ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3655 check: MH A KOG0345 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3655 1268901 1270688 596
(596 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFL002c [A] KOG0345 ATP-dependent RNA helicase 720 0.0
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 328 2e-89
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 305 1e-82
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 290 6e-78
7299006 [A] KOG0345 ATP-dependent RNA helicase 278 2e-74
CE03821 [A] KOG0345 ATP-dependent RNA helicase 221 2e-57
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 213 9e-55
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 211 3e-54
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 207 4e-53
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 206 1e-52
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 206 1e-52
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 204 3e-52
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 202 1e-51
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 193 7e-49
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 192 2e-48
SPAC1093.05 [A] KOG0343 RNA Helicase 191 3e-48
YJL033w [A] KOG0343 RNA Helicase 189 1e-47
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 189 1e-47
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 186 9e-47
Hs13514831 [A] KOG0343 RNA Helicase 181 4e-45
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 180 5e-45
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 179 8e-45
ECU10g1680 [A] KOG0343 RNA Helicase 177 3e-44
YHR065c [A] KOG0330 ATP-dependent RNA helicase 174 3e-43
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 174 4e-43
CE00337 [A] KOG0330 ATP-dependent RNA helicase 174 4e-43
7293348 [A] KOG0348 ATP-dependent RNA helicase 172 1e-42
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 172 1e-42
CE27553 [A] KOG0337 ATP-dependent RNA helicase 167 4e-41
At5g54910 [A] KOG0343 RNA Helicase 167 4e-41
YLL008w [A] KOG0338 ATP-dependent RNA helicase 166 1e-40
CE25231 [A] KOG0343 RNA Helicase 166 1e-40
7298752 [A] KOG0330 ATP-dependent RNA helicase 164 4e-40
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 163 8e-40
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 163 8e-40
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 163 8e-40
7293369 [A] KOG0343 RNA Helicase 162 1e-39
7296891 [A] KOG0341 DEAD-box protein abstrakt 161 2e-39
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 159 1e-38
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 159 1e-38
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 158 2e-38
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 157 3e-38
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 156 1e-37
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 155 1e-37
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 155 2e-37
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 155 2e-37
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 153 8e-37
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 152 1e-36
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 152 1e-36
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 152 1e-36
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 151 3e-36
YGL078c [A] KOG0331 ATP-dependent RNA helicase 150 4e-36
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 150 7e-36
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 150 7e-36
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 149 9e-36
CE28369 [A] KOG0335 ATP-dependent RNA helicase 149 1e-35
CE24451 [A] KOG0335 ATP-dependent RNA helicase 149 1e-35
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 149 2e-35
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 148 2e-35
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 148 2e-35
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 148 2e-35
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 3e-35
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 148 3e-35
