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTHIFDLLTAKPEQEFNLLKLGVNKLGDID 391
E +LK YFK ++I E LS D +++V+ Q+++ I+DLL AKPEQE NLLKL +NKLGD +
Sbjct: 183 ESFLKSFYFKYIQIIEALSFDALLFVKSQMVSTIYDLLKAKPEQEQNLLKLLINKLGDKE 242
Query: 392 NKVASKASFKLLKLETQHPNMKSXXXXXXXXXXXRPQADYHTTYYSALTLNQTILKRSEK 451
NK+ASKAS+ +L+LE HP MK P + YY+ +TLNQT+L +
Sbjct: 243 NKIASKASYSILQLEASHPAMKLVITKEIERFIFAPSTSRTSCYYTLITLNQTVLTHKQV 302
Query: 452 NLANQLIKTYFTLFEKFLIQTDADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 511
++AN LI+ YF F K L + +
Sbjct: 303 DVANLLIEIYFVFFTKLLFALEKEE-------VADAPTLEKKSLQSDSKNKKSQKRKKDE 355
Query: 512 XXAQEVIEEKNTKLFGAILTGLNRAFPFSDMPGSVYEIHLDTLFKITHASNFNTSIQALV 571
+E E N+++ A+LTG+NRA+PF+++ ++ H++TLF ITH ++FNTS+Q L+
Sbjct: 356 DLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASFNTSVQVLM 415
Query: 572 LIHQVVVKTNITSDRYYKTLYESLLDPRLVSSSKQGIYLNLLYKSLKDDKDIGRVDAFVK 631
LI Q + SDRYYK+LYESLLDPRL +SSKQ +YLNLLYKSL D +I RV AF+K
Sbjct: 416 LIFQASASRDFISDRYYKSLYESLLDPRLTTSSKQSLYLNLLYKSLIIDNNIPRVRAFIK 475
Query: 632 RILQVCAHWLNIGAISGMFFLLIQLSKSLPQIRNVLINSPL-------DSVYESDDED-- 682
R++QV A W ++G+F ++ QL + +R++ N+ + + V++ +ED
Sbjct: 476 RMVQVSA-WQQPPLVTGLFHVMHQLVIATTALRSMFTNAEIHDFDGDEEEVFKDVEEDDV 534
Query: 683 ----------------------------SRDKTKEKPGYDSRKRDPKYANAENSSLWEIN 714
S KE YD RKRDP+Y+NA+ S LWEI+
Sbjct: 535 SEDQKVDSDKDGKLSDKQSHSAYVVGNVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIH 594
Query: 715 QFLSHFHPTVQSYAQGFFDGDTQETRELVKPDLGLFTLAHFLDRFVYRNAKQKPTTRGSS 774
FL+HFHPTV A+ G+ + L KP+L L TL HFLD+F YRN K+ RG S
Sbjct: 595 PFLNHFHPTVSLLAKSLVYGE----KILGKPNLSLHTLNHFLDKFAYRNPKKSAAARGHS 650
Query: 775 IMQPL-GGVHTGSLLVKASDTTLHEVPANTENWLSKKVQDIKPDEKFFYQYFSTK 828
IMQPL GG+ G + +T VP N+E + SKK ++I DE FFY++F+ K
Sbjct: 651 IMQPLAGGLSKGYV----PGSTYSGVPMNSEQFTSKKQEEIPVDELFFYRFFNDK 701
>Hs5031625 [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 998
Score = 307 bits (786), Expect = 6e-83
Identities = 229/744 (30%), Positives = 344/744 (45%), Gaps = 130/744 (17%)
Query: 161 KKKEDQSDMITQTHIVQSDKLLVPSDLLWYEVPLDPELTREQDPLTKEQIDKLYQRGKEA 220
K K+D+ ++ + LL+ WY++ E + + P + + Y+ +
Sbjct: 158 KVKKDKQNIF---EFFERQTLLLRPGGKWYDLEYSNEYSLKPQP---QDVVSKYKTLAQK 211
Query: 221 LELDNTNYYEEFTKNS--SQRKFMSQILSDGTLNDKISALTLLLQESPLHNIKSLDSLIS 278
