ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3372 check: MH L KOG0990 Replication, recombination and repair Replication factor C, subunit RFC5
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3372 1168489 1169475 329
(329 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL290w [L] KOG0990 Replication factor C subunit RFC5 508 e-144
Hs6677723 [L] KOG0990 Replication factor C subunit RFC5 321 8e-88
At1g77470 [L] KOG0990 Replication factor C subunit RFC5 309 4e-84
CE29044 [L] KOG0990 Replication factor C subunit RFC5 263 2e-70
7297692 [L] KOG0990 Replication factor C subunit RFC5 260 2e-69
Hs4506491 [L] KOG0989 Replication factor C subunit RFC4 222 5e-58
SPAC27E2.10c [L] KOG0990 Replication factor C subunit RFC5 222 7e-58
ECU02g0290 [L] KOG0990 Replication factor C subunit RFC5 208 1e-53
At1g63160 [L] KOG0991 Replication factor C subunit RFC2 204 1e-52
SPAC23D3.02 [L] KOG0989 Replication factor C subunit RFC4 203 3e-52
At1g21690 [L] KOG0989 Replication factor C subunit RFC4 202 4e-52
CE17139 [L] KOG0991 Replication factor C subunit RFC2 199 5e-51
Hs4506487 [L] KOG0991 Replication factor C subunit RFC2 194 1e-49
YOL094c [L] KOG0991 Replication factor C subunit RFC2 194 1e-49
YJR068w [L] KOG0989 Replication factor C subunit RFC4 194 2e-49
SPAC1687.03c [L] KOG0991 Replication factor C subunit RFC2 191 1e-48
7292439 [L] KOG0991 Replication factor C subunit RFC2 186 5e-47
SPAPJ698.01c [L] KOG0990 Replication factor C subunit RFC5 183 3e-46
ECU09g1330 [L] KOG0991 Replication factor C subunit RFC2 177 2e-44
CE01268 [L] KOG0989 Replication factor C subunit RFC4 175 7e-44
7293390 [L] KOG0989 Replication factor C subunit RFC4 170 2e-42
ECU02g0680 [L] KOG0989 Replication factor C subunit RFC4 134 2e-31
At5g27740 [DL] KOG2035 Replication factor C subunit RFC3 125 1e-28
Hs4506489 [DL] KOG2035 Replication factor C subunit RFC3 105 7e-23
CE05396 [DL] KOG2035 Replication factor C subunit RFC3 102 8e-22
ECU10g0780i [DL] KOG2035 Replication factor C subunit RFC3 98 1e-20
YBR087w [DL] KOG2035 Replication factor C subunit RFC3 97 3e-20
7297827 [DL] KOG2035 Replication factor C subunit RFC3 95 2e-19
SPBC83.14c [DL] KOG2035 Replication factor C subunit RFC3 90 5e-18
At1g14460 [L] KOG0989 Replication factor C subunit RFC4 85 2e-16
At4g24790 [L] KOG0989 Replication factor C subunit RFC4 82 8e-16
ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large ... 81 2e-15
SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (larg... 76 6e-14
At2g02480 [L] KOG0989 Replication factor C subunit RFC4 76 8e-14
At1g24290 [L] KOG2028 ATPase related to the helicase subunit of ... 74 3e-13
Hs15011931 [L] KOG1968 Replication factor C subunit RFC1 (large ... 72 8e-13
YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large sub... 71 2e-12
YNL218w [L] KOG2028 ATPase related to the helicase subunit of th... 70 3e-12
At5g45720 [L] KOG0989 Replication factor C subunit RFC4 69 7e-12
SPAC26H5.02c [L] KOG2028 ATPase related to the helicase subunit ... 67 3e-11
7296805 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 67 3e-11
Hs22058826 [L] KOG0990 Replication factor C subunit RFC5 65 1e-10
Hs18426902 [L] KOG2028 ATPase related to the helicase subunit of... 64 2e-10
Hs14777079 [DL] KOG1969 DNA replication checkpoint protein CHL12... 59 7e-09
Hs18426904 [L] KOG2028 ATPase related to the helicase subunit of... 56 6e-08
SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL1... 52 1e-06
YMR078c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18 51 2e-06
>YNL290w [L] KOG0990 Replication factor C subunit RFC5
Length = 340
Score = 508 bits (1309), Expect = e-144
Identities = 250/328 (76%), Positives = 286/328 (86%), Gaps = 1/328 (0%)
Query: 2 ERTSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVAL 61
+R+ ENLPW+EKYRPETLD+VYGQ V+ TVRKF+ EG+LPHLLFYGPPGTGKTSTIVAL
Sbjct: 7 KRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66
Query: 62 AREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAA 121
AREIYG NY NMVLELNASDDRGIDVVRNQIK+FASTRQIFSKGFKLIILDEADAMTNAA
Sbjct: 67 AREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA 126
Query: 122 QNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEH 181
QNALRR+IERYTKNTRFC+LANYAHKLTPALLSRCTRFRFQPL ++AIERRIANVLV E
Sbjct: 127 QNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEK 186
Query: 182 LKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLET 241
LKL P A AL+ LS+GDMRR LNVLQ+ +ATLDNPD +E+++D+IYEC GAP P DL+
Sbjct: 187 LKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKA 246
Query: 242 MLESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELK-PQTRIELLSRLSDI 300
+L+SIL+DDW T YT+NK+R KGLALID+IEGI +LE YEL+ +TR+ LL++L+DI
Sbjct: 247 VLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADI 306
Query: 301 EYSISRGGTDSIQTSATIGTIKQCMELE 328
EYSIS+GG D IQ SA IG IK E E
Sbjct: 307 EYSISKGGNDQIQGSAVIGAIKASFENE 334
>Hs6677723 [L] KOG0990 Replication factor C subunit RFC5
Length = 340
Score = 321 bits (823), Expect = 8e-88
Identities = 161/324 (49%), Positives = 227/324 (69%), Gaps = 6/324 (1%)
Query: 7 NLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIY 66
NLPW+EKYRP+TL+D+ Q++++T++KF++E RLPHLL YGPPGTGKTSTI+A A+++Y
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 67 -GSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNAL 125
+ +MVLELNASDDRGID++R I FASTR IF KGFKL+ILDEADAMT AQNAL
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNAL 138
Query: 126 RRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLD 185
RR+IE++T+NTRFC++ NY K+ PAL SRCTRFRF PL+ + + R+ +V+ +E + +
Sbjct: 139 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDIS 198
Query: 186 PQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLES 245
AL+ LSSGDMRRALN+LQ+ N +VTE+ +Y C G P D+ +L+
Sbjct: 199 EDGMKALVTLSSGDMRRALNILQST-----NMAFGKVTEETVYTCTGHPLKSDIANILDW 253
Query: 246 ILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSIS 305
+L D+TT + +++ KGLAL D++ I + + + RI LL++++DIEY +S
Sbjct: 254 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 313
Query: 306 RGGTDSIQTSATIGTIKQCMELEV 329
G + IQ S+ I + +L V
Sbjct: 314 VGTNEKIQLSSLIAAFQVTRDLIV 337
>At1g77470 [L] KOG0990 Replication factor C subunit RFC5
Length = 369
Score = 309 bits (791), Expect = 4e-84
Identities = 157/331 (47%), Positives = 231/331 (69%), Gaps = 7/331 (2%)
Query: 5 SENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALARE 64
S+ PW+EKYRP++LDDV +++++T+ + +E +LPHLL YGPPGTGKTSTI+A+AR+
Sbjct: 36 SKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARK 95
Query: 65 IYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG---FKLIILDEADAMTNAA 121
+YG YRNM+LELNASDDRGIDVVR QI++FAST Q FS G KL++LDEADAMT A
Sbjct: 96 LYGPKYRNMILELNASDDRGIDVVRQQIQDFAST-QSFSLGKSSVKLVLLDEADAMTKDA 154
Query: 122 QNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEH 181