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 146 8e-35
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 146 8e-35
CE23832 [A] KOG0341 DEAD-box protein abstrakt 146 1e-34
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 146 1e-34
YPL119c [A] KOG0335 ATP-dependent RNA helicase 145 1e-34
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 145 2e-34
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 145 2e-34
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 144 3e-34
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 144 4e-34
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 142 1e-33
At1g20920 [A] KOG0334 RNA helicase 142 1e-33
YHR169w [A] KOG0340 ATP-dependent RNA helicase 142 1e-33
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 142 1e-33
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 142 1e-33
7303950 [A] KOG0340 ATP-dependent RNA helicase 142 1e-33
YKR024c [A] KOG0348 ATP-dependent RNA helicase 142 2e-33
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 142 2e-33
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 140 4e-33
YDL160c [A] KOG0326 ATP-dependent RNA helicase 140 4e-33
SPCC10H11.01 [A] KOG0334 RNA helicase 140 4e-33
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 140 4e-33
CE09012 [A] KOG0335 ATP-dependent RNA helicase 140 7e-33
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 140 7e-33
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 139 9e-33
CE07736 [A] KOG0335 ATP-dependent RNA helicase 139 9e-33
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 139 9e-33
7295314 [A] KOG0331 ATP-dependent RNA helicase 139 9e-33
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 138 2e-32
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 138 3e-32
7304081 [A] KOG0338 ATP-dependent RNA helicase 138 3e-32
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 138 3e-32
YGL171w [A] KOG0344 ATP-dependent RNA helicase 137 4e-32
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 137 5e-32
CE25121 [A] KOG0335 ATP-dependent RNA helicase 137 6e-32
YOR204w [A] KOG0335 ATP-dependent RNA helicase 136 8e-32
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 136 8e-32
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 136 1e-31
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 136 1e-31
7299061 [A] KOG0335 ATP-dependent RNA helicase 136 1e-31
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 136 1e-31
CE22474 [A] KOG0336 ATP-dependent RNA helicase 135 2e-31
CE00839 [A] KOG0326 ATP-dependent RNA helicase 135 2e-31
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 135 2e-31
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 135 2e-31
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 134 4e-31
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 134 4e-31
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 134 4e-31
7297629 [A] KOG0326 ATP-dependent RNA helicase 134 4e-31
YOR046c [A] KOG0332 ATP-dependent RNA helicase 134 5e-31
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 134 5e-31
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 133 7e-31
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 133 9e-31
SPBC4F6.07c [A] KOG0347 RNA helicase 132 1e-30
CE18785 [A] KOG0331 ATP-dependent RNA helicase 132 1e-30
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 132 1e-30
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 132 1e-30
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 132 2e-30
YDL084w [A] KOG0329 ATP-dependent RNA helicase 131 3e-30
CE03025 [A] KOG0329 ATP-dependent RNA helicase 131 3e-30
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 131 3e-30
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 131 3e-30
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 130 6e-30
7293060 [A] KOG0334 RNA helicase 130 7e-30
7298204 [A] KOG0335 ATP-dependent RNA helicase 129 1e-29
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 129 1e-29
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 129 1e-29
