ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3276    suspect: LH   R     KOG1674  General function prediction only                               Cyclin

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3276 1134308  1134967 220  
         (220 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR071w [R] KOG1674 Cyclin                                            122   4e-28
SPAC19E9.03 [R] KOG1674 Cyclin                                         60   3e-09

>YHR071w [R] KOG1674 Cyclin
          Length = 229

 Score =  122 bits (306), Expect = 4e-28
 Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 3/139 (2%)

Query: 37  VATLLSALTSNFSNQRINNSKQLILHFINEVVKRSKSSQLVVIQATYLFHQIY-TKALKP 95
           ++  LS ++   SN +INNS   IL F+NEV+KRSK S+   + AT+ F +I+ ++ ++ 
Sbjct: 57  ISNFLSEISRPLSNGKINNSTHNILKFLNEVLKRSKCSKENAVLATFYFQKIHQSRGVRD 116

Query: 96  VSITDMPEFARCSKRVFLSCLILAHKFSNDSTFSMKTWCLISGLKPRDLANMERWTLSTL 155
            S   +PEF+ CS+R+FL CLIL+HKF ND+T+SMK W +ISGL  +DL+ MERW L  L
Sbjct: 117 ES--SLPEFSHCSRRIFLCCLILSHKFLNDNTYSMKNWQIISGLHAKDLSLMERWCLGKL 174

Query: 156 DYKLRIESSVLNKWYNTVL 174
           +Y+L I       W    L
Sbjct: 175 NYELAIPYDEFLLWETNTL 193


>SPAC19E9.03 [R] KOG1674 Cyclin
          Length = 166

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 34/122 (27%), Positives = 60/122 (48%), Gaps = 5/122 (4%)

Query: 49  SNQRINNSKQLILHFINEVVKRSKSSQLVVIQATYLFHQIYTKAL-KPVSITDMPEFARC 107
           +NQ+ ++    +  F+ E ++RS+     ++ A Y F +    A  KP +   +     C
Sbjct: 27  TNQQSHSHSLSLTQFLYETIRRSRVDYTTLLLALYYFIRFRDAASSKPTNYIPL----LC 82

Query: 108 SKRVFLSCLILAHKFSNDSTFSMKTWCLISGLKPRDLANMERWTLSTLDYKLRIESSVLN 167
            +R+FL CL+ A KF  D +FS + W  +SGL    L  +E      +DY+L +   +  
Sbjct: 83  GRRLFLVCLMAATKFLQDRSFSNRAWSRLSGLPVDKLLVLEYMFYQCIDYRLVVPKHIFA 142

Query: 168 KW 169
           +W
Sbjct: 143 RW 144


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,363,365
Number of Sequences: 60738
Number of extensions: 384733
Number of successful extensions: 966
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 30,389,216
effective HSP length: 102
effective length of query: 118
effective length of database: 24,193,940
effective search space: 2854884920
effective search space used: 2854884920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)