ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3218 suspect: HSP K KOG2588 Transcription Predicted DNA-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3218 1113630 1112443 -396
(396 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 [K] KOG2588 Predicted DNA-binding protein 76 8e-14
YOR032c [K] KOG2588 Predicted DNA-binding protein 71 2e-12
SPBC354.05c [K] KOG2588 Predicted DNA-binding protein 69 1e-11
>SPBC19C2.09 [K] KOG2588 Predicted DNA-binding protein
Length = 900
Score = 76.3 bits (186), Expect = 8e-14
Identities = 50/127 (39%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 139 VSGGGGAAVNHSGNTSSGHNDSEKKYRNNINTHFQFLRNSVPTLRWCD----DNSIPVES 194
V+G GG + HN EK+YR N+N LR++VP+LR NS+ E
Sbjct: 253 VAGPGGKP------KKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDED 306
Query: 195 LEGLAPPSKVNKVQILSKSHEYIKHLERKNSLLQQENEQLRMQLAQFMPGHHNSPGSPNM 254
L GL P K+NK IL+K+ EYI+HLE KN LQ+ N+QL +LA + P +
Sbjct: 307 LGGLTPARKLNKGTILAKATEYIRHLEAKNKELQKTNKQLSDRLAFYEDPSMAPPSNDTR 366
Query: 255 NHNSIMV 261
NS+ V
Sbjct: 367 AVNSVNV 373
>YOR032c [K] KOG2588 Predicted DNA-binding protein
Length = 434
Score = 71.2 bits (173), Expect = 2e-12
Identities = 46/109 (42%), Positives = 60/109 (54%), Gaps = 8/109 (7%)
Query: 157 HNDSEKKYRNNINTHFQFLRNSVPTLR--WCDDNSIPVES-----LEGLAPPSKVNKVQI 209
HN EKKYR+NIN + LR +VPTLR + N +P+ S L+GL P +K+NK I
Sbjct: 271 HNIIEKKYRSNINDKIEQLRRTVPTLRVAYKKCNDLPITSRDLADLDGLEPATKLNKASI 330
Query: 210 LSKSHEYIKHLERKNSLLQQENEQLRMQLAQFMPGHHNSPGSPNMNHNS 258
L+KS EYI HLERK L N+ L H P P +++S
Sbjct: 331 LTKSIEYICHLERKCLQLSLANQHLSNDTRDSFV-HLTEPSQPLSDNSS 378
>SPBC354.05c [K] KOG2588 Predicted DNA-binding protein
Length = 793
Score = 68.9 bits (167), Expect = 1e-11
Identities = 40/89 (44%), Positives = 57/89 (63%), Gaps = 3/89 (3%)
Query: 155 SGHNDSEKKYRNNINTHFQFLRNSVPTLRWCDDNSIPVESLEGLAPP--SKVNKVQILSK 212
S HN EK+YR+N+N LR++VPTLR NS + L+G P K+NK ILSK
Sbjct: 429 SAHNMIEKRYRSNLNDKIAELRDAVPTLR-SGYNSTTADELKGTYVPLSRKLNKATILSK 487
Query: 213 SHEYIKHLERKNSLLQQENEQLRMQLAQF 241
+ EYIK L+ KN L +EN+ L+ +L+++
Sbjct: 488 ATEYIKSLQSKNKKLIEENKILQKRLSEY 516
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,704,566
Number of Sequences: 60738
Number of extensions: 778793
Number of successful extensions: 2953
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2949
Number of HSP's gapped (non-prelim): 3
length of query: 396
length of database: 30,389,216
effective HSP length: 108
effective length of query: 288
effective length of database: 23,829,512
effective search space: 6862899456
effective search space used: 6862899456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)