ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3293    suspect: LH   S     KOG4503  Function unknown                                               Uncharacterized conserved membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3293 1139990  1140370 127  
         (127 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL247w [S] KOG4503 Uncharacterized conserved membrane protein         59   8e-10
YHR036w [S] KOG4503 Uncharacterized conserved membrane protein         46   7e-06

>YGL247w [S] KOG4503 Uncharacterized conserved membrane protein
          Length = 197

 Score = 59.3 bits (142), Expect = 8e-10
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 20  FCWTVHKDVQWQLLEQQWVDMKKISQCKRSYVENRCSEGIR-PALAGKCDEWWHCAQLDS 78
           F   +  DV  +L      ++ KI+ CK  Y EN+C   +R PAL  +C+EW  C   + 
Sbjct: 70  FILMIRNDVNLKLEHNVREELDKIATCKSRYFENQCEPHMRVPALEVRCNEWSKCMNKEI 129

Query: 79  -HPSVHQMANLYAKTLAHTLNSFIQALAFKTIIVLMLFVL 117
              S +Q A  +A+TLA  +N+F +A + ++ + +++ ++
Sbjct: 130 VSGSDYQWAKAWARTLAEVINAFFEAFSIRSFLFILISII 169


>YHR036w [S] KOG4503 Uncharacterized conserved membrane protein
          Length = 471

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 3/83 (3%)

Query: 46  CKRSYVENRCSE--GIRPALAGKCDEWWHCAQLDSHPSVHQMANLYAKTLAHTLNSFIQA 103
           C+  Y+ NRC++  G+ PAL  +C  W  C   ++       + L AK     +NSFI  
Sbjct: 343 CQEQYLTNRCNQTPGL-PALGEQCAIWKQCMDRNNDIFFRARSTLSAKLFGDIINSFIDP 401

Query: 104 LAFKTIIVLMLFVLLISISSKLL 126
           L +KT+ V+   V+    SS  L
Sbjct: 402 LNWKTLFVIFCGVITWCFSSNFL 424


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.327    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,901
Number of Sequences: 60738
Number of extensions: 274980
Number of successful extensions: 908
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 2
length of query: 127
length of database: 30,389,216
effective HSP length: 103
effective length of query: 24
effective length of database: 24,133,202
effective search space: 579196848
effective search space used: 579196848
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)