7296990 [A] KOG0329 ATP-dependent RNA helicase 129 2e-29
7290853 [A] KOG0331 ATP-dependent RNA helicase 129 2e-29
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 128 2e-29
Hs7662318 [A] KOG0334 RNA helicase 128 2e-29
YBR142w [A] KOG0347 RNA helicase 128 3e-29
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 128 3e-29
At3g16840 [A] KOG0347 RNA helicase 128 3e-29
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 127 5e-29
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 127 5e-29
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 127 6e-29
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 127 6e-29
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 126 1e-28
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 125 1e-28
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 125 1e-28
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 125 2e-28
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 125 2e-28
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 124 3e-28
CE23814 [A] KOG0340 ATP-dependent RNA helicase 124 3e-28
7296646 [A] KOG0331 ATP-dependent RNA helicase 123 9e-28
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 122 1e-27
CE28485 [K] KOG4284 DEAD box protein 122 2e-27
YLR276c [A] KOG0346 RNA helicase 121 3e-27
At3g09620 [A] KOG0334 RNA helicase 120 6e-27
CE17559 [A] KOG0339 ATP-dependent RNA helicase 119 1e-26
YNL112w [A] KOG0331 ATP-dependent RNA helicase 119 1e-26
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 119 1e-26
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 119 2e-26
Hs9506931 [A] KOG0346 RNA helicase 118 2e-26
7294824 [K] KOG4284 DEAD box protein 118 2e-26
7294797 [A] KOG0339 ATP-dependent RNA helicase 118 2e-26
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 118 3e-26
CE11190 [A] KOG0347 RNA helicase 118 3e-26
7298989 [A] KOG0336 ATP-dependent RNA helicase 118 3e-26
CE27030 [A] KOG0338 ATP-dependent RNA helicase 117 4e-26
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 117 4e-26
CE06239 [A] KOG0344 ATP-dependent RNA helicase 116 8e-26
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 116 1e-25
YDL031w [A] KOG0337 ATP-dependent RNA helicase 115 1e-25
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 1e-25
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 115 2e-25
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 114 3e-25
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 114 3e-25
Hs14251212 [K] KOG4284 DEAD box protein 114 4e-25
CE28031 [A] KOG0334 RNA helicase 114 4e-25
CE27427 [A] KOG0334 RNA helicase 114 4e-25
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 114 5e-25
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 114 5e-25
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 113 9e-25
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 113 9e-25
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 113 9e-25
At4g34910 [A] KOG0346 RNA helicase 113 9e-25
CE11402 [A] KOG0334 RNA helicase 112 2e-24
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 108 3e-23
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 106 1e-22
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 105 2e-22
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 104 4e-22
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 104 4e-22
7295505 [A] KOG0346 RNA helicase 104 4e-22
SPCC1494.06c [A] KOG0346 RNA helicase 103 7e-22
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 103 1e-21
Hs9966805 [A] KOG0347 RNA helicase 102 1e-21
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 102 2e-21
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 102 2e-21
CE29052 [A] KOG0335 ATP-dependent RNA helicase 99 2e-20
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 99 2e-20
YBR237w [A] KOG0334 RNA helicase 99 2e-20
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 98 3e-20
7296165 [A] KOG0330 ATP-dependent RNA helicase 98 3e-20
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 96 2e-19
