ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3352 good TZ KOG1703 Cytoskeleton Adaptor protein Enigma and related PDZ-LIM proteins r_klactV3352 good TZ KOG1703 Signal transduction mechanisms Adaptor protein Enigma and related PDZ-LIM proteins

Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3352 1164599 1162725 -625 
         (625 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   
Score E Sequences producing significant alignments: (bits) Value YKR090w [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM ... 236 6e-62 Hs7662330 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limat... 71 6e-12 Hs4506345 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LI... 66 1e-10 Hs5453714 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LI... 65 2e-10 CE28335 [K] KOG4577 Transcription factor LIM3 contains LIM and H... 65 2e-10 7290973 [R] KOG0490 Transcription factor contains HOX domain 65 2e-10 Hs4758670 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LI... 62 2e-09 7299033 [TZ] KOG2272 Focal adhesion protein PINCH-1 contains LIM... 62 2e-09 Hs22044051 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Lima... 62 3e-09 HsM5921986 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Lima... 61 4e-09 HsM4504999 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Lima... 61 4e-09 Hs21284385 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Lima... 61 4e-09 Hs21284383 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Lima... 61 4e-09 Hs21361591 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-L... 59 2e-08 CE04392 [TZ] KOG2272 Focal adhesion protein PINCH-1 contains LIM... 59 2e-08 CE01828 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM ... 58 4e-08 Hs14755347 [R] KOG0490 Transcription factor contains HOX domain 58 5e-08 CE15150 [R] KOG0490 Transcription factor contains HOX domain 57 6e-08 Hs7657303 [K] KOG4577 Transcription factor LIM3 contains LIM and... 57 1e-07 Hs22055163 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-L... 57 1e-07 7299231 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin... 56 1e-07 7298500 [R] KOG0490 Transcription factor contains HOX domain 56 1e-07 Hs11641283 [R] KOG0490 Transcription factor contains HOX domain 56 2e-07 7298537 [K] KOG4577 Transcription factor LIM3 contains LIM and H... 55 4e-07 Hs4504737 [R] KOG0490 Transcription factor contains HOX domain 54 5e-07 Hs15375314 [K] KOG4577 Transcription factor LIM3 contains LIM an... 54 5e-07 7291703 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM ... 54 7e-07 HsM4503721 [TZR] KOG1704 FOG: LIM domain 54 9e-07 Hs21361122 [TZR] KOG1704 FOG: LIM domain 54 9e-07 SPBC4F6.12 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-L... 53 1e-06 HsM7706250 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-L... 53 1e-06 CE27107 [R] KOG0490 Transcription factor contains HOX domain 52 2e-06 CE23977 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM ... 52 3e-06 CE17366 [R] KOG0490 Transcription factor contains HOX domain 52 3e-06 CE03650 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM ... 