L N ++ T + + +M I+S GTL D+++A+ LL+Q+ +H ++ +++L++
Sbjct: 212 LYQHEINLFKSKTNSQKGASSTWMKAIVSSGTLGDRMAAMILLIQDDAVHTLQFVETLVN 271
Query: 279 FCGKK-SRNSALQALNALKDLFLNGLLPD-RKLKYFKNQNLSMLL-----NK----RTLA 327
KK S+ L AL+ K+L + LLPD RKL+ F + L NK R L
Sbjct: 272 LVKKKGSKQQCLMALDTFKELLITDLLPDNRKLRIFSQRPFDKLEQLSSGNKDSRDRRLI 331
Query: 328 ILYFEDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTHIFDLLTAKPEQEFNLLKLGVNKL 387
+ YFE LK L + +++ E LSHD ++ + + LT +LL KPE+E LL VNKL
Sbjct: 332 LWYFEHQLKHLVAEFVQVLETLSHDTLVTTKTRALTVAHELLCNKPEEEKALLVQVVNKL 391
Query: 388 GDIDNKVASKASFKLLKLETQHPNMKSXXXXXXXXXXXRPQADYHTTYYSALTLNQTILK 447
GD N++A+KAS L L +HPNMK R YY+ LNQ L
Sbjct: 392 GDPQNRIATKASHLLETLLCKHPNMKGVVSGEVERLLFRSNISSKAQYYAICFLNQMALS 451
Query: 448 RSEKNLANQLIKTYFTLFEKFLIQTDADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 507
E LAN+LI YF F + + D +
Sbjct: 452 HEESELANKLITVYFCFFRTCVKKKDVE-------------------------------- 479
Query: 508 XXXXXXAQEVIEEKNTKLFGAILTGLNRAFPFSDMPGSVYEIHLDTLFKITHASNFNTSI 567
+K+ A+LTG+NRA+P+S +DTLFK+ H NFNTS+
Sbjct: 480 ---------------SKMLSALLTGVNRAYPYSQTGDDKVREQIDTLFKVLHIVNFNTSV 524
Query: 568 QALVLIHQVVVKTNITSDRYYKTLYESLLDPRLVSSSKQGIYLNLLYKSLKDDKDIGRVD 627
QAL+L+ QV+ SDRYY LY +LDP L++ SKQ ++LNL+YKSLK D + RV
Sbjct: 525 QALMLLFQVMNSQQTISDRYYTALYRKMLDPGLMTCSKQAMFLNLVYKSLKADIVLRRVK 584
Query: 628 AFVKRILQVCAHWLNIGAISGMFFLLIQLSKSLPQIRNVLINSPLDSVYE-----SDDED 682
AFVK +LQV + I G +L+ ++ K+ P +R+ L + P E +DDED
Sbjct: 585 AFVKGLLQVTCQQMP-PFICGALYLVSEILKAKPGLRSQLDDHPESDDEENFIDANDDED 643
Query: 683 SRDKT------------------------------------------KEKPGYDSRKRDP 700
T K+ YD R+P
Sbjct: 644 MEKFTDADKETEIVKKLETEETVPETDVETKKPEVASWVHFDNLKGGKQLNKYDPFSRNP 703
Query: 701 KYANAENSSLWEINQFLSHFHPTVQSYAQGFFDGDTQETRELVKPDLGLFTLAHFLDRFV 760
+ AEN+SLWE+ + HFHP+V +A+ G+ + D FTL FLDRFV
Sbjct: 704 LFCGAENTSLWELKKLSVHFHPSVALFAKTILQGNYIQYSGDPLQD---FTLMRFLDRFV 760
Query: 761 YRNAK--QKPTTRGSSIMQPLGGVHTGSLLVKASDTTLHEVPANTENWLSKKVQDIKPDE 818
YRN K + S +MQP K + +P N++ +L+K+ I DE
Sbjct: 761 YRNPKPHKGKENTDSVVMQPKR---------KHFIKDIRHLPVNSKEFLAKEESQIPVDE 811
Query: 819 KFFYQYFSTKTNAIKSTKSGAEDE 842
FF++Y+ K A+K + DE
Sbjct: 812 VFFHRYY--KKVAVKEKQKRDADE 833
>At1g72440 [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 1056
Score = 212 bits (540), Expect = 2e-54