CE18221 [A] KOG0332 ATP-dependent RNA helicase 96 2e-19
CE18220 [A] KOG0332 ATP-dependent RNA helicase 96 2e-19
CE18219 [A] KOG0332 ATP-dependent RNA helicase 96 2e-19
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 95 3e-19
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 94 8e-19
7293941 [A] KOG0344 ATP-dependent RNA helicase 92 2e-18
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 92 3e-18
CE27728 [A] KOG0346 RNA helicase 91 4e-18
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 89 1e-17
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 89 2e-17
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 89 2e-17
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 87 7e-17
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 83 1e-15
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 82 2e-15
CE26264 [A] KOG0335 ATP-dependent RNA helicase 82 2e-15
CE29051 [A] KOG0335 ATP-dependent RNA helicase 72 2e-12
YGL064c [A] KOG0335 ATP-dependent RNA helicase 71 4e-12
7302399 [A] KOG0347 RNA helicase 71 4e-12
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 70 1e-11
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 70 1e-11
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 66 2e-10
CE27320 [A] KOG0335 ATP-dependent RNA helicase 65 3e-10
Hs22045464 [A] KOG0343 RNA Helicase 65 4e-10
CE15167 [A] KOG0335 ATP-dependent RNA helicase 65 4e-10
CE06825 [A] KOG0335 ATP-dependent RNA helicase 65 4e-10
7290730 [A] KOG0331 ATP-dependent RNA helicase 65 4e-10
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 61 4e-09
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 61 6e-09
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 60 9e-09
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 59 3e-08
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 59 3e-08
CE27336 [A] KOG0334 RNA helicase 55 3e-07
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 55 4e-07
Hs17474221 [A] KOG0345 ATP-dependent RNA helicase 55 4e-07
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 53 1e-06
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 52 3e-06
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 52 3e-06
CE28975 [A] KOG0335 ATP-dependent RNA helicase 51 4e-06
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 720 bits (1859), Expect = 0.0
Identities = 354/606 (58%), Positives = 459/606 (75%), Gaps = 10/606 (1%)
Query: 1 MSKSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIA 60
MSKSL WD+L + PWIRT ++ MGFETMTPVQASTIP+ +GNKDVVV+SVTGSGKT A
Sbjct: 1 MSKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAA 60
Query: 61 FVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQ 120
FVIP+LE+++KEEAN++KFKK+HFHSLII+PTREL+ QI V+ FL++YP +L+PI+ Q
Sbjct: 61 FVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQ 120
Query: 121 LLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDL 180
LLVGT+ A+VRDD+++F NRPQIL+GTPGRVLDFLQ VKT++C VV+DEAD+LLD+
Sbjct: 121 LLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDM 180
Query: 181 NFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINY 240
+F KD E IL++LPKQRRTGLFSAT+ SAG+ IFKTG+R L +NY
Sbjct: 181 SFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNY 240
Query: 241 IVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLH 300
V+ P +K NNY+FKKCIVYFPTC+SV+YFY+FI +L + N++ +++++FSLH
Sbjct: 241 CVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLH 300
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
GKLQT +R KTL +FT +L+++VLFTTDVAARGIDIPDVDLVIQLDPPT+ D+F+HRCGR
Sbjct: 301 GKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGR 360
Query: 361 TGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGV-ENLTKIFHDWILHDRA 419
TGRANR+GKA+ FLNEGREED++PF++VKNV+LEE +E+KG+ N + F +WIL DR
Sbjct: 361 TGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRD 420
Query: 420 RFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAADQIPE 479
RFD V+AYVAFIKYYS H+A+SIFR S+D++G+A YGL RLPRMPEIT+Y A + E
Sbjct: 421 RFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKYLATEKQE 480