52 3e-06 Hs11496885 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-L... 51 6e-06 Hs20539165 [T] KOG1701 Focal adhesion adaptor protein Paxillin a... 50 8e-06 >YKR090w [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 706 Score = 236 bits (603), Expect = 6e-62 Identities = 170/528 (32%), Positives = 235/528 (44%), Gaps = 116/528 (21%) Query: 180 QSNSSSTYNTPQMGDSGEQFPPGIDPVEQSFMQLTEN---SSVKRDSQDDGDNLRDS--- 233 Q+ + +N Q + + P+E+SFM LT+N S V +Q D + D Sbjct: 169 QAADNFPFNFEQEDAGNTEREQDLSPIERSFMMLTQNDTASVVNSMNQTDNRGVLDQKLG 228 Query: 234 -----------YHSSVDDADVSNHISVNFAPNSALSKALLHDEPEPALIPNILVSETSDV 282 Y S D ++ S+NF P+ L L E EP L + ++ + Sbjct: 229 KEQQKEESSIEYESEGQQEDENDIESLNFEPDPKLQMNL---ENEP-LQDDFPEAKQEEK 284 Query: 283 HDLPPVPVVSIQAXXXXXXXXXXXXXXXXXINPLYPNNDLKQIEQIPSVVVEPEIVSKSA 342 + P +P +++ + +YP+++ +E P + S S Sbjct: 285 NTEPKIPEINVTRESNTPSLTMNALD-----SKIYPDDNFSGLESSKEQK-SPGVSSSST 338 Query: 343 EPELNSPDG------KLTA--------------MEKLIAELDTVTLTRNKGLTPDQELSL 382 + E S DG +T+ +E+LIA+LD V+L+RN L + Sbjct: 339 KVEDLSLDGLNEKRLSITSSENVETPYTATNLQVEQLIAQLDDVSLSRNAKLDMNGNCLN 398 Query: 383 ELGTKQTHLKKSSAYLSHYEPQMINIPEMQRP----------------------DEEGTL 420 + K + KKSSAYLS Y P M +IP Q+ DE+ Sbjct: 399 AVDRKASRFKKSSAYLSGY-PSM-DIPVTQQTSIVQNSNTNLSRQTILVDKGDVDEDAPS 456 Query: 421 MSLQSNSTPTFYNFHKESHEPIQTP----PEKIRDSLPRQQELH---------------- 460 S + TP FY F + + E E R LP + L Sbjct: 457 ESTTNGGTPIFYKFKQSNVEYSNNEGMGSQETFRTKLPTIEALQLQHKRNITDLREEIDN 516 Query: 461 ------------------------EQTPMEV-YPPGHGPCRNCHKEVVGKGIYSKHENEL 495 E P+E YPPG GPCR C EV GK ++SK ENEL Sbjct: 517 SKSNDSHVLPNGGTTRYSSDADYKETEPIEFKYPPGEGPCRACGLEVTGKRMFSKKENEL 576 Query: 496 SGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGECLEND 555 SGQWHR CFKCI C F+K VPCYIL D+PYCQ H+HE+N+SICKVC+ FIEGECLEND Sbjct: 577 SGQWHRECFKCIECGIKFNKHVPCYILGDEPYCQKHYHEENHSICKVCSNFIEGECLEND 636 Query: 556 KNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNRHDINTLKETGVSS 603 K ERFH CL C++C I DYY+FN E +C HD+ L + G+ + Sbjct: 637 KVERFHVDCLNCFLCKTAITNDYYIFNGEIPLCGNHDMEALLKEGIDN 684 >Hs7662330 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 683 Score = 70.9 bits (172), Expect = 6e-12 Identities = 43/140 (30%), Positives = 69/140 (48%), Gaps = 17/140 (12%) Query: 457 QELHEQTPMEVYPPGHGPCRNCHKEVV-GKGIYSKHENELSGQWHRGCFKCITCSKPFSK 515 Q + P+++ P H C C +E+ G+ + + L QWH CFKC TCS + Sbjct: 135 QSMASSKPIKIRGPSH--CAGCKEEIKHGQSLLA-----LDKQWHVSCFKCQTCSVILTG 187 Query: 516 RVPCYI-LDDQPYCQLHFHEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVI 574 YI D PYC+ +H + C+ C+ +I G LE + +HP+C +C C ++ Sbjct: 188 E---YISKDGVPYCESDYHAQFGIKCETCDRYISGRVLEAG-GKHYHPTCARCVRCHQMF 243 Query: 575 --GQDYYVFNHE--HTICNR 590 G++ Y+ E H IC + Sbjct: 244 TEGEEMYLTGSEVWHPICKQ 263 >Hs4506345 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 557 Score = 66.2 bits (160), Expect = 1e-10 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 10/123 (8%) Query: 466 EVYPPGHGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQ 525 +++ P G C + I + + L+ WH CF C C PF + D Q Sbjct: 436 DMFAPKCGGC--------ARAILENYISALNTLWHPECFVCRECFTPFVNG-SFFEHDGQ 486 Query: 526 PYCQLHFHEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEH 585 PYC++H+HE+ S+C C I G C+ ++FHP C C K + + + ++ Sbjct: 487 PYCEVHYHERRGSLCSGCQKPITGRCI-TAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDK 545 Query: 586 TIC 588 C Sbjct: 546 PYC 548 >Hs5453714 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 596 Score = 65.5 bits (158), Expect = 2e-10 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C ++++G+ I N L WH CF C+ C KP V ++ D +PYC+ ++ Sbjct: 479 CGRCQRKILGEVI-----NALKQTWHVSCFVCVACGKPIRNNV-FHLEDGEPYCETDYYA 532 Query: 535 KNNSICKVCNGFIE-GECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNRH 591 +IC C IE G+ +H +C C +C + + + + +C +H Sbjct: 533 LFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKKH 590 >CE28335 [K] KOG4577 