ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3337 suspect: HSP Y KOG2992 Nuclear structure Nucleolar GTPase/ATPase p130
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3337 1157346 1158449 368
(368 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKR092c [Y] KOG2992 Nucleolar GTPase/ATPase p130 157 2e-38
7296502 [Y] KOG2992 Nucleolar GTPase/ATPase p130 67 5e-11
Hs4758860_3 [Y] KOG2992 Nucleolar GTPase/ATPase p130 67 5e-11
CE08376 [Y] KOG2992 Nucleolar GTPase/ATPase p130 64 4e-10
At5g57120 [Y] KOG2992 Nucleolar GTPase/ATPase p130 60 4e-09
SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130 54 5e-07
>YKR092c [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 406
Score = 157 bits (397), Expect = 2e-38
Identities = 82/124 (66%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 245 ETAVETETNSKRPLETESDSTENSKESSQEPSTKKQMISAGVDEVLPGQRKHFSRVEREK 304
ET T SK ET + S E++ +S S K I AG DE+ GQRKHFSRV+R K
Sbjct: 284 ETKEATADESKAE-ETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSK 342
Query: 305 IAFEHEVLTDNTYKGAAGTWGEMANDKLSRVRGKDFTKNKNKMKRGSYRGGSITMASGSY 364
I FE LTDNTYKGAAGTWGE AN+KL RVRGKDFTKNKNKMKRGSYRGGSIT+ SGSY
Sbjct: 343 INFEAWELTDNTYKGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSY 402
Query: 365 KFTD 368
KF D
Sbjct: 403 KFQD 406
>7296502 [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 654
Score = 66.6 bits (161), Expect = 5e-11
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 292 GQRKHFSRVEREKIAFEHEV--LTDNTYKGAAGTWGEMANDKLSRVRGKDFTKNKNKMKR 349
G+R F RV E + + V ++ K AAG+WGE AN L RGK F K K KR
Sbjct: 577 GRRSPFRRVRTEDVVVDSRVQDMSFEAKKNAAGSWGERANKDLKHTRGKSFKHEKTKKKR 636
Query: 350 GSYRGGSITMASGSYKF 366
GSYRGG I + S KF
Sbjct: 637 GSYRGGQIDVGVNSIKF 653
>Hs4758860_3 [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 142
Score = 66.6 bits (161), Expect = 5e-11
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 249 ETETNSKRPLETESDSTENSKES-----SQEPSTKKQMISAGVDEVLPGQRKH------- 296
E E + ++S S + K++ ++ P KK I P ++K
Sbjct: 10 EEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKK--IKLQTPNTFPKRKKGEKRASSP 67
Query: 297 FSRVEREKIAFEHEVLTDNTY---KGAAGTWGEMANDKLSRVRGKDFTKNKNKMKRGSYR 353
F RV E+I + V DN++ +GAAG WGE AN L +GK F K K KRGSYR
Sbjct: 68 FRRVREEEIEVDSRV-ADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 126
Query: 354 GGSITMASGSYKF 366
GGSI++ S KF
Sbjct: 127 GGSISVQVNSIKF 139
>CE08376 [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 971
Score = 63.9 bits (154), Expect = 4e-10
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 256 RPLETESD-STENSKESSQEPSTKKQMISAGVDEVLPGQRKH----FSRVEREKIAFEHE 310
RP +S+ S E + SS+ P+ K + ++ ++ + RK F RV+ K + E
Sbjct: 852 RPQRADSEESAETEESSSRTPALKAKPLATSTEKAVYENRKRKSSPFRRVQMTKDSVS-E 910
Query: 311 VLTDNTYKGAAGTWGEMANDKLSRVRGKDFTKNKNKMKRGSYRGGSITMASGSYKFTD 368
+N + WG+ AN+ L +V GK F K K K+GSY GG I + S KF+D
Sbjct: 911 KFRNNQHDSHFDQWGQRANESLGKVVGKAFRHEKTKKKKGSYGGGPINQSINSIKFSD 968
>At5g57120 [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 330
Score = 60.5 bits (145), Expect = 4e-09
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 245 ETAVETETNSKRPLETESDSTENSKESSQEPSTKKQMISAGVDEVLPGQRKHFSRVEREK 304
E VE + + E+++ EN E + Q G+ +K F RV ++
Sbjct: 203 ENVVENDEGVQETPVKETETKENGNAEKSETKSTNQKSGKGLSNSKE-PKKPFQRVNVDE 261
Query: 305 IAFEHEVLTDNTYKGAAGTWGEMANDKLSRVRGKDFTKNKNKMKRGSYRGGSITMASGSY 364
I + + + GA +G A + L +VRG+DF K K KRGSYRGG I S S
Sbjct: 262 IVYTENSNSYYSKGGAEIGYGLKAQEVLGQVRGRDFRHEKTKKKRGSYRGGLIDQESHST 321
Query: 365 KFTD 368
KF +
Sbjct: 322 KFNN 325
>SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130
Length = 451
Score = 53.5 bits (127), Expect = 5e-07
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 250 TETNSKRPLETESDSTENSKESSQEPSTKKQMISAGVDEVLPGQRKH------------- 296
+ T++ E + S+ NS S + S K + S D+ L +RKH
Sbjct: 319 SNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSL--KRKHEDDESSTSTKSSR 376
Query: 297 -----FSRV-EREKIAFEHEVLTDNTYKGAAGTWGEMANDKLSRVRGKDFTKNKNKMKRG 350
F+RV + + F L DN++ +G +AN L RGK F + KNK KRG
Sbjct: 377 TTKTPFTRVGDPSQWDFASPALRDNSFN-FEDDYGTLANRDLIVTRGKGFRQEKNKKKRG 435
Query: 351 SYRGGSITMASGSYKF 366
SYRGG I S+KF
Sbjct: 436 SYRGGRINTEVRSFKF 451
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.304 0.121 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,441,168
Number of Sequences: 60738
Number of extensions: 272124
Number of successful extensions: 982
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 7
length of query: 368
length of database: 30,389,216
effective HSP length: 108
effective length of query: 260
effective length of database: 23,829,512
effective search space: 6195673120
effective search space used: 6195673120
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)