Q ALRR+IE+YTK+TRF ++ N+ +K+ PAL SRCTRFRF PL + +R+ +V+ E
Sbjct: 155 QFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAER 214
Query: 182 LKLDPQAHAALLRLSSGDMRRALNVLQA---ARATLDNPDTEEVTEDLIYECIGAPHPRD 238
L + AAL+RLS+GDMR+ALN+LQ+ A + +++++TE+ +Y C G P P+D
Sbjct: 215 LVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKD 274
Query: 239 LETMLESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLS 298
+E + +L + V++I+ KGLA++D+++ I + + ++ R++L++ L+
Sbjct: 275 IEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLA 334
Query: 299 DIEYSISRGGTDSIQTSATIGTIKQCMELEV 329
DIEY +S G D +Q A I T + V
Sbjct: 335 DIEYRLSFGCNDKLQLGAIISTFTHARSIIV 365
>CE29044 [L] KOG0990 Replication factor C subunit RFC5
Length = 388
Score = 263 bits (673), Expect = 2e-70
Identities = 143/354 (40%), Positives = 208/354 (58%), Gaps = 35/354 (9%)
Query: 4 TSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAR 63
T+ NLPW+EKYRP LD++ + +V T+ KF+ LPHLLFYGPPGTGKT+T++A AR
Sbjct: 25 TASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAAR 84
Query: 64 EIYG-SNYRNMVLELNASDDRGIDVVRNQIKEFASTR--QIFSKG-------FKLIILDE 113
++Y + +MVLELNASD+RGIDVVRN I FA T+ Q FS FKL+ILDE
Sbjct: 85 QMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDE 144
Query: 114 ADAMTNAAQNALRR--------------------IIERYTKNTRFCILANYAHKLTPALL 153
ADAMT AQNALRR +IE+YT N RFCI+ NY + PA+
Sbjct: 145 ADAMTKDAQNALRRLDKTDYEQNIIIHNVNIYFRVIEKYTDNVRFCIICNYLASIVPAIQ 204
Query: 154 SRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARAT 213
SRCTRFRF PL ++ I R+ ++ E LK+ P ALL +S GDMR +N LQ+ +
Sbjct: 205 SRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMS 264
Query: 214 LDNPDTEEVTEDLIYECIGAPHPRDLETMLESILKDDWTTTTYTVNKIRITKGLALIDMI 273
D V+E+ +Y+CIG P P++++ +++++L D T+ G AL D+I
Sbjct: 265 FDT-----VSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVI 319
Query: 274 EGIAGLLEQYELKPQTRIELLSRLSDIEYSISRGGTDSIQTSATIGTIKQCMEL 327
+ + ++ + +++ L ++E ++S G ++ Q +A + + L
Sbjct: 320 THLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNETQLAAVVAAFFEAKRL 373
>7297692 [L] KOG0990 Replication factor C subunit RFC5
Length = 297
Score = 260 bits (665), Expect = 2e-69
Identities = 140/289 (48%), Positives = 190/289 (65%), Gaps = 7/289 (2%)
Query: 41 LPHLLFYGPPGTGKTSTIVALAREIYG-SNYRNMVLELNASDDRGIDVVRNQIKEFASTR 99
LPHLLFYGPPGTGKTSTI+A AR++Y +++MVLELNASDDRGI +VR QI FASTR
Sbjct: 9 LPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR 68
Query: 100 QIFSKGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRF 159
IF FKLIILDEADAMTN AQNALRRIIE+YT N RFC++ NY K+ PAL SRCTRF
Sbjct: 69 TIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRF 128
Query: 160 RFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDT 219
RF PLS+ + R+ ++ E +++ ALL L+ GDMR+ LNVLQ+ D
Sbjct: 129 RFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDT--- 185
Query: 220 EEVTEDLIYECIGAPHPRDLETMLESILKDDWTTTTY-TVNKIRITKGLALIDMIEGIAG 278
V ED +Y C+G P +D+E +L+++L ++ TV + +GLAL D+I +
Sbjct: 186 --VNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHL 243
Query: 279 LLEQYELKPQTRIELLSRLSDIEYSISRGGTDSIQTSATIGTIKQCMEL 327
+ + EL +L+ +L+ IE +++G T+ QT+A + C ++
Sbjct: 244 FVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRDM 292
>Hs4506491 [L] KOG0989 Replication factor C subunit RFC4
Length = 363
Score = 222 bits (566), Expect = 5e-58
Identities = 119/329 (36%), Positives = 202/329 (61%), Gaps = 12/329 (3%)
Query: 3 RTSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALA 62
+ ++ +PW+EKYRP+ +D+V Q+ VV ++K L LP+LLFYGPPGTGKTSTI+A A
Sbjct: 33 KKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 63 REIYGSN-YRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-------FKLIILDEA 114
RE++G +R VLELNASD+RGI VVR ++K FA S+ FK++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 115 DAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIA 174
D+MT+AAQ ALRR +E+ +K TRFC++ NY ++ L SRC++FRF+PLS++ ++R+
Sbjct: 153 DSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLL 212
Query: 175 NVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAP 234
++ KE++K+ + A L+++S GD+R+A+ LQ+A +E+TE +I + G
Sbjct: 213 DIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG---KEITEKVITDIAGVI 269
Query: 235 HPRDLETMLESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELL 294
++ + + + V + I +G A ++ + ++ + L + + +
Sbjct: 270 PAEKIDGVFAACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQKSIIT 328
Query: 295 SRLSDIEYSISRGGTDSIQTSATIGTIKQ 323
+L++++ ++ G + +Q + T+ Q
Sbjct: 329 EKLAEVDKCLADGADEHLQLISLCATVMQ 357
>SPAC27E2.10c [L] KOG0990 Replication factor C subunit RFC5
Length = 224
Score = 222 bits (565), Expect = 7e-58
Identities = 112/222 (50%), Positives = 156/222 (69%), Gaps = 5/222 (2%)
Query: 106 FKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLS 165
FK+IILDEADAMT AAQNALRR+IE+YTKN RFCI+ NY +K++PA+ SRCTRFRFQPL
Sbjct: 3 FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 62
Query: 166 EQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTED 225
+ IE+ + +V+ EH +DP A A+LRLS GDMR+ALN+LQA A D+ D
Sbjct: 63 PKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDV-----S 117
Query: 226 LIYECIGAPHPRDLETMLESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYEL 285
IY C+G PHP D++ L+SI+ D++ T++ I+ KGLAL D++ I L++ E+
Sbjct: 118 AIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEI 177
Query: 286 KPQTRIELLSRLSDIEYSISRGGTDSIQTSATIGTIKQCMEL 327
KP +I +L +L+ IE+ +S G ++ IQ SA I +IK ++L
Sbjct: 178 KPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASIKTGVDL 219
>ECU02g0290 [L] KOG0990 Replication factor C subunit RFC5
Length = 305
Score = 208 bits (529), Expect = 1e-53
Identities = 123/307 (40%), Positives = 183/307 (59%), Gaps = 16/307 (5%)
Query: 12 EKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSNYR 71
EKYRP +L +V G + VV++++ GR+P++LFYGPPGTGKT++I A+A + R
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLP----R 62
Query: 72 NMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIER 131
VLELNASD+RGI VR IKEFAST +SK KL+ILDEAD M+ AQNALRRIIE
Sbjct: 63 TSVLELNASDERGIATVRETIKEFAST---YSKTMKLVILDEADMMSRDAQNALRRIIED 119
Query: 132 YTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAA 191
++ NTRFC++AN+ K+ +LSRCT+FRF P+ + E RI + +E +K P+ A
Sbjct: 120 FSANTRFCLIANHLRKIISPILSRCTKFRFGPIGD--TENRIEEICKRESIKYTPEGIKA 177
Query: 192 LLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESILKDDW 251
+ R+S GDMR+A+N +Q A+L +V E + G E + ++
Sbjct: 178 VSRISMGDMRKAVNDIQGISASLG-----QVDESNVRRFNGIAPSSVYEELFRNLGSMGM 232
Query: 252 TTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSISRGGTDS 311
+ ++R + ++ + L+ E K + ++++L +SDIEY S G ++
Sbjct: 233 PELRVELERLRYEYSMDCDALLGNLGELVR--ESKMRNKMKILKEMSDIEYRKSIGCSEK 290
Query: 312 IQTSATI 318
+Q A I
Sbjct: 291 VQLDAII 297
>At1g63160 [L] KOG0991 Replication factor C subunit RFC2
Length = 333