Transcription factor LIM3 contains LIM and HOX domains Length = 351 Score = 65.5 bits (158), Expect = 2e-10 Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 485 KGIYSKHENELSGQ-WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVC 543 K I + ++++G+ +H C +C TC C++ +D YC+ HF++K + C C Sbjct: 53 KKIRDRFVSKVNGRCYHSSCLRCSTCKDELG--ATCFLREDSMYCRAHFYKKFGTKCSSC 110 Query: 544 N-GFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYVFNHEHTICNRHDINTLKETG 600 N G + + N +H C +C+IC + + G+++Y+ + + + D ++ Sbjct: 111 NEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQARDKH 170 Query: 601 VSSLPAD 607 + L D Sbjct: 171 CNELEGD 177 >7290973 [R] KOG0490 Transcription factor contains HOX domain Length = 505 Score = 65.5 bits (158), Expect = 2e-10 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 469 PPGHG-PCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPY 527 P G G PC C+K ++ K + N L WH C +C C +P + + C+ + + Y Sbjct: 20 PVGVGDPCAGCNKPILDKFLL----NVLERAWHASCVRCCECLQPLTDK--CFSRESKLY 73 Query: 528 CQLHFHEKNNSICKVCN-GFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYVFNHE 584 C+ F + + C C G + + +++ FH +C C IC K + G+ YV + Sbjct: 74 CRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDN 133 Query: 585 HTIC 588 IC Sbjct: 134 KFIC 137 >Hs4758670 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 386 Score = 62.4 bits (150), Expect = 2e-09 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 13/117 (11%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQ---WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLH 531 C C++ V+ EN LS WH CF C C FS + LD +P+C+LH Sbjct: 270 CGGCNRPVL--------ENYLSAMDTVWHPECFVCGDCFTSFSTG-SFFELDGRPFCELH 320 Query: 532 FHEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 +H + ++C C I G C+ + +FHP C C + + + ++ T C Sbjct: 321 YHHRRGTLCHGCGQPITGRCI-SAMGYKFHPEHFVCAFCLTQLSKGIFREQNDKTYC 376 >7299033 [TZ] KOG2272 Focal adhesion protein PINCH-1 contains LIM domains Length = 335 Score = 62.4 bits (150), Expect = 2e-09 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 4/96 (4%) Query: 499 WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGECLENDKNE 558 WH CF C C +PF + Y + + YC+ FH C C F+ G ++ + Sbjct: 29 WHTQCFVCAQCFRPFQDGI-FYEFEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKA-MSA 86 Query: 559 RFHPSCLKCYICAKVIGQDYYVFNHEHTICNRHDIN 594 +HP C +C +CAK + ++ N +C H+ N Sbjct: 87 SWHPQCFRCQLCAKELADCGFIKNQNRALC--HECN 120 >Hs22044051 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 443 Score = 61.6 bits (148), Expect = 3e-09 Identities = 41/118 (34%), Positives = 55/118 (45%), Gaps = 15/118 (12%) Query: 495 LSGQWHRGCFKCITCSKPFSKRVPCYI-LDDQPYCQLHFHEKNNSICKVCNGFIEGECLE 553 L WH GCFKC +C K + YI D PYC+ +H K C C +I G LE Sbjct: 40 LDKHWHLGCFKCKSCGKLLNAE---YISKDGLPYCEADYHAKFGIRCDSCEKYITGRVLE 96 Query: 554 NDKNERFHPSCLKCYICAKVI--GQDYYVFNHE--HTICNR----HDINTLKETGVSS 603 + + +HPSC C C ++ G++ Y+ H C + D N KET SS Sbjct: 97 AGE-KHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRN--KETRTSS 151 >HsM5921986 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 626 Score = 61.2 bits (147), Expect = 4e-09 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 13/110 (11%) Query: 475 CRNCHKEVV-GKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYI-LDDQPYCQLHF 532 C C +++ G+ + + L QWH GCFKC +C K + YI D PYC+ + Sbjct: 74 CAGCGRDIKNGQALLA-----LDKQWHLGCFKCKSCGKVLTGE---YISKDGAPYCEKDY 125 Query: 533 HEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYV 580 C+ C+ FI G+ LE ++ +HPSC +C C ++ G++ Y+ Sbjct: 126 QGLFGVKCEACHQFITGKVLEAG-DKHYHPSCARCSRCNQMFTEGEEMYL 174 >HsM4504999 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 778 Score = 61.2 bits (147), Expect = 4e-09 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 13/110 (11%) Query: 475 CRNCHKEVV-GKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYI-LDDQPYCQLHF 532 C C +++ G+ + + L QWH GCFKC +C K + YI D PYC+ + Sbjct: 226 CAGCGRDIKNGQALLA-----LDKQWHLGCFKCKSCGKVLTGE---YISKDGAPYCEKDY 277 Query: 533 HEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYV 580 C+ C+ FI G+ LE ++ +HPSC +C C ++ G++ Y+ Sbjct: 278 QGLFGVKCEACHQFITGKVLEAG-DKHYHPSCARCSRCNQMFTEGEEMYL 326 >Hs21284385 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 626 Score = 61.2 bits (147), Expect = 4e-09 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 13/110 (11%) Query: 475 CRNCHKEVV-GKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYI-LDDQPYCQLHF 532 C C +++ G+ + + L QWH GCFKC +C K + YI D PYC+ + Sbjct: 74 CAGCGRDIKNGQALLA-----LDKQWHLGCFKCKSCGKVLTGE---YISKDGAPYCEKDY 125 Query: 533 HEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYV 580 C+ C+ FI G+ LE ++ +HPSC +C C ++ G++ Y+ Sbjct: 126 QGLFGVKCEACHQFITGKVLEAG-DKHYHPSCARCSRCNQMFTEGEEMYL 174 >Hs21284383 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 778 Score = 61.2 bits (147), Expect = 4e-09 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 13/110 (11%) Query: 475 CRNCHKEVV-GKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDD-QPYCQLHF 532 C C +++ G+ + + L QWH GCFKC +C K + YI D PYC+ + Sbjct: 226 CAGCGRDIKNGQALLA-----LDKQWHLGCFKCKSCGKVLTGE---YISKDGAPYCEKDY 277 Query: 533 HEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYV 580 C+ C+ FI G+ LE ++ +HPSC +C C ++ G++ Y+ Sbjct: 278 QGLFGVKCEACHQFITGKVLEAG-DKHYHPSCARCSRCNQMFTEGEEMYL 326 >Hs21361591 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 444 Score = 58.9 bits (141), Expect = 2e-08 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C+ C ++ I + LS WH CF C C PFS + + +P C+ HFH Sbjct: 329 CQGCQGPILDNYI-----SALSALWHPDCFVCRECFAPFSGG-SFFEHEGRPLCENHFHA 382 Query: 535 KNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAK 572 + S+C C + G C+ + RFHP C C + Sbjct: 383 RRGSLCATCGLPVTGRCV-SALGRRFHPDHFTCTFCLR 419 >CE04392 [TZ] KOG2272 Focal adhesion protein PINCH-1 contains LIM domains Length = 348 Score = 58.9 bits (141), Expect = 2e-08 Identities = 31/94 (32%), Positives = 45/94 (46%), Gaps = 3/94 (3%) Query: 496 SGQ-WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGECLEN 554 SGQ WH CF C C +PF + + + + YC+ FH + C CN FI G ++ Sbjct: 38 SGQVWHSECFVCAQCFEPFPDGI-YFEYEGRKYCEHDFHVLFSPCCGKCNEFIVGRVIK- 95 Query: 555 DKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 N +HP C C IC K + ++ N +C Sbjct: 96 AMNASWHPGCFCCEICNKQLADVGFLRNAGRALC 129 >CE01828 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 256 Score = 58.2 bits (139), Expect = 4e-08 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 7/96 (7%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C + + I + L WH CF C C F+ + + P C+ H+HE Sbjct: 137 CNGCSQPITSNFITA-----LGTHWHPDCFVCQHCGVSFNG-ASFFEHNGAPLCERHYHE 190 Query: 535 KNNSICKVCNGFIEGECLENDKNERFHPSCLKCYIC 570 SIC C G I G C+ +FHP +C C Sbjct: 191 SRGSICSQCRGAINGRCVA-AMGRKFHPEHFRCSYC 225 Score = 55.8 bits (133), Expect = 2e-07 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 473 GPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHF 532 G C C K ++G+ + + L WH + C C +R P + + + +C+ + Sbjct: 17 GDCAACGKPIIGQVVIA-----LGKMWHPEHYTCCECGAELGQR-PFFERNGRAFCEEDY 