Query: 480 ----EGWLVSPPVNLDTFAYLDKQKEKARLQELQNLKQISDXXXXXXXXXXXNMAWSDKT 535
WLV PPVN+D + Y DK++EK R + L+N+ I+D N+AWSDKT
Sbjct: 481 GIFPGNWLVDPPVNMDEYKYKDKKREKERQETLKNISLINDKKKLKSELKKKNLAWSDKT 540
Query: 536 LTXXXXXXXXXXXXXXXXXXXXXLLRG--DEESEDE-VEQDWKDLVRQNKKKKHNS--MQ 590
LT L DE +E+E +++DWK++V QNK+KK +S +Q
Sbjct: 541 LTKERKLERKEKMSLKRKAIEEELKAEELDENAEEERIKEDWKEIVLQNKRKKVSSKAIQ 600
Query: 591 GSFDDL 596
G+FDDL
Sbjct: 601 GNFDDL 606
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 328 bits (840), Expect = 2e-89
Identities = 191/533 (35%), Positives = 300/533 (55%), Gaps = 34/533 (6%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I W++ A+ + GF+ MTPVQA+ IPLF NKD+VVE+VTGSGKT+A+++P +++ + +
Sbjct: 8 IDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRD 67
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNL---YPIRSQLLVGTSSASV 130
+ ++ +LI++PTRELA+QI +V ++ L Y PD+L + + + +G ++
Sbjct: 68 TD-----ETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIG-GKGTL 121
Query: 131 RDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
+D+ SF + P +++GTPGR+ + L +++ + ++LDEAD L+D+ FQ+ +++I+
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 191 KMLPKQRRTGLFSATIESAGAQIFK-TGMRXXXXXXXXXXXXXX-----XXLSINYIVIP 244
LPKQRRTGLFSAT+ + K G+R L+I +VIP
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIP 239
Query: 245 PKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQ 304
P K ++K IV+F +C SV YF + K ++ +LHG+
Sbjct: 240 PIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKL------PFEIVALHGQQV 293
Query: 305 TQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRA 364
+R + + F + VLFTTD+A+RG+DIP+VD V+QLDPP D F HRCGR GRA
Sbjct: 294 QSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA 353
Query: 365 NRIGKALVFLNEGREEDYVPFLEVKNVKLEE-----ESVELKGVENLTKIFHDWILHDRA 419
R G A+V LN+GREE+Y L V+ V + E+++L ++ LT + DR
Sbjct: 354 GRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSKDRD 413
Query: 420 RFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAADQIPE 479
+D +RA+V+ ++ Y+KH AS IFR +D +A Y LL LP+MPE+ D
Sbjct: 414 LYDKGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKMPEL----KDTEIS 469
Query: 480 EGWLVSPPVNLDTFAYLDKQKEKARLQELQNLKQISDXXXXXXXXXXXNMAWS 532
E ++ T Y D+ +E+AR + L+ K ++ N AWS
Sbjct: 470 ENIFKKFDIDYATIPYRDQVREQARRRRLEVEK--TEPKKLARPAKIKNEAWS 520
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 305 bits (782), Expect = 1e-82
Identities = 188/505 (37%), Positives = 273/505 (53%), Gaps = 21/505 (4%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL 66
+ +LK + I A++ GFE TPVQA TIP +KDVVV++ TGSGKT+AF++P +
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 67 ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
E I +NS K +IISPTREL++QIH V E F+ P+ + S LLVG
Sbjct: 76 E--IIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN----VNSVLLVG-- 127
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKD 185
V D+N+ + +L+GTPGR+ D +++ + + ++LDEAD+LLD+ FQK
Sbjct: 128 GREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQ 187
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXX--XXXXXXXXXXXXLSINYIVI 243
V I+ LPKQRRTGLFSAT A A + K G+R L Y+
Sbjct: 188 VNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKC 247
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
K + KK +V+F TC V Y+ ++ + L I FS HGK+
Sbjct: 248 EADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSIS----FFSTHGKM 303
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ R L SFT + VL TDVAARG+DIP +D V+Q DPP D D+FIHR GRT R
Sbjct: 304 DQKGRDTALASFTE-ASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTAR 362
Query: 364 ANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDH 423
R G+A+VFL +E DYV F+ ++ V L+E + ++ I + DRA +
Sbjct: 363 MERQGRAIVFLMP-KETDYVEFMRIRRVPLQERKCS-ENASDVIPIIRSLAIKDRAVLEK 420
Query: 424 SVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAADQIPEEGWL 483
++A+V+F++ Y +H S IF + ++ +A YG+L P + E+ + D+I G+
Sbjct: 421 GLQAFVSFVRAYKEHHCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQ---DRIGIVGFT 477
Query: 484 VSPPVNLDTFAYLDKQKEKARLQEL 508