Identities = 172/587 (29%), Positives = 275/587 (46%), Gaps = 56/587 (9%)
Query: 156 PKPAEKKKEDQSDMITQTHIVQSDKL----LVPSDLL---WYEVPLDPELT----REQDP 204
PKP +D+S + + L LV + LL WY + E R+
Sbjct: 104 PKPGFLSIDDESTGYKKKRFDEFKSLPKLPLVKASLLSSEWYNDAAEFEEKVFGGRKVAV 163
Query: 205 LTKEQIDKLYQRGKEALELDNTNYYEEFTKNSSQRKFMSQILS---DGTLNDKISALTLL 261
KE + ++ +E E Y E+F + + M ++S GT+ DKI+A ++
Sbjct: 164 ANKEDFKGVVEKKRELGERLMWQYAEDFATSKGKGGDMKMVISAQKSGTVADKITAFEIM 223
Query: 262 LQESPLHNIKSLDSLISFCGKK-SRNSALQALNALKDLFLNG------------LLPDRK 308
+ E+P+ N++SLD+L+ K + A + L AL ++ + LLPDRK
Sbjct: 224 VGENPIANMRSLDALLGMVTSKVGKRFAFKGLKALSEILIRHIFLTHTMSYGFMLLPDRK 283
Query: 309 LKYFKNQNLSMLLNKRT----LAILYFEDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTH 364
LK + L+++ + L Y+ED LK Y + + ++ S D + ++ + L
Sbjct: 284 LKSLLQRPLNIIPENKDGYSLLLFWYWEDCLKQRYERFVTALDESSKDMLPELKDKALKT 343
Query: 365 IFDLLTAKPEQEFNLLKLGVNKLGDIDNKVASKASFKLLKLETQHPNMKSXXXXXXXXXX 424
I+ +LT+K EQE LL VNKLGD NK AS A + L L HPNMK+
Sbjct: 344 IYFMLTSKSEQERKLLVSLVNKLGDPQNKSASNADYHLTNLLADHPNMKAVVIDEVDSFL 403
Query: 425 XRPQADYHTTYYSALTLNQTIL--KRSEKNLANQLIKTYFTLFEKFLIQTDADNXXXXXX 482
RP Y++ L+Q L K + +A +LI YF LF+ ++ T+A+
Sbjct: 404 FRPHLGLRAKYHAVNFLSQIRLSHKGEDPKVAKRLIDVYFALFK--VLTTEANRKQGADD 461
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEVIEEKNTKLFGAILTGLNRAFPF--S 540
E ++++ A+LTG+NRAFP+ +
Sbjct: 462 KGAADKKKSNPKDTKQEVSTDSPI-------------ELDSRILSALLTGVNRAFPYVST 508
Query: 541 DMPGSVYEIHLDTLFKITHASNFNTSIQALVLIHQVVVKTNITSDRYYKTLYESLLDPRL 600
D + E LFK+ H++NFN +Q+L+L+ ++ K I SDR+Y+ LY LL P
Sbjct: 509 DEADDIIESQTPVLFKLVHSANFNVGVQSLMLLDKISSKNKIVSDRFYRALYSKLLLPSA 568
Query: 601 VSSSKQGIYLNLLYKSLKDDKDIGRVDAFVKRILQVCAHWLNIGAISGMFFLLIQLSKSL 660
++SSK +++ LL +++K+D +I RV AF KR+LQV A G FLL ++ KS
Sbjct: 569 MNSSKAEMFIGLLLRAMKNDINIKRVAAFSKRVLQVALQQPPQYA-CGCLFLLSEVLKSR 627
Query: 661 PQIRNVLINSPLDSVYESDDEDSRDKTKEKPGYDSRKRDPKYANAEN 707
P + +++ +SV E +D + + E D K K N EN
Sbjct: 628 PPLWKMVVQR--ESVEEEEDIEHFEDVIEGDDVDPNK---KAENDEN 669
Score = 63.5 bits (153), Expect = 2e-09
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 23/171 (13%)
Query: 672 LDSVYE-SDDEDSRDKTKEKP-----GYDSRKRDPKYANAENSSLWEINQFLSHFHPTVQ 725
L+ V E S+D + R + +P GYD R R+P Y NA+ +S WE+ H HP+V
Sbjct: 722 LEEVMEVSNDMEKRSQPPMRPSSLPGGYDPRHREPSYCNADRASWWELGVLSKHAHPSVA 781