Score = 204 bits (519), Expect = 1e-52
Identities = 109/289 (37%), Positives = 176/289 (60%), Gaps = 7/289 (2%)
Query: 7 NLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIY 66
N PW+EKYRP + D+ G ++ V+ ++ +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 67 GSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 125
G+NY+ VLELNASDDRGIDVVRN+IK FA + G K++ILDEAD+MT+ AQ AL
Sbjct: 74 GTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQAL 133
Query: 126 RRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLD 185
RR IE Y+ +TRF + N + K+ + SRC RF LS+Q I R+ V+ E +
Sbjct: 134 RRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYV 193
Query: 186 PQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLES 245
P+ A++ + GDMR+ALN LQA + V ++ +++ PHP ++ ++ +
Sbjct: 194 PEGLEAIIFTADGDMRQALNNLQATFSGF-----SFVNQENVFKVCDQPHPLHVKNIVRN 248
Query: 246 ILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELL 294
+L+ + + ++ G + D+I + +++ Y++ ++E +
Sbjct: 249 VLESKFDIACDGLKQL-YDLGYSPTDIITTLFRIIKNYDMAEYLKLEFM 296
>SPAC23D3.02 [L] KOG0989 Replication factor C subunit RFC4
Length = 340
Score = 203 bits (516), Expect = 3e-52
Identities = 120/335 (35%), Positives = 196/335 (57%), Gaps = 26/335 (7%)
Query: 2 ERTSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVAL 61
+ +++PW+E YRP+TLD V Q++ V ++K L LPH+LFYG PGTGKTSTI+AL
Sbjct: 13 QEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILAL 72
Query: 62 AREIYGSNY-RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSK-------GFKLIILDE 113
+RE++G ++ VLELNASD+RGI ++R ++K FA T + +K FK+IILDE
Sbjct: 73 SRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTT-VTNKVDGYPCPPFKIIILDE 131
Query: 114 ADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRI 173
AD+MT AQ ALRR +E Y + TRFC++ NY ++ L SRC+++RF+PL + + +R+
Sbjct: 132 ADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRL 191
Query: 174 ANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGA 233
+ + + ++P AL+ S GDMR+A+ LQ+A A L +T + E GA
Sbjct: 192 EFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSA-ANLH--QGTPITISSVEELAGA 248
Query: 234 PHPRDLETMLESILKDDWTTTTYTVNKIR-ITKGLALIDMIEGIA------GLLEQYELK 286
+ ++L+ T T V+ I +++ +A GI LL++ L
Sbjct: 249 VPYNIIRSLLD-------TAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLS 301
Query: 287 PQTRIELLSRLSDIEYSISRGGTDSIQTSATIGTI 321
+ ++ +LS+++ ++ G +++Q + +I
Sbjct: 302 SPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSSI 336
>At1g21690 [L] KOG0989 Replication factor C subunit RFC4
Length = 336
Score = 202 bits (515), Expect = 4e-52
Identities = 106/211 (50%), Positives = 144/211 (68%), Gaps = 9/211 (4%)
Query: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
PW+EKYRP+ + DV Q+ VV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST------RQIF--SKGFKLIILDEADAMTN 119
Y++ VLELNASDDRGI+VVR +IK+FA+ RQ FK+IILDEAD+MT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 120 AAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVK 179
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PLSE+ + RI ++ +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 180 EHLKLDPQAHAALLRLSSGDMRRALNVLQAA 210
E L LD +A + L +S GD+RRA+ LQ+A
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSA 220
>CE17139 [L] KOG0991 Replication factor C subunit RFC2
Length = 334
Score = 199 bits (506), Expect = 5e-51
Identities = 117/318 (36%), Positives = 178/318 (55%), Gaps = 11/318 (3%)
Query: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
PW+EKYRP+ L D+ G +N+V ++ HEG +P+++ GPPG GKT+++ ALARE+ G
Sbjct: 11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD 70
Query: 69 NYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALRR 127
+ VLELNASD+RGIDVVR++IK FA T+ +G K+IILDEAD+MT+ AQ ALRR
Sbjct: 71 KVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRR 130
Query: 128 IIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQ 187
+E YTK TRF + N + K+ + SRC R+ LS + R+ V E + D
Sbjct: 131 TMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDG 190
Query: 188 AHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESIL 247
A+L + GDMR+ALN LQA E V ++ + + PHP + ML
Sbjct: 191 GLEAILFTAQGDMRQALNNLQATVNAY-----ELVNKENVLKVCDEPHPDLMIKMLHYCT 245
Query: 248 KDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYEL----KPQTRIELLSRLSDIEYS 303
+ + +++ G + D++ + +++ EL Q R+E + +++
Sbjct: 246 DRKFFEASKIIHEFH-RLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMR 304
Query: 304 ISRGGTDSIQTSATIGTI 321
I +G T +Q S I +
Sbjct: 305 IVQGLTSKLQLSRLIADL 322
>Hs4506487 [L] KOG0991 Replication factor C subunit RFC2
Length = 354
Score = 194 bits (494), Expect = 1e-49
Identities = 110/317 (34%), Positives = 180/317 (56%), Gaps = 7/317 (2%)
Query: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG 67
LPW+EKYRP L+++ G ++ V+ + F EG +P+++ GPPGTGKT++I+ LAR + G
Sbjct: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 95
Query: 68 SNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALR 126
++ +LELNAS+DRGIDVVRN+IK FA + KG K+IILDEAD+MT+ AQ ALR
Sbjct: 96 PALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALR 155
Query: 127 RIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDP 186
R +E Y+K TRF + N + K+ + SRC R+ L++ I R+ NV+ KE +
Sbjct: 156 RTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD 215
Query: 187 QAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESI 246
A++ + GDMR+ALN LQ+ + ++E V ++ PHP ++ M++
Sbjct: 216 DGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV-----FKVCDEPHPLLVKEMIQHC 270
Query: 247 LKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSISR 306
+ + Y + G + D+I I + + +++ ++E + + I+
Sbjct: 271 VNAN-IDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAE 329
Query: 307 GGTDSIQTSATIGTIKQ 323
G +Q + + + Q
Sbjct: 330 GVNSLLQMAGLLARLCQ 346
>YOL094c [L] KOG0991 Replication factor C subunit RFC2
Length = 323
Score = 194 bits (493), Expect = 1e-49
Identities = 112/331 (33%), Positives = 178/331 (52%), Gaps = 34/331 (10%)
Query: 5 SENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALARE 64
S LPW+EKYRP+ L D+ G + ++ +++ +G +PH++ G PG GKT+++ LA E
Sbjct: 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65
Query: 65 IYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQN 123
+ G +Y + VLELNASDDRGIDVVRNQIK FA + G K++ILDEAD+MT AQ
Sbjct: 66 LLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQ 125
Query: 124 ALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLK 183
ALRR +E Y+ +TRF N ++K+ L SRC R+ LS++ + +R+ ++ E +K
Sbjct: 126 ALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVK 185
Query: 184 LDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHP------- 236
A++ + GDMR+A+N LQ+ A V D +++ + +PHP
Sbjct: 186 YTNDGLEAIIFTAEGDMRQAINNLQSTVA-----GHGLVNADNVFKIVDSPHPLIVKKML 240
Query: 237 --RDLETMLESILKDDW----TTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTR 290