+ + Y +K +EK R Q L
Sbjct: 478 PVQGITFEDIKYKNKSREKQRQQNL 502
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 290 bits (741), Expect = 6e-78
Identities = 186/519 (35%), Positives = 277/519 (52%), Gaps = 30/519 (5%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL 66
+ DL+ + I A+ FE TPVQA+TIPL KDV V++ TGSGKT+AFV+P++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 67 ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
E I + S K +IISPTREL++QI++V + F+ L + S LLVG
Sbjct: 76 E--ILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVS----TLANVNSVLLVG-- 127
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKT-ASCGTVVLDEADKLLDLNFQKD 185
V+ D+ + +L+GTPGR+ D +++ + + ++LDEAD+LL++ FQ+
Sbjct: 128 GREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQ 187
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRX-----------XXXXXXXXXXXXXX 234
V I+ LPKQRRTGLFSAT ++ K G+R
Sbjct: 188 VNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPS 247
Query: 235 XLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL 294
L + Y+ K KK IV+F TC SV Y+ ++ + L I
Sbjct: 248 GLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSIS--- 304
Query: 295 KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIF 354
L +HG ++ +R K L SFT + A+L TDVAARG+DIP +D V+Q DPP D ++F
Sbjct: 305 -LIPIHGDMKQNARDKALASFTKASSGALL-CTDVAARGLDIPGIDYVVQYDPPQDPNMF 362
Query: 355 IHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWI 414
HR GRT R R G+A+VFL +EE YV F+ ++ V LEE + ++ I
Sbjct: 363 NHRAGRTARLGRQGRAIVFLLP-KEEAYVEFMRIRRVPLEERKCS-EDASDVIPIIRSAA 420
Query: 415 LHDRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAA 474
+ DRA + ++A+V+F++ Y +H S IFR+ ++ +A YGLL LP M E+ ++
Sbjct: 421 MKDRAVMEKGLKAFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQH-- 478
Query: 475 DQIPEEGWLVSPPVNLDTFAYLDKQKEKARLQELQNLKQ 513
++ EG+ V + + DK +EK R Q LQ K+
Sbjct: 479 -RLSSEGFTPVEGVKFEEIKFKDKYREKQRQQNLQVRKE 516
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 278 bits (711), Expect = 2e-74
Identities = 185/529 (34%), Positives = 281/529 (52%), Gaps = 42/529 (7%)
Query: 7 WDDL-KCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
W L K + + ++S GF+ MTPVQ + IPL KDV E+VTGSGKT+AF++P+
Sbjct: 6 WSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPM 65
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
LE +++ + +L+ISPTRELA QI +V+ FL++ ++L + QL+VG
Sbjct: 66 LE-ILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEH--EDLEHLNQQLIVGG 122
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN------VKTASCGTVVLDEADKLLD 179
+S + +DI + P ILV TPGR+ D Q+ + S +VLDEAD+LLD
Sbjct: 123 NS--IEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLD 180
Query: 180 LNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN 239
L F+ V IL LP+QRRTGLFSAT + + + G+R +
Sbjct: 181 LGFKTSVNNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQ 240
Query: 240 --YIVIPPKDKXXXXXXXXNNYR--FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK 295
Y ++ P+ K ++ K +V+FPTC V Y+ + L +
Sbjct: 241 NFYRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTV----- 295
Query: 296 LFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFI 355
+HGK++ + R ++ F N AVL TDV ARG+D+P+++ V+Q DPP+ A F+
Sbjct: 296 -LGIHGKMKNK-RANVVEKFR-NTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFV 352
Query: 356 HRCGRTGRANRIGKALVFLNEGREEDYVPFLEV-KNVKL--------EEESVELKGVENL 406
HR GRT R G ALVFL E+ YV FL++ + V+L E+ E K + +
Sbjct: 353 HRVGRTARQGNEGNALVFLLPS-EDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAV 411
Query: 407 TKIFHDWILHDRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRM 466
H D+ +D +RA+V+ ++ Y+KH S+I R +D +A YGLL+LPRM
Sbjct: 412 LDQLHRLQAADKGVYDKGMRAFVSHVRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRM 471
Query: 467 PEITRYAADQIPEEGWLVSP--PVNLDTFAYLDKQKEKARLQELQNLKQ 513
PE+ Y + G V+P V+L Y + QKE+ R ++++ +Q
Sbjct: 472 PELKNY------QGGGYVAPAFEVDLSKLTYKNAQKEQVRQKKMETYEQ 514
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 221 bits (564), Expect = 2e-57