70 Query: 533 HEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNR 590 H + + C+ C+ I C+ + N+ FH C C C + G+D + + T C R Sbjct: 71 HNQFSPKCQGCHRAITDRCV-SVMNKNFHIECFTCAECNQPFGEDGFHEKNGQTYCKR 127 >Hs14755347 [R] KOG0490 Transcription factor contains HOX domain Length = 359 Score = 57.8 bits (138), Expect = 5e-08 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 470 PGHGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQ 529 PG C C ++ + I + +WH C KC CS+ + C++ D + YC+ Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDL---EWHAACLKCAECSQYLDETCTCFVRDGKTYCK 78 Query: 530 LHFHEKNNSICKVCN-GFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYVFNHEHT 586 + C C GF + + ++ +H C +C +C++ + G ++ + EH Sbjct: 79 RDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSL--REHE 136 Query: 587 ICNRHDINTLKETGVSSLP 605 + R D L E + P Sbjct: 137 LLCRADHGLLLERAAAGSP 155 >CE15150 [R] KOG0490 Transcription factor contains HOX domain Length = 405 Score = 57.4 bits (137), Expect = 6e-08 Identities = 31/128 (24%), Positives = 59/128 (45%), Gaps = 10/128 (7%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C + ++ + +++ L WH+ C +C C P S + C+ D C+ F Sbjct: 68 CAACAQPILDRYVFTV----LGKCWHQSCLRCCDCRAPMS--MTCFSRDGLILCKTDFSR 121 Query: 535 KNNSICKVCNGFIEGECL-ENDKNERFHPSCLKCYICAKVI--GQDYYVFNHEHTICNRH 591 + + C C+G +E E L +++ FH C +C +C +++ G Y+ +C + Sbjct: 122 RYSQRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVC-QS 180 Query: 592 DINTLKET 599 D T +T Sbjct: 181 DFQTATKT 188 >Hs7657303 [K] KOG4577 Transcription factor LIM3 contains LIM and HOX domains Length = 402 Score = 56.6 bits (135), Expect = 1e-07 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 19/149 (12%) Query: 453 LPRQQELHEQTPMEVYPPGHGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKP 512 L R+ +L + P+ C C + ++ + I L WH C KC C P Sbjct: 23 LARRADLRREIPL---------CAGCDQHILDRFILKA----LDRHWHSKCLKCSDCHTP 69 Query: 513 FSKRVPCYILDDQPYCQLHFHEKNNSICKVCN-GFIEGECLENDKNERFHPSCLKCYICA 571 ++R C+ + YC+ F ++ + C C G + + ++ +H C C +C Sbjct: 70 LAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 127 Query: 572 KVI--GQDYYVFNHEHTICNRHDINTLKE 598 + + G ++Y+ +C + D T K+ Sbjct: 128 RQLATGDEFYLMEDSRLVC-KADYETAKQ 155 >Hs22055163 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 727 Score = 56.6 bits (135), Expect = 1e-07 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C+ +++G+ +++ + WH CF C C KPF + ++ D +PYC+ + Sbjct: 610 CAKCNTKIMGEVMHALRQT-----WHTTCFVCAACKKPFGNSL-FHMEDGEPYCEKDYIN 663 Query: 535 KNNSICKVCNGFIE-GECLENDKNERFHPSCLKCYIC-AKVIGQDYYVFNHEHTICNRH 591 ++ C C+ +E G+ +H +C C +C + GQ +Y + +C +H Sbjct: 664 LFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFY-SKKDRPLCKKH 721 >7299231 [TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance Length = 765 Score = 56.2 bits (134), Expect = 1e-07 Identities = 27/82 (32%), Positives = 38/82 (45%), Gaps = 4/82 (4%) Query: 495 LSGQWHRGCFKCITCSKPFSKRVPCYILDDQ-PYCQLHFHEKNNSICKVCNGFIEGECLE 553 L QWH CF+C C + Y+ D PYC+ + + C C+ FI G+ L+ Sbjct: 208 LDRQWHVSCFRCKACQAVLNGE---YMGKDAVPYCEKCYQKGFGVKCAYCSRFISGKVLQ 264 Query: 554 NDKNERFHPSCLKCYICAKVIG 575 N FHP+C +C C G Sbjct: 265 AGDNHHFHPTCARCTKCGDPFG 286 >7298500 [R] KOG0490 Transcription factor contains HOX domain Length = 534 Score = 56.2 bits (134), Expect = 1e-07 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 498 QWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVC-NGFIEGECLENDK 556 +WH C KC C + + C++ D + YC+ + + C C N F + + + K Sbjct: 74 EWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAK 133 Query: 557 NERFHPSCLKCYICAK-VIGQDYYVFNHEHTICNRHDINTLKETGVSSL 604 + FH C +C CA+ ++ D + + + D + L+++ SSL Sbjct: 134 TKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEKSSQSSL 182 >Hs11641283 [R] KOG0490 Transcription factor contains HOX domain Length = 402 Score = 55.8 bits (133), Expect = 2e-07 Identities = 31/135 (22%), Positives = 63/135 (45%), Gaps = 11/135 (8%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C + ++ + + N L WH C +C C S++ C+ + + YC+ F Sbjct: 5 CAGCERPILDRFLL----NVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFR 58 Query: 535 KNNSICKVC-NGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYVFNHEHTICNRH 591 + + C C G + + +++ FH +C C +C K + G++ YV + +C Sbjct: 59 RFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDD 118 Query: 592 DI--NTLKETGVSSL 604 + ++LKE ++S+ Sbjct: 119 YLSSSSLKEGSLNSV 133 >7298537 [K] KOG4577 Transcription factor LIM3 contains LIM and HOX domains Length = 440 Score = 54.7 bits (130), Expect = 4e-07 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C CH+ ++ + I E WH C +C C + + C+ + Q +C+ F + Sbjct: 42 CGGCHELILDRFILKVLERT----WHAKCLQCSECHGQLNDK--CFARNGQLFCKEDFFK 95 Query: 535 KNNSICKVCN-GFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYVFNHEHTICNRH 591 + + C C+ G + + ++ +H C C +C++ + G ++Y+ IC R Sbjct: 96 RYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKR- 154 Query: 592 DINTLKETGV---SSLPADQ 608 D K G+ SL DQ Sbjct: 155 DYEEAKAKGLYLDGSLDGDQ 174 >Hs4504737 [R] KOG0490 Transcription factor contains HOX domain Length = 346 Score = 54.3 bits (129), Expect = 5e-07 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Query: 498 QWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCN-GFIEGECLENDK 556 +WH C KC C++ + C++ D + YC+ + C C+ GF + + + + Sbjct: 34 EWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRAR 93 Query: 557 NERFHPSCLKCYICAK-VIGQDYYVFNHEHTICNR-HDI 593 ++ +H C +C C++ +I D + + C HD+ Sbjct: 94 SKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDV 132 >Hs15375314 [K] KOG4577 Transcription factor LIM3 contains LIM and HOX domains Length = 390 Score = 54.3 bits (129), Expect = 5e-07 Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 14/146 (9%) Query: 464 PMEVYPPGHGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILD 523 PM+ P C C++ ++ K I L WH C KC C + R C+ Sbjct: 23 PMQQIPQ----CAGCNQHILDKFILKV----LDRHWHSSCLKCADCQMQLADR--CFSRA 72 Query: 524 DQPYCQLHFHEKNNSICKVC-NGFIEGECLENDKNERFHPSCLKCYICAKVI--GQDYYV 580 YC+ F ++ + C C G + + ++ +H C C IC + + G ++Y+ Sbjct: 73 GSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYL 132 Query: 581 FNHEHTICNRHDINTLKETGVSSLPA 606 +C + D T K+ S A Sbjct: 133 MEDGRLVC-KEDYETAKQNDDSEAGA 157 >7291703 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 287 Score = 53.9 bits (128), Expect = 7e-07 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C ++ +G+ + +WH CF+C++CSK + ++ +C+ HF E Sbjct: 165 CSACRTPILERGVAAAER-----KWHEKCFRCVSCSKSLVS-ASFFEVNGYLFCKAHFRE 218 Query: 535 KNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 +S C C I+ + + ++H C KC+ C K I + + IC Sbjct: 219 LFSSRCAGCEKPIDRRAVV-ALSTKWHAKCFKCHHCRKRISAREFWIENGQPIC 271 >HsM4503721 [TZR] KOG1704 FOG: LIM domain Length = 280 Score = 53.5 bits (127), Expect = 9e-07 Identities = 33/118 (27%), Positives = 53/118 (43%), Gaps = 10/118 (8%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPY---CQLH 531 C C+K + GI + + WH CF C+TCSK + + ++DQ Y C + Sbjct: 162 CVKCNKAITSGGITYQDQ-----PWHADCFVCVTCSKKLAGQ-RFTAVEDQYYCVDCYKN 