+LE ++ + D W ++ R+TK LA ++K R
Sbjct: 241 LASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLA---------------QVKESVR 285
Query: 291 IELLSRLSDIEYSISRGGTDSIQTSATIGTI 321
+E++ + I G +Q ++ + I
Sbjct: 286 LEMIKEIGLTHMRILEGVGTYLQLASMLAKI 316
>YJR068w [L] KOG0989 Replication factor C subunit RFC4
Length = 353
Score = 194 bits (492), Expect = 2e-49
Identities = 111/273 (40%), Positives = 165/273 (59%), Gaps = 18/273 (6%)
Query: 2 ERTSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVAL 61
E++ PW+EKYRP+ LD+V Q + V ++K L LPH+LFYGPPGTGKTSTI+AL
Sbjct: 19 EQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78
Query: 62 AREIYGSNY-RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG------------FKL 108
+E+YG + ++ +LELNASD+RGI +VR ++K FA R SK +K+
Sbjct: 79 TKELYGPDLMKSRILELNASDERGISIVREKVKNFA--RLTVSKPSKHDLENYPCPPYKI 136
Query: 109 IILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQA 168
IILDEAD+MT AQ+ALRR +E Y+ TRFC++ NY ++ L SRC++FRF+ L
Sbjct: 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASN 196
Query: 169 IERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQ-AARATLDNPDTEEVTEDLI 227
R+ + +E++K D +L +S+GD+RR + +LQ A++ D + +T +
Sbjct: 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQV 256
Query: 228 YECIG-APHPRDLETMLESILKDDWTTTTYTVN 259
E G PH +E ++E + D+ VN
Sbjct: 257 EELAGVVPHDILIE-IVEKVKSGDFDEIKKYVN 288
>SPAC1687.03c [L] KOG0991 Replication factor C subunit RFC2
Length = 342
Score = 191 bits (486), Expect = 1e-48
Identities = 111/313 (35%), Positives = 172/313 (54%), Gaps = 8/313 (2%)
Query: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG 67
LPW+EKYRP LDD+ G + ++ ++ EG +PHL+ G PG GKT++I+ LA + G
Sbjct: 21 LPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLG 80
Query: 68 SNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNALR 126
Y+ VLELNASD+RGIDVVRN+IK FA + I G K+IILDEAD+MT AQ ALR
Sbjct: 81 PAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALR 140
Query: 127 RIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDP 186
R +E Y+ TRF + N ++K+ + SRC R+ L++Q + +R+ N+ E +
Sbjct: 141 RTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTD 200
Query: 187 QAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESI 246
AAL+ + GDMR+A+N LQ+ A + E V + P P + ML +
Sbjct: 201 DGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENV-----FRVADQPSPVAIHAMLTAC 255
Query: 247 LKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQ-TRIELLSRLSDIEYSIS 305
+ + I G + +D++ + +++ + P+ +R+E+L + I
Sbjct: 256 QSGNIDVALEKLQGI-WDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIIL 314
Query: 306 RGGTDSIQTSATI 318
G +Q S +
Sbjct: 315 EGVQTLLQLSGLV 327
>7292439 [L] KOG0991 Replication factor C subunit RFC2
Length = 331
Score = 186 bits (471), Expect = 5e-47
Identities = 109/323 (33%), Positives = 171/323 (52%), Gaps = 9/323 (2%)
Query: 7 NLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIY 66
+LPWIEKYRP ++ G ++ V + F +G P+++ GPPG GKT+TI LAR +
Sbjct: 15 HLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILL 74
Query: 67 GSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 125
G +Y+ VLELNAS++RGIDVVRN+IK FA + +G K++ILDEAD+MT AQ AL
Sbjct: 75 GDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQAL 134
Query: 126 RRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLD 185
RR +E Y+ TRF + N + K+ + SRC RF LS+ + ++ V E L
Sbjct: 135 RRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYT 194
Query: 186 PQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLES 245
A++ + GDMR+ LN LQ+ ++T + +++ PHP+ LE M+
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-----DITAENVFKVCDEPHPKLLEEMIHH 249
Query: 246 ILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSIS 305
+D Y + G + D+I I + ++ + +++ + + I
Sbjct: 250 CAAND-IHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKII 308
Query: 306 RGGTDSIQTSATIGTIKQCMELE 328
G +Q +A + K C+ E
Sbjct: 309 DGINSLLQLTALLA--KLCIAAE 329
>SPAPJ698.01c [L] KOG0990 Replication factor C subunit RFC5
Length = 142
Score = 183 bits (464), Expect = 3e-46
Identities = 85/124 (68%), Positives = 103/124 (82%)
Query: 4 TSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAR 63
+ LPW+EKYRP L+DV +++++T+ KF+ R+PH+LFYGPPGTGKTSTI+A AR
Sbjct: 19 SESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACAR 78
Query: 64 EIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 123
+IYG NYRN ++ELNASDDRGID VR QIK FASTRQIF+ FK+IILDEADAMT AAQN
Sbjct: 79 KIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQN 138
Query: 124 ALRR 127
ALRR
Sbjct: 139 ALRR 142
>ECU09g1330 [L] KOG0991 Replication factor C subunit RFC2
Length = 309
Score = 177 bits (449), Expect = 2e-44
Identities = 105/277 (37%), Positives = 161/277 (57%), Gaps = 10/277 (3%)
Query: 11 IEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSNY 70
+ KY+P + D+ G + + V + +PHLLF GPPGTGKT+ LAR + G+
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN-- 62
Query: 71 RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIE 130
+ +LELNASD+RGID VR IK FA R++ FK+IILDEAD+MT AQ A+RR++E
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQ-RRVKDCEFKIIILDEADSMTTTAQQAMRRVME 121
Query: 131 RYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHA 190
++ RF ++ N K+ + SRC RF + + I +R+ + E +++ +A
Sbjct: 122 IHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALD 181
Query: 191 ALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESILKDD 250
++ LS GDMR++LN+LQA +++P T V +D I + IG P P+ +E +L+ +LK +
Sbjct: 182 LVVELSDGDMRQSLNILQAC---INSPGT--VDQDYIIKIIGLPSPKRIEKVLQRLLKRE 236
Query: 251 WTTTTYTVNKIRITK--GLALIDMIEGIAGLLEQYEL 285
++I K L LI+ A +E YEL
Sbjct: 237 VEEALEMFDEIWEEKFDPLDLINSFFRAAKNMESYEL 273
>CE01268 [L] KOG0989 Replication factor C subunit RFC4
Length = 334
Score = 175 bits (444), Expect = 7e-44
Identities = 96/218 (44%), Positives = 135/218 (61%), Gaps = 8/218 (3%)
Query: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG 67
L W EKYRP+TLDD+ Q VV ++ L LPHLLFYGPPGTGKTS +A R+++
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 68 SN-YRNMVLELNASDDRGIDVVRNQIKEFA------STRQIFSKGFKLIILDEADAMTNA 120
N + + VL+LNASD+RGI VVR +I+ F+ S R+ K K+IILDE DAMT
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK-LKIIILDEVDAMTRE 133
Query: 121 AQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKE 180
AQ A+RR+IE ++K TRF ++ NY +L P ++SRC +FRF+ L + +R+ + E
Sbjct: 134 AQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAE 193
Query: 181 HLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPD 218
+ ++ S GD+RRA+ LQ+ L + D
Sbjct: 194 GTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGD 231
>7293390 [L] KOG0989 Replication factor C subunit RFC4
Length = 288
Score = 170 bits (431), Expect = 2e-42
Identities = 99/277 (35%), Positives = 164/277 (58%), Gaps = 9/277 (3%)
Query: 44 LLFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFA--STRQI 101
