ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3376    good          R     KOG1674  General function prediction only                               Cyclin

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3376 1170139  1170984 282  
         (282 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL289w [R] KOG1674 Cyclin                                            209   3e-54
YDL127w [R] KOG1674 Cyclin                                            120   3e-27
YDL179w [R] KOG1674 Cyclin                                            113   3e-25

>YNL289w [R] KOG1674 Cyclin
          Length = 279

 Score =  209 bits (533), Expect = 3e-54
 Identities = 120/243 (49%), Positives = 151/243 (61%), Gaps = 23/243 (9%)

Query: 5   KSLEILFDSPVSDDMIKFLTDHALRVIPTQNRNQRYPPSPPGTPSSKNHNGVPSLMTFIS 64
           K+L IL  SPV+DD+IKFLTD  LRV+P+ N      P+PPG+P  K+   +PSLMTFI+
Sbjct: 6   KALHILLKSPVTDDIIKFLTDTTLRVVPSSNY-----PTPPGSPGEKHLTRLPSLMTFIT 60

Query: 65  RLVRXXXXXXXXXXXXXXXXXRLRELLPSDAAGLPTTCHRIFLACLILSAKYHNDSSPLN 124
           RLVR                 +L+ +LP DA GLP+T HRIFLACLILSAK+HNDSSPLN
Sbjct: 61  RLVRYTNVYTPTLLTAACYLNKLKRILPRDATGLPSTIHRIFLACLILSAKFHNDSSPLN 120

Query: 125 KHWTKYTDGMFTLRDVNLMERQLLQLFEWDLRVESEELWDNLYDLANPIRRDLERGA--- 181
           KHW +YTDG+FTL D+NLMERQLLQL  WDLRV +E+L  +L  L  PI++DL R +   
Sbjct: 121 KHWARYTDGLFTLEDINLMERQLLQLLNWDLRVNTEDLILDLQPLLEPIKQDLARSSDQR 180

Query: 182 -QIN-------KTXXXXXXXXXXXXSQFYYHQRNLSACS--STATLLGNSRSGSINSLDI 231
            +IN       +T             + Y  QRN+S  S  S+ATL+      S N L  
Sbjct: 181 KRINMMMSMNRRTCAGTSPIRSNNRFKLYEKQRNVSIASDLSSATLV-----DSCNDLRR 235

Query: 232 LKE 234
           LK+
Sbjct: 236 LKD 238


>YDL127w [R] KOG1674 Cyclin
          Length = 279

 Score =  120 bits (300), Expect = 3e-27
 Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 10/162 (6%)

Query: 15  VSDDMIKFLTDHALRVIPTQNRNQRYPPSPPGTPSSKNHNGVPSLMTFISRLVRXXXXXX 74
           VS +M+++L      +I  +  N     + P  P +K          FI+RL++      
Sbjct: 15  VSKEMVQYLASTTASIIKIKKTNSMIDIALPAPPLTK----------FINRLIKHSNVQT 64

Query: 75  XXXXXXXXXXXRLRELLPSDAAGLPTTCHRIFLACLILSAKYHNDSSPLNKHWTKYTDGM 134
                      +LR ++PS+  G+ TT HRIFL CLIL+AK  NDSSPLNKHW +YTDG+
Sbjct: 65  PTLMATSVYLAKLRSIIPSNVYGIETTRHRIFLGCLILAAKTLNDSSPLNKHWAEYTDGL 124

Query: 135 FTLRDVNLMERQLLQLFEWDLRVESEELWDNLYDLANPIRRD 176
             LR+VN +ER+LL+ F+WD+ + +++L   L     PI+ +
Sbjct: 125 LILREVNTIERELLEYFDWDVTISTDDLITCLSPFLKPIKEE 166


>YDL179w [R] KOG1674 Cyclin
          Length = 304

 Score =  113 bits (283), Expect = 3e-25
 Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 14  PVSDDMIKFLTDHALRVIPTQNRNQRYPPSPPGTPSSKNHNGVPSLMTFISRLVRXXXXX 73
           PVS +MI+FL      +I  +  N       P           P L  FI  +V      
Sbjct: 15  PVSQEMIQFLATSTASIIKIRENNNPIQGCRP-----------PDLSIFIKNVVIQSNVQ 63

Query: 74  XXXXXXXXXXXXRLRELLPSDAAGLPTTCHRIFLACLILSAKYHNDSSPLNKHWTKYTDG 133
                       +L+ ++P +  G+ TT HRIFL CLIL+AK  NDSSP NKHWT YT+G
Sbjct: 64  TPTLMATSVYLNKLKSVIPKNVYGINTTRHRIFLGCLILAAKTLNDSSPWNKHWTTYTEG 123

Query: 134 MFTLRDVNLMERQLLQLFEWDLRVESEELWDNLYDLANPIRRDL 177
           +  +R+VN +ER+LL+   WD+R+ + +L D+L     PI+  L
Sbjct: 124 LLRIREVNTIERELLEYLNWDVRITTPDLIDSLSYFLGPIKEQL 167


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,673,550
Number of Sequences: 60738
Number of extensions: 576419
Number of successful extensions: 2950
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2945
Number of HSP's gapped (non-prelim): 3
length of query: 282
length of database: 30,389,216
effective HSP length: 105
effective length of query: 177
effective length of database: 24,011,726
effective search space: 4250075502
effective search space used: 4250075502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)