215 Query: 532 FHEKNNSICK-VCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 F K + CK GF +G + + + +H C C C+ + +VF+ E C Sbjct: 216 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 273 >Hs21361122 [TZR] KOG1704 FOG: LIM domain Length = 280 Score = 53.5 bits (127), Expect = 9e-07 Identities = 33/118 (27%), Positives = 53/118 (43%), Gaps = 10/118 (8%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPY---CQLH 531 C C+K + GI + + WH CF C+TCSK + + ++DQ Y C + Sbjct: 162 CVKCNKAITSGGITYQDQ-----PWHADCFVCVTCSKKLAGQ-RFTAVEDQYYCVDCYKN 215 Query: 532 FHEKNNSICK-VCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 F K + CK GF +G + + + +H C C C+ + +VF+ E C Sbjct: 216 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 273 >SPBC4F6.12 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 438 Score = 53.1 bits (126), Expect = 1e-06 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 22/165 (13%) Query: 425 SNSTPTFYNFHK---ESHEPIQTPPEKIRDSL------------PRQQELHEQTPMEVYP 469 SN P ++FH S P+ TP ++ +L P H T +Y Sbjct: 192 SNRRPALHSFHSAPANSLYPLPTPTSQLPSNLSSNNLFQSDSLKPSMVSSHTSTKPVLYR 251 Query: 470 PG-HGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYC 528 C +C + I S +L H CFKC TCS+ + V Y + + YC Sbjct: 252 GNSEKSCHSCGGSLRAGRIISASGKKL----HPQCFKCDTCSQNL-EHVGFYYREGKFYC 306 Query: 529 QLHFHEKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKV 573 L +HE+ + CK C IE + + + N+ FH + C C++V Sbjct: 307 HLDYHEQFSPRCKHCKTPIEDQAV-HINNDWFHENHHFCAGCSEV 350 Score = 52.8 bits (125), Expect = 2e-06 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 8/115 (6%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQW-HRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFH 533 C++C + + ++ ++ W H C CS+ F+ +PC DD +CQ + Sbjct: 318 CKHCKTPIEDQAVH------INNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYD 371 Query: 534 EKNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTIC 588 K CK C I G ++ E +H C C C ++G + Y IC Sbjct: 372 NKYAVKCKKCRKPILGISVKGSDGE-YHSQCWTCGACNALLGDEGYFMIENTPIC 425 >HsM7706250 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 444 Score = 53.1 bits (126), Expect = 1e-06 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C+ C ++ I + LS WH CF C C PFS + + +P C+ HFH Sbjct: 329 CQGCQGPILDNYI-----SALSLLWHPDCFVCRECFAPFSGG-SFFEHEGRPLCENHFHA 382 Query: 535 KNNSICKVCNGFIEGECLENDKNERFHPSCLKCYICAK 572 + S+ C + G C+ + RFHP C C + Sbjct: 383 RRGSLWPTCGLPVTGRCV-SALGRRFHPDHFACTFCLR 419 >CE27107 [R] KOG0490 Transcription factor contains HOX domain Length = 409 Score = 52.4 bits (124), Expect = 2e-06 Identities = 31/116 (26%), Positives = 50/116 (42%), Gaps = 8/116 (6%) Query: 499 WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGECLENDKNE 558 +H C +C C PF CY+ D C+ ++ C+ C + E + E Sbjct: 130 YHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAKRYQKCCRKCEIPLNREDMVMKAKE 189 Query: 559 R-FHPSCLKCYICA-KVIGQDYYVFNHE-HTICNRH-----DINTLKETGVSSLPA 606 FH +C C+IC K+ DYY + + H C+ H +E V+++PA Sbjct: 190 MIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLCEEAAVATVPA 245 >CE23977 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 1353 Score = 52.0 bits (123), Expect = 3e-06 Identities = 30/118 (25%), Positives = 45/118 (37%), Gaps = 7/118 (5%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C K ++ + N L +WH CF C C KPF Y+ PYC+ ++ Sbjct: 1241 CNKCSKPIISDCL-----NALQKKWHPTCFTCAHCQKPFGNSA-FYLEQGLPYCEQDWNA 1294 Query: 535 KNNSICKVCNGFIE-GECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNRH 591 + C C IE G+ FH +C C C + + + + C H Sbjct: 1295 LFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAKNGQPFCRLH 1352 >CE17366 [R] KOG0490 Transcription factor contains HOX domain Length = 452 Score = 52.0 bits (123), Expect = 3e-06 Identities = 32/134 (23%), Positives = 57/134 (41%), Gaps = 15/134 (11%) Query: 454 PRQQELHEQTPMEVYPPGHGPCRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPF 513 P +Q H Q PM V C C E+ + + N ++H C KC+ CS+P Sbjct: 43 PVEQRQH-QPPMAV-------CAGCRLEISDRYFLRVNPNL---EFHAQCLKCVQCSRPL 91 Query: 514 SKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGE--CLENDKNERFHPSCLKCYICA 571 + ++ + Q YC+ + + C C+G + + FH +C C C Sbjct: 92 DENQTAFVKNGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVACE 151 Query: 572 KVI--GQDYYVFNH 583 K + G+++ + N+ Sbjct: 152 KRLQTGEEFQIKNN 165 >CE03650 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 1424 Score = 52.0 bits (123), Expect = 3e-06 Identities = 30/118 (25%), Positives = 45/118 (37%), Gaps = 7/118 (5%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C K ++ + N L +WH CF C C KPF Y+ PYC+ ++ Sbjct: 1312 CNKCSKPIISDCL-----NALQKKWHPTCFTCAHCQKPFGNSA-FYLEQGLPYCEQDWNA 1365 Query: 535 KNNSICKVCNGFIE-GECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNRH 591 + C C IE G+ FH +C C C + + + + C H Sbjct: 1366 LFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAKNGQPFCRLH 1423 >Hs11496885 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins Length = 457 Score = 50.8 bits (120), Expect = 6e-06 Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 7/118 (5%) Query: 475 CRNCHKEVVGKGIYSKHENELSGQWHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHE 534 C C K++ G+ +++ L WH CF C C P R Y+ + PYC+ + + Sbjct: 341 CAKCKKKITGEIMHA-----LKMTWHVHCFTCAACKTPIRNRA-FYMEEGVPYCERDYEK 394 Query: 535 KNNSICKVCNGFIE-GECLENDKNERFHPSCLKCYICAKVIGQDYYVFNHEHTICNRH 591 + C C+ I+ G+ +H +C C IC + + + +C H Sbjct: 395 MFGTKCHGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDRPLCKSH 452 >Hs20539165 [T] KOG1701 Focal adhesion adaptor protein Paxillin and related LIM proteins Length = 373 Score = 50.4 bits (119), Expect = 8e-06 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 9/149 (6%) Query: 441 PIQTPPEKIRDSLPRQQELHEQTPMEVYPPGHGP--CRNCHKEVVGKGIYSKHENELSGQ 498 P + P + P ++EL P E G C CHK V + + + + Q Sbjct: 148 PAEGPSVQPGPLRPMEEEL-PPPPAEPVEKGASTDICAFCHKTVSPRELAVE---AMKRQ 203 Query: 499 WHRGCFKCITCSKPFSKRVPCYILDDQPYCQLHFHEKNNSICKVCNGFIEGECLENDKNE 558 +H CF C TC + + + Y D +P C+ + + C C + + + Sbjct: 204 YHAQCFTCRTCRRQLAGQ-SFYQKDGRPLCEPCYQDTLER-CGKCGEVVRDHIIRA-LGQ 260 Query: 559 RFHPSCLKCYICAKVIGQDYYVFNHEHTI 587 FHPSC C CA+ IG + + ++ + Sbjct: 261 AFHPSCFTCVTCARCIGDESFALGSQNEV 289 Database: KOG eukaryal database 04/03 Posted date: Apr 14, 2003 1:07 PM Number of letters in database: 30,389,216 Number of sequences in database: 60,738 Lambda K H 0.313 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,386,356 Number of Sequences: 60738 Number of extensions: 1601436 Number of successful extensions: 4648 Number of sequences better than 1.0e-05: 37 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 36 Number of HSP's that attempted gapping in prelim test: 4522 Number of HSP's gapped (non-prelim): 91 length of query: 625 length of database: 30,389,216 effective HSP length: 112 effective length of query: 513 effective length of database: 23,586,560 effective search space: 12099905280 effective search space used: 12099905280 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)