+L YGPPGTGKTSTI+A +R+I+G +++ +LELNASD+RGI+VVR +IK F+ S +
Sbjct: 1 MLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSV 60
Query: 102 FSKG-----FKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRC 156
G FK+IILDEAD+MT+AAQ+ALRR +E+ +++TRFC++ NY ++ + SRC
Sbjct: 61 RPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 120
Query: 157 TRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDN 216
++FRF+ L E + R+ + E +K++ A+ +++++S GD+RRA+ LQ+ L
Sbjct: 121 SKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC-YRLKG 179
Query: 217 PDTEEVTEDLIYECIGAPHPRDLETMLESILKDDWTTTTYTVNKIRITKGLALIDMIEGI 276
P+ T DL +E G LE LE ++ V +I + M + +
Sbjct: 180 PEHIINTADL-FEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFV 238
Query: 277 AGLLEQYELKPQTRIELLSRLSDIEYSISRGGTDSIQ 313
++ L + + +L + + + GG++ +Q
Sbjct: 239 EFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQ 275
>ECU02g0680 [L] KOG0989 Replication factor C subunit RFC4
Length = 283
Score = 134 bits (336), Expect = 2e-31
Identities = 84/199 (42%), Positives = 116/199 (58%), Gaps = 19/199 (9%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSN 69
W EKYRP++ D G +++ N +R G P+LL YGPPGTGKT+ LA +
Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFAHLLASQ----- 56
Query: 70 YRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 129
LELNASD+RGI V+R +IK +AST K K +ILDE + +T+ AQ+ LRR+I
Sbjct: 57 ----KLELNASDERGISVIREKIKVYAST---LGKD-KTVILDECENLTSDAQHCLRRVI 108
Query: 130 ERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAH 189
E + NTRF + NY K+ L SR +F P + +E N+ KE L D + +
Sbjct: 109 ED-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTPTESKILE----NIGSKEGLGYDKELY 163
Query: 190 AALLRLSSGDMRRALNVLQ 208
+L+L D+RRA+NVLQ
Sbjct: 164 HRILKLCGNDLRRAINVLQ 182
>At5g27740 [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 125 bits (313), Expect = 1e-28
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 32/234 (13%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSN 69
W++KYRP++LD V +++ ++K + E PHLLFYGP G+GK + I+AL ++IYG++
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 70 YRNMVLELNA----SDDRGID-------------------------VVRNQIKEFASTRQ 100
+ +E A + R ID +V+ IKE A R
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122
Query: 101 IFSKG---FKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCT 157
I +KG +K+++L+E D ++ AQ++LRR +E+Y+ + R + N + K+T A+ SRC
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182
Query: 158 RFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAAR 211
R S++ I + + V KE L+L A + S+ +RRA+ L+ R
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCR 236
>Hs4506489 [DL] KOG2035 Replication factor C subunit RFC3
Length = 356
Score = 105 bits (263), Expect = 7e-23
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 35/234 (14%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG-- 67
W++KYRP +L + + +R + G PHLL YGP G GK + I+ + RE+YG
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 68 -------------------------SNYRNMVLELNASDDRGID--VVRNQIKEFASTRQ 100
SNY LE+N SD D V++ +K A ++Q
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 101 IFS---KGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCT 157
+ + + FK+++L E D +T AQ+ALRR +E+Y R + N K+ P + SRC
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 158 RFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAAR 211
R S + I ++ V KE L L Q L S ++R+AL + +A R
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACR 234
>CE05396 [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 102 bits (254), Expect = 8e-22
Identities = 74/247 (29%), Positives = 119/247 (47%), Gaps = 37/247 (14%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVR-----KFLHEGRLPHLLFYGPPGTGKTSTIVALARE 64
W++KYRP+ D+ G+ V + KFL +PHLLF GP G GK + I L RE
Sbjct: 4 WVDKYRPK---DLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 65 IYG----------------SNYR--------NMVLELNASDDRGID--VVRNQIKEFAST 98
+YG SN + N +E+ SD D VV++ +KE A T
Sbjct: 61 LYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQT 120
Query: 99 RQIFS---KGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSR 155
QI S + FK+++L EAD++T AQ+ LRR +E+Y N + + ++ L SR
Sbjct: 121 SQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSR 180
Query: 156 CTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLD 215
C +++ + + + V+ +E L ++ S G++RRA+ + +A R +
Sbjct: 181 CIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENE 240
Query: 216 NPDTEEV 222
+ E V
Sbjct: 241 SGVAESV 247
>ECU10g0780i [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 98.2 bits (243), Expect = 1e-20
Identities = 87/333 (26%), Positives = 142/333 (42%), Gaps = 55/333 (16%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS- 68
WIEKYRP + D++ G++ ++ + E +PH++ +G G GK + ++ L +YGS
Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGSI 61
Query: 69 ------------NYRNMVLELNASDD-----------RGIDVVRNQIKEFASTRQIFSK- 104
+ + + SD+ V+++ IKE T+ I S
Sbjct: 62 PEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSML 121
Query: 105 ------GFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTR 158
KL+++ A+ +T AQ ALRR IE Y+ R ++ N +L + SRC
Sbjct: 122 ARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFF 181
Query: 159 FRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVL----------Q 208
R S++ + + +L KE+ + + + R S GDMRRAL VL +
Sbjct: 182 LRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNESE 241
Query: 209 AARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESILKDDWTTTTYTVNKIRITKGLA 268
A RA + D + E + G + L I K T Y + I
Sbjct: 242 AKRAKIGGRDLKLEWELAVMSIAGVVKCNQTSSGLVEIRK-----TLYMLLNSCIPPRTI 296
Query: 269 LIDMIEG-IAG-------LLEQYELKPQTRIEL 293
L++++ I G LL Q+ LK + RI L
Sbjct: 297 LVELLRNLILGEDFRTFLLLSQHALKYEERIRL 329
>YBR087w [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 97.1 bits (240), Expect = 3e-20
Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 36/236 (15%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGR-LPHLLFYGPPGTGKTSTIVALAREIYGS 68
W++KYRP++L+ + + + N ++ + R LPHLL YGP GTGK + +AL I+G
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 69 N-YR------------NMVLELNA-----------SDDRGID--VVRNQIKEFASTRQI- 101
YR N LELN SD D V++ +KE A Q+
Sbjct: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
Query: 102 -------FSKGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLS 154
+ +K +I++EA+++T AQ ALRR +E+Y+KN R ++ + + + S
Sbjct: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
Query: 155 RCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQ-AHAALLRLSSGDMRRALNVLQA 209
RC R S+ I +++V+ E ++L+ + + + S+G++R +L +L++
Sbjct: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>7297827 [DL] KOG2035 Replication factor C subunit RFC3
Length = 318
Score = 94.7 bits (234), Expect = 2e-19