Query: 726 SYAQGFFDGDTQETRELVKPDLGLFTLAHFLDRFVYRNAKQKPTTRGSSIMQPLGGVHTG 785
+ A G DL +L FLD+F+ + KQ T G S ++P +
Sbjct: 782 TMAGTLLSGTNIVYNGNPLNDL---SLTAFLDKFMEKKPKQN-TWHGGSQIEPSKKLDMS 837
Query: 786 SLLVKASDTTLHEVPANTENWLSKKVQDIKPDEKFFYQYFSTKTNAIKSTK 836
+ ++ A +L E D+ P++ F++++ K + K +K
Sbjct: 838 NRVIGAEILSLAE-------------GDVAPEDLVFHKFYVNKMTSTKQSK 875
>CE09599 [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 953
Score = 196 bits (497), Expect = 2e-49
Identities = 184/770 (23%), Positives = 312/770 (39%), Gaps = 148/770 (19%)
Query: 153 PLSPKPAEKKKEDQSDMITQTHIVQSDKLLVPSD--LLWYEVPLDPELTREQDPLTKEQI 210
P++ KPA + +Q + I+ D +LV WY +D + + + +I
Sbjct: 66 PVAHKPANPENSNQKRQFKK--ILGQDGILVKHQEGTKWYSYQIDHVHDEKTEKMNASEI 123
Query: 211 DKLYQRGKEALELDNTNYY-EEFTKNSSQRKFMSQILSDGTLNDKISALTLLLQESPLHN 269
KL + GK+ + D +E N S+ ++ ++S GT DK +A+ L + +SP+H+
Sbjct: 124 QKLLEEGKDEMAQDAALLQTKEKQDNGSEASWLYSVISKGTATDKRTAMQLQMHKSPVHS 183
Query: 270 IKSLDSLISFCGKKSRNSALQALNALKDLFLNGLLPD-RKLKYFKNQNLSML-------- 320
++ ++ LI+ C K+ + + L+D+F+N LP+ RKL F + L L
Sbjct: 184 LEYIEKLIASCKKQGTRDVVDIIPILEDVFINHCLPENRKLIPFSKRALRELTELSSGNQ 243
Query: 321 -LNKRTLAILYFEDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTHIFDLLTAKPEQEFNL 379
L ++ L + FE LK LY + +E ++ P+ V + L + + L +PE E +
Sbjct: 244 RLRRKILLMWAFEHELKILYQQFIETLVEIIKRPLEEVIKRSLKTLANCLMGRPESENLI 303
Query: 380 LKLGVNKLGDIDNKVASKASFKLLKLETQHPNMKSXXXXXXXXXXXRPQADYHTTYYSAL 439
L VN G + K+ + L + +HP M+ R + Y+
Sbjct: 304 LSALVNAFGHPNYKIGAFTVVLLEGISRKHPAMRIVMVEEIERLAFRKNVNERAHLYAMT 363
Query: 440 TLNQTILKRSEKNLANQLIKTYFTLFEKFLIQTDADNXXXXXXXXXXXXXXXXXXXXXXX 499
L+Q + + +L +L+ Y +LF+ + + DN
Sbjct: 364 FLSQMKFSKKDSDLCCRLMSIYLSLFKTIVGKKITDN----------------------- 400
Query: 500 XXXXXXXXXXXXXXAQEVIEEKNTKLFGAILTGLNRAFPFSDMPGSVYEIHLDTLFKITH 559
+L IL G NRAFPF+ + E D F + H
Sbjct: 401 ------------------------RLLPIILAGANRAFPFAKDADKLLEDVKDVYF-LAH 435
Query: 560 ASNFNTSIQALVLIHQVVVKTNITSDRYYKTLYESLLDPRLVSSSKQGIYLNLLYKSLKD 619
SN+ T+I AL L+ Q + SDR+Y LY LLD + Q L L++ ++K+
Sbjct: 436 NSNYRTAIPALKLLFQFHKMNDYVSDRFYNALYRKLLDNCPAGAYAQ--LLKLMFDTMKE 493
Query: 620 DKDIGRVDAFVKRILQVCAH------------WLNIGAISGMFFLLIQLSKSLPQIRNVL 667
D RV FVKR+LQV + + + G L+ LSK + V+
Sbjct: 494 DSSAQRVRTFVKRLLQVAVNSQPDFTASILILISRLQKLRGTTEKLVVLSKDIDPAARVV 553
