ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3484    suspect: LH   A     KOG3117  RNA processing and modification                                Protein involved in rRNA processing

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3484 1206847  1208031 395  
         (395 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER127w [A] KOG3117 Protein involved in rRNA processing               330   3e-90
SPAC18B11.06 [A] KOG3117 Protein involved in rRNA processing           74   5e-13

>YER127w [A] KOG3117 Protein involved in rRNA processing
          Length = 357

 Score =  330 bits (845), Expect = 3e-90
 Identities = 175/357 (49%), Positives = 239/357 (66%), Gaps = 10/357 (2%)

Query: 47  ELGTVLKTIRDSLKSCGESLDKLEEVYDDEETHPFQGSAVVGHK-----GDKLEKVSLLS 101
           EL  +LK I  SL +  ESL++L  +Y +  T     S  +            EKVSLLS
Sbjct: 3   ELNALLKDINGSLTATSESLERLSGIYSNSATDEIPESNQLHEHLFYDAKKPAEKVSLLS 62

Query: 102 LKNGXXXXXXXXXXXXXGQKLN---KEMVVDEGRVRAVEQRVVLERGVKPLEKKLGYQLD 158
           LKNG             G +L+   K+    + R R+++ RVVLERGVKPLEKKL YQLD
Sbjct: 63  LKNGSMLGYINSLLMLIGNRLDDECKDPSAMDARERSIQHRVVLERGVKPLEKKLAYQLD 122

Query: 159 KLTRAYIRLEKDVEESKKRAELQGLSDVRAXXXXXXXXXXXXXXXMQYRPNSSGMVNNTS 218
           KLTRAY+++EK+ ++++KRA L+  + V                 + YRPN+SG++N   
Sbjct: 123 KLTRAYVKMEKEYKDAEKRA-LEKSTLVNHSGNDDSEDDESSEDEIAYRPNTSGIINTNK 181

Query: 219 XXXXXXXXXXXXSTHNEEDVDDKDNVYRPPKISAVLPPKQHHFEDKFNAQEHKDKSSRSR 278
                         + EE+ D++  VY+PPKI+AVLPP+Q HFED+F+A+EHKD+S++SR
Sbjct: 182 KSSAYRVEETAKQENGEENDDNETGVYKPPKITAVLPPQQTHFEDRFDAREHKDRSNKSR 241

Query: 279 MQAMEEYLKDSSEQPEWETSIGANIVNHGRGGVKTARDTERERDVQRFEEENFTRLNPNG 338
           MQAMEEY+++SS+QP+W  SIGA+IVNHGRGG+K+ RDTE+ER V  FEE+NFTRLN   
Sbjct: 242 MQAMEEYIRESSDQPDWSASIGADIVNHGRGGIKSLRDTEKERRVTSFEEDNFTRLNIT- 300

Query: 339 SKTDKRMKKQREIMAKVNMIAGEDFSIFNSKRKLEDSTSRRGNKKSRNAWERAKKKL 395
           +K +KR +KQRE  A++N+I GEDF IF+SKRKLEDSTSRRG KK+R+AW+RA+++L
Sbjct: 301 NKAEKRKQKQRERNARMNVIGGEDFGIFSSKRKLEDSTSRRGAKKTRSAWDRAQRRL 357


>SPAC18B11.06 [A] KOG3117 Protein involved in rRNA processing
          Length = 327

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 42/299 (14%)

Query: 97  VSLLSLKNGXXXXXXXXXXXXXGQKLNKEMVVDEGRV--RAVEQRVVLERGVKPLEKKLG 154
           VSL+SLK                 KL+ E  +    V  + V+ R+ +E+ ++PLE ++ 
Sbjct: 26  VSLVSLKCQLLLSYVQKLAFLMLVKLDDESFLQHQDVVEKLVQLRIEIEK-IRPLENRIQ 84

Query: 155 YQLDKLTRAYIRLEKDVEESKKRAELQGLSDVRAXXXXXXXXXXXXXXXMQYRPN----- 209
           Y +DKL RA  R E+             +  ++                + Y+PN     
Sbjct: 85  YSVDKLLRAAGRKEE-------------IGSIKEPENNGNDKDSQDSLKLHYKPNLSEFA 131

Query: 210 --SSGMVNNTSXXXXXXXXXXXXSTHNEEDVDDKDNVYRPPKISAVLPPKQHHFEDKFNA 267
             S G  +  +                EE    KD +YRPP+I AV    +     + N 
Sbjct: 132 DDSDGPASENNVVKEDDKSSISSEDEEEELRSAKDGIYRPPRIRAVTMDSEKRTRHRPN- 190

Query: 268 QEHKDKSSRSRMQAMEEYLK-DSSEQPEWETSIGANIVNHGRGGVKTARDTERERDVQRF 326
                         ++E++  D S  P+   S+G+N+   GR      R+ ++ R+   +
Sbjct: 191 ------------HLVDEFVSSDMSSVPQSMPSVGSNLEKRGRVIHADERELQKMRERIEY 238

Query: 327 EEENFTRLNPNGSKTDKRMKKQREIMAKVNMIAGEDFSIFNSKRKLEDSTSRRGNKKSR 385
           EE N+TRL P  SK D  +KK + +  K +   GED+S+ + K   +D ++R+ +  SR
Sbjct: 239 EESNYTRL-PKLSKKD--LKKSKRV--KKHDYGGEDWSLLDRKFHDDDFSNRKLDLTSR 292


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,036,771
Number of Sequences: 60738
Number of extensions: 892657
Number of successful extensions: 2767
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2759
Number of HSP's gapped (non-prelim): 2
length of query: 395
length of database: 30,389,216
effective HSP length: 108
effective length of query: 287
effective length of database: 23,829,512
effective search space: 6839069944
effective search space used: 6839069944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)