Identities = 67/196 (34%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 45 LFYGPPGTGKTSTIVALAREIYGSNYR------------------------NMVLELNAS 80
+FYGP G GK + I+ L RE+YGS N LE+N S
Sbjct: 1 MFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPS 60
Query: 81 DDRGID--VVRNQIKEFASTRQIFSKG---FKLIILDEADAMTNAAQNALRRIIERYTKN 135
D D VV + IK+ A T QI G FK+I++ E D +T AQ+ALRR +E+Y
Sbjct: 61 DAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVAT 120
Query: 136 TRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRL 195
R I N ++ PA+ SRC R +E I + N +E L L + ++
Sbjct: 121 CRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDK 180
Query: 196 SSGDMRRALNVLQAAR 211
S ++RRAL +L+AA+
Sbjct: 181 SERNLRRALLMLEAAK 196
>SPBC83.14c [DL] KOG2035 Replication factor C subunit RFC3
Length = 358
Score = 89.7 bits (221), Expect = 5e-18
Identities = 59/232 (25%), Positives = 107/232 (45%), Gaps = 29/232 (12%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSN 69
W+++YRP+TL + + + + PHLL YGP G GK + +VA+ RE+YG
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 70 YRNMV------------------------LELNASDDRGID--VVRNQIKEFASTRQI-- 101
+ LE+ SD D +++ +K+ A + Q+
Sbjct: 63 SEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122
Query: 102 -FSKGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFR 160
K FK+++++ AD +T AQ ALRR +E+Y+ N R ++AN K+ + SR R
Sbjct: 123 QAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVR 182
Query: 161 FQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARA 212
+ + I ++ +L + L+ + ++R+A+ +L+ A
Sbjct: 183 VAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHA 234
>At1g14460 [L] KOG0989 Replication factor C subunit RFC4
Length = 1102
Score = 84.7 bits (208), Expect = 2e-16
Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 31/292 (10%)
Query: 12 EKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHL-LFYGPPGTGKTSTIVALAREI----- 65
+KY+P D++ GQ VV ++ + +GR+ H+ LF GP GTGKTST L+ +
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485
Query: 66 ---------------YGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLII 110
Y +LEL+A G + VR +K+ + S+ +K+ +
Sbjct: 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFV 545
Query: 111 LDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIE 170
+DE + + +L + +E + F + + + SRC ++ F + + I
Sbjct: 546 IDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIV 605
Query: 171 RRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYEC 230
R+ + E+L ++ QA + + G +R A +L+ + +T DL+ E
Sbjct: 606 VRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLM-----GKRITVDLVNEL 660
Query: 231 IGAPHPRDLETMLESILKDDWTTTTYTVNKIR--ITKGLALIDMIEGIAGLL 280
+G L +LE L D T TV K R + G I M+ +A L+
Sbjct: 661 VGVVSDDKLLELLELALSSD---TAETVKKARELLDLGADPILMMSQLASLI 709
>At4g24790 [L] KOG0989 Replication factor C subunit RFC4
Length = 815
Score = 82.4 bits (202), Expect = 8e-16
Identities = 72/312 (23%), Positives = 138/312 (44%), Gaps = 35/312 (11%)
Query: 12 EKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHL-LFYGPPGTGKTSTIVALAREI----- 65
+K+RP++ D++ GQ+ VV + + GR+ + LF+GP GTGKTST A +
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQ 302
Query: 66 ---------------YGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLII 110
Y S V+E ++ +R+ IK AS + S+ FK+ I
Sbjct: 303 AAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKS-ASLPPVSSR-FKVFI 360
Query: 111 LDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIE 170
+DE + L ++ +++++ F ++ + KL +LSR ++ F + + I
Sbjct: 361 IDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADIS 420
Query: 171 RRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYEC 230
++A + ++E + D A + S G +R A +L + +T L Y+
Sbjct: 421 TKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLL-----GKRITTSLAYKL 475
Query: 231 IGAPHPRDLETMLESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLL------EQYE 284
IG +L +L+ + D + T ++ +K + + +I +A ++ E
Sbjct: 476 IGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSK-IDPMQLISQLANVIMDIIAGNSQE 534
Query: 285 LKPQTRIELLSR 296
TR+ L+R
Sbjct: 535 SSSATRLRFLTR 546
>ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 568
Score = 81.3 bits (199), Expect = 2e-15
Identities = 61/206 (29%), Positives = 101/206 (48%), Gaps = 12/206 (5%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPH--LLFYGPPGTGKTSTIVALAREIYG 67
W EKYRP D++ G Q +V + +L +GR + +L G PG GKT+T + + + G
Sbjct: 113 WSEKYRPSKRDEIVGNQGIVKQLEDYL-QGRTKYKAVLLSGQPGIGKTTTAHVVCKSL-G 170
Query: 68 SNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG---FKLIILDEADAMTNAAQNA 124
N V+E NASD R + N++K F S++ I G K++I+DE D M++
Sbjct: 171 LN----VIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKSKVLIMDEVDGMSSDRGGI 226
Query: 125 LRRI-IERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLK 183
I I + T CI + + L S C RF+ + I R+ +L E K
Sbjct: 227 PELISIVKETVVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQILSRVKQILDMEGKK 286
Query: 184 LDPQAHAALLRLSSGDMRRALNVLQA 209
+ ++ +GD+R ++++Q+
Sbjct: 287 IPDGLLNEIISRGAGDIRYTISMVQS 312
>SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 934
Score = 76.3 bits (186), Expect = 6e-14
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 40/231 (17%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHE-----------------GRLPHLLFYGPPGT 52
W KY P +L D+ G + VV ++K+L + G +L GPPG
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 53 GKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQI----------- 101
GKT T L ++ G + VLELNASD R ++ Q+ ++ +
Sbjct: 421 GKT-TAAHLVAKLEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPV 475
Query: 102 -FSKGFKLIILDEADAMTNAAQNALRRI--IERYTKNTRFCILANYAH-KLTPALLSRCT 157
+K ++I+DE D M++ + + ++ I + + CI + AH KL P L R T
Sbjct: 476 DMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKLRP--LDRTT 533
Query: 158 -RFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVL 207
RF+ ++ RI ++ +E LKL PQA L++ + DMR+ +N+L
Sbjct: 534 FDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLL 584
>At2g02480 [L] KOG0989 Replication factor C subunit RFC4
Length = 1153
Score = 75.9 bits (185), Expect = 8e-14
Identities = 64/271 (23%), Positives = 111/271 (40%), Gaps = 28/271 (10%)
Query: 12 EKYRPETLDDVYGQQNVVNTVRKFLHEGRL-PHLLFYGPPGTGKTSTIVALAREI----- 65
+KYRP +++ GQ VV ++ + R+ P LF GP GTGKTST + +
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVAT 512
Query: 66 --------------YGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIIL 111
+ S EL+ ++ +G D VR +K + S +K+ ++
Sbjct: 513 EEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVI 572
Query: 112 DEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIER 171
DE + + + + +E + F + + + SRC +F F L + I
Sbjct: 573 DECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVV 632
Query: 172 RIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECI 231
R+ + E+L +D A + + G +R A +L+ + +T L+ E +