Query: 668 INSPLDSVYES-----------------------------DDEDSRDKTKEKPG------ 692
D E ++ + DK K +PG
Sbjct: 554 AQMQNDEDDEERYVDLDVEGNEISRNGVKKEEKEEEDIVIEENEDEDKKKVQPGKLGASS 613
Query: 693 -----------------YDSRKRDPKYANAENSSLWEINQFLSHFHPTVQSYAQGFFDGD 735
YDS R+P + +A +++ E+ H+HP+V +A+ +G
Sbjct: 614 SGGWVHRSIGARGAKTPYDSVARNPLFVDASHTADSELLLLSKHYHPSVAVFAKALMEG- 672
Query: 736 TQETRELVKPDLGL--FTLAHFLDRFVYRNAKQKPTTRGSSIMQPLGGVHTGSLLVKASD 793
RE+ L FTL FLDRF +RN K T G+ I++ KA D
Sbjct: 673 ----REINYGGEALNDFTLMAFLDRFAFRNPKDVTKTTGTRIVRK-----------KAHD 717
Query: 794 T-TLHEVPANTENWLSKKVQDIKPDEKFFYQYFSTKTNAIKSTKSGAEDE 842
+ ++ + + K+ ++I DE+F ++Y S+ K K +D+
Sbjct: 718 PWGVRKLAVGSNEYTQKRREEIPADERFLHRYTSSLQKEKKVKKENGDDD 767
>7294771 [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 1016
Score = 146 bits (369), Expect = 1e-34
Identities = 171/680 (25%), Positives = 270/680 (39%), Gaps = 133/680 (19%)
Query: 164 EDQSDMITQTHIVQSDKLLVP--SDLLWYEVPLDPELTREQDPLTKEQIDKLYQRGKEAL 221
E+ D I++ H K+ S WY V D T E + + +LY K +
Sbjct: 213 EELGDSISKKHNKYQSKIDEDEESQKKWYHVHPDYPSTDEVLDMKENDQLELYNLCKNSF 272
Query: 222 ELDNTNYYEEFTKNSSQRKFMSQILSDGTLNDKISALTLLLQESPLHNIKSLDSLISFCG 281
E + + + +N S +++ L GT D+ +A LL+ +PL N+++L +LI FC
Sbjct: 273 EAEKITFNK---RNPSDARWLQTALHKGTAKDRANAGALLVTSNPLGNLEALSTLIGFC- 328
Query: 282 KKSRNSALQALNALKDLFLNGLLP-DRKL-----------KYFKNQNLSMLLNKRTLAIL 329
K S ++ + L DL+ LLP +RKL K K++NL +R A
Sbjct: 329 KISNKASNDVIAVLTDLWQEVLLPPNRKLLAVHTRGADWKKLKKDENLRNEQKRRIYAYW 388
Query: 330 YFEDYLKGLYFKILEIFEKLSHDPIIYVRMQVLTHIFDLLTAKPEQEFNLLKLGVNKLGD 389
+FE LK Y + L+ + + + + LL PE+E LL + VNKLGD
Sbjct: 389 HFESELKDQYHEFLKNVMQGLQTGQEHNKNSSIVSAARLLAYAPEKEQLLLTMLVNKLGD 448
Query: 390 IDNKVASKASFKLLKLETQHPNMKSXXXXXXXXXXXRPQADYHTTYYSALTLNQTILKRS 449
K+ASKA L ++ +HPNM R ++ AL +I
Sbjct: 449 PIAKIASKALHHLSEVAQKHPNMCGVIVAEAEKLLFRNNISERAQHF-ALCFLSSIAPSG 507
Query: 450 EKNLANQLIKTYFTLFEKFLIQTDADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 509
+ +L+ F LF K L+Q A
Sbjct: 508 RPEVCTKLVNICFALF-KVLVQKGA----------------------------------- 531
Query: 510 XXXXAQEVIEEKNTKLFGAILTGLNRAF----PFSDMPGSVYEIHL-DTLFKITHASNFN 564
N + AIL L +A P D G + + DT++++ H ++
Sbjct: 532 -----------VNNRTMQAILRCLQKAIVEAKPAKDSNGELLTKEMQDTIYRLVHLADIR 580