Sbjct: 633 RLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLL-----GKRITTALVNELV 687
Query: 232 GAPHPRDLETMLESILKDDWTTTTYTVNKIR 262
G L +LE L D T TV + R
Sbjct: 688 GVVSDEKLLELLELALSSD---TAETVKRAR 715
>At1g24290 [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 525
Score = 73.9 bits (180), Expect = 3e-13
Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 42/281 (14%)
Query: 6 ENLPWIEKYRPETLDDVYGQQNVVNT---VRKFLHEGRLPHLLFYGPPGTGKTSTIVALA 62
++ P E+ RP TLDDV GQ ++++ +R + RLP ++F+GPPGTGKTS +L
Sbjct: 99 QHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLI 158
Query: 63 REIYG-SNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAA 121
S YR + L S G+ VR+ + E A + + ++ +DE +
Sbjct: 159 NSSKDPSLYRFVSLSAVTS---GVKDVRDAV-ESAKRLNLEGRKRTVLFMDEVHRFNKSQ 214
Query: 122 QNALRRIIE--------RYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRI 173
Q+ +IE T+N F H +TP LLSRC PL +E +
Sbjct: 215 QDTFLPVIEDGSILFIGATTENPSF-------HLITP-LLSRCRVLTLNPLKPNHVETLL 266
Query: 174 ANVL------VKEHLKLDPQAHAALLRLSSGDMRRALNVLQAAR----------ATLDNP 217
+ + +++D L GD R ALN L+ + A +
Sbjct: 267 RRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAVVSID 326
Query: 218 DTEEVTE--DLIYECIGAPHPRDLETMLESILKDDWTTTTY 256
D +E + L Y+ G H + + +S+ D Y
Sbjct: 327 DAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIY 367
>Hs15011931 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 1148
Score = 72.4 bits (176), Expect = 8e-13
Identities = 66/248 (26%), Positives = 108/248 (42%), Gaps = 49/248 (19%)
Query: 2 ERTSENLPWIEKYRPETLDDVYGQQNVVNTVRKFL---------------HEGRLPHL-- 44
E ENL W++KY+P +L + GQQ + K L H +
Sbjct: 578 ENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSG 637
Query: 45 ----------LFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKE 94
L GPPG GKT+T + +E+ G +Y +ELNASD R ++ + E
Sbjct: 638 KDDGSSFKAALLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKSSLKAIVAE 692
Query: 95 FASTRQIFSKGF------------KLIILDEADAMT-NAAQNALRRIIE--RYTKNTRFC 139
+ I KGF +I+DE D M N + ++ +I ++TK C
Sbjct: 693 SLNNTSI--KGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIIC 750
Query: 140 ILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGD 199
+ + H +L+ C RFQ + I+ + ++ KE LK+ P A ++ ++ D
Sbjct: 751 MCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQD 810
Query: 200 MRRALNVL 207
+R+ L+ L
Sbjct: 811 IRQVLHNL 818
>YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 861
Score = 71.2 bits (173), Expect = 2e-12
Identities = 69/288 (23%), Positives = 121/288 (41%), Gaps = 40/288 (13%)
Query: 6 ENLPWIEKYRPETLDDVYGQQNVVNTVRKFL------------HEGR-----LPHLLFYG 48
E+ W KY P L V G + V ++ +L H G+ + YG
Sbjct: 294 EDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYG 353
Query: 49 PPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFK- 107
PPG GKT+ +A+E+ +LE NASD R ++ +K + FK
Sbjct: 354 PPGIGKTTAAHLVAQELGYD-----ILEQNASDVRSKTLLNAGVKNALDNMSVVGY-FKH 407
Query: 108 ------------LIILDEADAMTNAAQNALRRIIERYTK-NTRFCILANYAHKLTPALLS 154
+II+DE D M+ + + ++ + K +T ++ N +
Sbjct: 408 NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFD 467
Query: 155 R-CTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARAT 213
R C +F+ +I+ R+ + ++E KLDP L++ + GD+R+ +N+L T
Sbjct: 468 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT 527
Query: 214 LDNPDTEEVTE-DLIYECIGAPHPRDL-ETMLESILKDDWTTTTYTVN 259
+ E + E +E A P D+ ML+ + D + +T+N
Sbjct: 528 TKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLN 575
>YNL218w [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 587
Score = 70.5 bits (171), Expect = 3e-12
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)
Query: 7 NLPWIEKYRPETLDDVYGQQNVVN----TVRKFLHEGRLPHLLFYGPPGTGKTSTIVALA 62
+LP EK RP+ L D GQQ++++ T+ K++ +G +P ++ +GPPG GKTS L
Sbjct: 132 HLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARLLT 191
Query: 63 REI--------YGSNY---RNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIIL 111
+ GS Y + N + RGI KE+ T K ++ +
Sbjct: 192 KTATTSSNESNVGSRYFMIETSATKANTQELRGI--FEKSKKEYQLT-----KRRTVLFI 244
Query: 112 DEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQ---- 167
DE Q+ L +E N + +L AL+SRC F + L+
Sbjct: 245 DEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCI 304
Query: 168 AIERRIANV--------LVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATL--DNP 217
+ R IA + ++ LKL ++ LS GD RRALN+L+ +
Sbjct: 305 VLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERKA 364
Query: 218 DTEEVTEDLIYECI 231
D EE++ D + + I
Sbjct: 365 DEEELSIDDVRDII 378
>At5g45720 [L] KOG0989 Replication factor C subunit RFC4
Length = 900
Score = 69.3 bits (168), Expect = 7e-12
Identities = 66/267 (24%), Positives = 110/267 (40%), Gaps = 23/267 (8%)
Query: 12 EKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHL-LFYGPPGTGKTSTIVALAREI----- 65
+KY P T D+ GQ VV + + + R+ L +F+GP GTGKTS AR +
Sbjct: 347 QKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHST 406
Query: 66 YGSNYRNMVLELNASDDRGIDVVRNQ--IKEFASTRQIFSKGFK-------LIILDEADA 116
S + + DD +R +K F + + ++I D+ D
Sbjct: 407 EQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQLVLIFDDCDT 466
Query: 117 MTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANV 176
M+ N L +I++R + F ++ + L ++SRC +F F L + I + +
Sbjct: 467 MSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLI 526
Query: 177 LVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHP 236
KE + +D A + S G +R A L+ ++ L+ E +G
Sbjct: 527 ASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL-----GTRISVPLVQEMVGLISD 581
Query: 237 RDLETMLESILKDDWTTTTYTVNKIRI 263
L +L+ L D T TV +RI
Sbjct: 582 EKLVDLLDLALSAD---TVNTVKNLRI 605
>SPAC26H5.02c [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 497
Score = 67.4 bits (163), Expect = 3e-11
Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 24/270 (8%)
Query: 9 PWIEKYRPETLDDVYGQQNVV---NTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREI 65
P E+ RP++LD+ GQ+ +V +R + + R ++ +G GTGKT+ LAR +
Sbjct: 85 PLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT----LAR-L 139
Query: 66 YGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNAL 125
++ +E++A+ D +I E + + +I LDE A Q+
Sbjct: 140 IAVTTKSRFIEISATSTTVADC--RKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIF 197
Query: 126 RRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLD 185
++E+ N + +L AL+SRC F + L+ +++ + + + E +L
Sbjct: 198 LPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERLG 257
Query: 186 ---PQAHAALL----RLSSGDMRRALNVLQAA-------RATLDNPDTEEVTEDLIYECI 231
P +++ ++ GD R ALN L+ + +L++ + V +Y+ +
Sbjct: 258 SSMPNVETSIIDYISAITDGDARMALNALEMSIGMLRQGPLSLEDIKDKLVRSSALYDRV 317
Query: 232 GAPHPRDLETMLESILKDDWTTTTYTVNKI 261
G H + +S+ D T Y + ++
Sbjct: 318 GDVHYDTISAFHKSVRGSDVDATLYYLGRM 347
>7296805 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 986
Score = 67.4 bits (163), Expect = 3e-11
Identities = 55/262 (20%), Positives = 113/262 (42%), Gaps = 50/262 (19%)
Query: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFL---------HEGR-----------------L 41
+ W++K++P ++ ++ GQ + V K + H+G
Sbjct: 421 MAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFY 480
Query: 42 PHLLFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQI 101
L GPPG GKT+T + +E+ +E NASD R ++++++ S + +
Sbjct: 481 KAALLSGPPGIGKTTTATLVVKELGFD-----AVEFNASDTRSKRLLKDEVSTLLSNKSL 535
Query: 102 FSKGF-----------KLIILDEADAMT-NAAQNALRRIIERYTKNT--RFCILANYAHK 147
G+ ++I+DE D M N + ++ +I ++ C+ + H
Sbjct: 536 --SGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHP 593
Query: 148 LTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSSGDMRRALN-- 205
+L++ C RFQ + I+ +I ++ KE +K+ P ++ ++ D+R+++N
Sbjct: 594 KIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHI 653
Query: 206 -VLQAARATLDNPDTEEVTEDL 226
+L A + T+DL
Sbjct: 654 ALLSAKEDASQKSGQQVATKDL 675
>Hs22058826 [L] KOG0990 Replication factor C subunit RFC5
Length = 118
Score = 65.5 bits (158), Expect = 1e-10
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 128 IIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQ 187
+IE++T+NTRFC++ NY K+ PAL SRCTRFRF PL+ + + R+ +V+ +E K +P
Sbjct: 14 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE--KKNPG 71
Query: 188 AHAALLRLSSGDMRRALNVLQAARA 212
+ + D + L ARA
Sbjct: 72 QERIVELFLAVDGESKIQFLGTARA 96
>Hs18426902 [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 665
Score = 64.3 bits (155), Expect = 2e-10
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 9 PWIEKYRPETLDDVYGQQNVVNT---VRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREI 65
P + RP+TL D +GQ V +R L +P L+ +GPPG GKT+ LA I
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 281
Query: 66 YGSNYRNMV--LELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 123
++ ++ + + L+A++ + D VR+ IK+ A + F K ++ +DE + Q+
Sbjct: 282 ASNSKKHSIRFVTLSATNAKTND-VRDVIKQ-AQNEKSFFKRKTILFIDEIHRFNKSQQD 339
Query: 124 ALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQA---IERRIANVL--- 177
+E T N + ++ ALLSRC + L +A I R N L
Sbjct: 340 TFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIH 399
Query: 178 -VKEHLKLDPQAHAA-----------------LLRLSSGDMRRALNVLQAA 210
+ DP +H++ L LS GD R LN LQ A
Sbjct: 400 VLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLA 450
>Hs14777079 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 1003
Score = 59.3 bits (142), Expect = 7e-09
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 45 LFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSK 104
L GPPG GKT+ +AR S V+E+NASDDR +V R +I+ +
Sbjct: 399 LLCGPPGLGKTTLAHVIARHAGYS-----VVEMNASDDRSPEVFRTRIEAATQMESVLGA 453
Query: 105 GFK--LIILDEADAMTNAAQNALRRIIER--------------------------YTKNT 136
G K +++DE D AA N L I+ R
Sbjct: 454 GGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRP 513
Query: 137 RFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLS 196
CI + L + F P + +R+ V +++ ++ DP AAL +
Sbjct: 514 IICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKT 573
Query: 197 SGDMRRALNVLQ 208
D+R +N LQ
Sbjct: 574 DNDIRACINTLQ 585
>Hs18426904 [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 640
Score = 56.2 bits (134), Expect = 6e-08
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 9 PWIEKYRPETLDDVYGQQNVVNT---VRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREI 65
P + RP+TL D +GQ V +R L +P L+ +GPPG GKT+ LA I
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 281
Query: 66 YGSNYRNMV--LELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDE-----ADAMT 118
++ ++ + + L+A++ + D VR+ IK+ A + F K ++ +DE
Sbjct: 282 ASNSKKHSIRFVTLSATNAKTND-VRDVIKQ-AQNEKSFFKRKTILFIDEIHRFNKSQQV 339
Query: 119 NAAQNALRRII--ERYTKNTRFCILANYAHKLTPALL--SRCTRFRFQPLSEQAIERRIA 174
NAA + R+I E+ IL + L +L SR T PLS +
Sbjct: 340 NAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPT----DPLSHS------S 389
Query: 175 NVLVKEHLKLDPQAHAALLRLSSGDMRRALNVLQAA 210
N + + ++ +A L LS GD R LN LQ A
Sbjct: 390 NSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLA 425
>SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 960
Score = 52.0 bits (123), Expect = 1e-06
Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 57/265 (21%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLH--------EGRLPH------------------ 43
W++ YRP+ D+ G + V ++ + RL
Sbjct: 353 WVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTNITSDSD 412
Query: 44 ------LLFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFAS 97
++ G G GKT+ +A + + Y+ VLE+NASDDR V ++ S
Sbjct: 413 RPDKRIMMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDRTAHTVHEKVSSAIS 467
Query: 98 TRQIFSKGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHK---------- 147
S +I+DE D A AL ++E K T + N K
Sbjct: 468 NHSALSSQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKKLCRPI 527
Query: 148 -------LTPA---LLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLRLSS 197
TPA L F+P + ++ R+ + E++ +D ++ L + +
Sbjct: 528 ICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYN 587
Query: 198 GDMRRALNVLQAARATLDNPDTEEV 222
D+R +N LQ D+E +
Sbjct: 588 SDIRSCINSLQLLSLNNKRIDSETI 612
>YMR078c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 741
Score = 51.2 bits (121), Expect = 2e-06
Identities = 59/265 (22%), Positives = 102/265 (38%), Gaps = 60/265 (22%)
Query: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHE-------GRLPH------------------- 43
W+EK+RP+ D+ G + + +L + +LP
Sbjct: 116 WVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPLKRPP 175
Query: 44 ---LLFYGPPGTGKTSTIVALAREIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQ 100
LL +GPPG GKTS +A++ S V E+NASD+R +V+ +I
Sbjct: 176 KKILLLHGPPGIGKTSVAHVIAKQSGFS-----VSEINASDERAGPMVKEKIYNLLFNHT 230
Query: 101 I---------------FSKGFKLIILDEADAMTNAAQNAL-----RRIIERYTKNTR--- 137
GF I++D + A L ++ +R K ++
Sbjct: 231 FDTNPVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQPDKKDKKRKKKRSKLLT 290
Query: 138 ---FCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAHAALLR 194
CI N L C + S+ + R+ + KE++ + +A L+
Sbjct: 291 RPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLID 350
Query: 195 LSSGDMRRALNVLQAARATLDNPDT 219
L+ GD+R +N LQ + +D+ D+
Sbjct: 351 LAQGDVRNCINNLQFLASNVDSRDS 375
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,465,497
Number of Sequences: 60738
Number of extensions: 743027
Number of successful extensions: 3015
Number of sequences better than 1.0e-05: 47
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2894
Number of HSP's gapped (non-prelim): 56
length of query: 329
length of database: 30,389,216
effective HSP length: 107
effective length of query: 222
effective length of database: 23,890,250
effective search space: 5303635500
effective search space used: 5303635500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)