Query: 565 TSIQALVLIHQVVVKTNITSDRYYKTLYESLLDPRL--VSSSKQGIYLNLLYKSLKDDKD 622
++Q L L+ Q+V SDR+Y LY LLD L V S L+++++++ D
Sbjct: 581 VAVQTLGLLLQLVAVKTEKSDRFYNALYVKLLDLNLINVGSKTAAHLLHIVHRAIHIDNH 640
Query: 623 IGRVDAFVKRILQVCAH---WLNIGAISGMFFLL---------IQLSKSLPQIRNVL--I 668
+ R AFVKR+LQ+ + + G + + LL S+ + + V+ I
Sbjct: 641 VARAQAFVKRLLQLTLYAPPHIAAGCLIVIHKLLRMRRELIGGTGASEEVEEGSKVVLPI 700
Query: 669 NSPLDSVYESDDE-------DSRDKTKEKP------------------------------ 691
++ LD + SDDE D D TK+
Sbjct: 701 SADLDK-FGSDDEEVYEDVKDEADDTKDSNPLEEKADNDVKSSASSWHHARVAATEAKVR 759
Query: 692 -----GYDSRKRDPKYANAENSSLWEINQFLSHFHPTVQSYAQGFFDGDTQETRELVKPD 746
YD R P +A A + E+ H+HPTVQ +A+ Q +
Sbjct: 760 DIDSCKYDPYHRVPAFAGAAYALRHELLLLRQHYHPTVQVFAEQILQ---QSRIDYYGDP 816
Query: 747 LGLFTLAHFLDRFVYRNAKQ 766
L F L HFL+RF ++N K+
Sbjct: 817 LRDFGLPHFLERFAFKNPKK 836
>Hs20806097 [JU] KOG2153 Protein involved in the nuclear export of
pre-ribosomes
Length = 800
Score = 52.0 bits (123), Expect = 5e-06
Identities = 45/199 (22%), Positives = 82/199 (40%), Gaps = 23/199 (11%)
Query: 581 NITSDRYYKTLYESLLDPRLVSSSKQGIY-----LNLLYKSLKDDKDIGRVDAFVKRILQ 635
NI ++Y LY++L ++ +G+ L+++ + R AF+KR+
Sbjct: 574 NIDPLKFYTHLYKTLFKLH-AGATNEGVEIVLQCLDVMLTKRRKQVSQQRALAFIKRLCT 632
Query: 636 VCAHWLNIGAISGMFFLLIQLSKSLPQIRNVLINSPLDSVYESDDEDSRDKTKEKPGYDS 695
+ H L +I G+ L + P+ +L D +S+ P D
Sbjct: 633 LALHVLPNSSI-GILATTRILMHTFPKTDLLL------------DSESQGSGVFLPELD- 678
Query: 696 RKRDPKYANAENSSLWEINQFLSHFHPTVQSYAQGFFDGDTQETRELVKPDLGLFTLAHF 755
+P+Y NA+N++LWE++ H+HP VQ +A G E +KP+L +
Sbjct: 679 ---EPEYCNAQNTALWELHALRRHYHPIVQRFAAHLIAGAPSEGSGALKPELSRRSATEL 735
Query: 756 LDRFVYRNAKQKPTTRGSS 774
+ + P S+
Sbjct: 736 FEAYSMAEMTFNPPVESSN 754
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.133 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,368,139
Number of Sequences: 60738
Number of extensions: 1901821
Number of successful extensions: 5863
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5805
Number of HSP's gapped (non-prelim): 35
length of query: 1006
length of database: 30,389,216
effective HSP length: 116
effective length of query: 890
effective length of database: 23,343,608
effective search space: 20775811120
effective search space used: 20775811120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)