Identities = 152/455 (33%), Positives = 229/455 (49%), Gaps = 30/455 (6%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHS 86
+++ T VQ + DVVVES TGSGKT+AFV+P++ + +AK + + +
Sbjct: 29 YKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMI-----QNAKLQPADIGA 83
Query: 87 LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILV 146
LI+SP+REL SQI VI+ F + + + T V +I F + ILV
Sbjct: 84 LILSPSRELCSQIVSVIQPFAE-------KLNLTVETVTGGQKVDKNIKMFKNKNVNILV 136
Query: 147 GTPGRVLDFLQ--KTNV--KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLF 202
TPGR+ +Q KT + K + +V+DEAD+ ++ F+ + IL +PKQRRTGLF
Sbjct: 137 ATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLF 196
Query: 203 SATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN--YIVIPPKDKXXXXXXXXNNYR 260
SAT + G+R ++ Y+ +K
Sbjct: 197 SATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRT 256
Query: 261 FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLT 320
KK +++FP+C SV YFY K LF++HGK R + +F S+ T
Sbjct: 257 DKKILIFFPSCNSVRYFY------KIFERCLGKRPLFAVHGKCSNPHRASQIKAF-SDST 309
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
+ V+ +TDV ARGIDI D+D VIQ D P + F+HR GRT R R G AL+ + +
Sbjct: 310 NGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILI-ASEQL 368
Query: 381 DYVPFLE-VKNVKLEEESVELKGVENLTKIFHDWI---LHDRARFDHSVRAYVAFIKYYS 436
YV FL+ + VKL+E V ++ I + DRA + RA+V+ ++ Y+
Sbjct: 369 AYVNFLDNHEKVKLDEIKVPTNNSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYA 428
Query: 437 KHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITR 471
KH I ++ +G+AN Y LLRLP+M E+++
Sbjct: 429 KHDCHLICSLDDLNVVGLANSYALLRLPKMRELSQ 463
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 213 bits (541), Expect = 9e-55
Identities = 145/455 (31%), Positives = 229/455 (49%), Gaps = 41/455 (9%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
++ IE GF MT VQ IP KDVVV+S TG+GKT+AF+ PIL + +
Sbjct: 15 LKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRG- 73
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137
+ +++I+PTRELA QI +V L+ ++ + +G S+ +D
Sbjct: 74 ---RPGVTAVVITPTRELALQIREVA---------GLFDVKCECFIG--GMSIEEDYKRM 119
Query: 138 TDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
+ I VGTPGR+L+ + K K +S +VLDEADKLL F++ + +L LP+ R
Sbjct: 120 KEEF-SIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNR 178
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
TGLFSAT + ++ + +R +++ YIV+ P +K
Sbjct: 179 VTGLFSATRNDSVDKLSRVFLR---NPVSINVGNNEMPVALEYIVVSPMEKLLVLMDIVT 235
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
++CIV+F TC V +F ++ N+ + +HGK+ R + + F
Sbjct: 236 G---RRCIVFFATCSEVDFFSGLVSRAGFGNICK-------IHGKISQDERNRVYEEFFQ 285
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
D +LF TDVAARGID VDLV+ D P + +HR GRT R G++++F+
Sbjct: 286 R--DGLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMP- 342
Query: 378 REEDYVPFLEVKNVKLEEESVELK---GVENLTKIFHDWILHDRARFDHSVRAYVAFIKY 434
E YV FL++K + E S +K +++ + +L SV+A+V++I+
Sbjct: 343 NERAYVEFLKLKGIPAVESSYRMKSSLSYQDIKSMISPELL------GLSVKAFVSYIRS 396
Query: 435 YSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEI 469
Y +H S I + +DF +A + L R+P M E+
Sbjct: 397 YKEHFVSYILDYKGLDFDSLAELFFLERIPGMAEL 431
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 211 bits (537), Expect = 3e-54
Identities = 155/470 (32%), Positives = 236/470 (49%), Gaps = 34/470 (7%)
Query: 4 SLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFV 62
++++D L Q I AI+ MGF+ MT +QA +I PL G KDV+ + TGSGKT+AF+
Sbjct: 88 NVTFDSLDLSEQTSI--AIKEMGFQYMTQIQAGSIQPLLEG-KDVLGAARTGSGKTLAFL 144
Query: 63 IPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
IP +E L KE + ++ ++I PTRELA Q +V E+ LK++ + S ++
Sbjct: 145 IPAVELLFKERFSP----RNGTGVIVICPTRELAIQTKNVAEELLKHHSQTV----SMVI 196
Query: 123 VGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNV---KTASCGTVVLDEADKLLD 179
G + S I S ++ +++ TPGR+LD LQ T K C +V+DEAD++L+
Sbjct: 197 GGNNRRSEAQRIASGSN----LVIATPGRLLDHLQNTKAFIYKHLKC--LVIDEADRILE 250
Query: 180 LNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRX--XXXXXXXXXXXXXXXLS 237
NF++D+ ILK+LPK R+T LFSAT S + + + L
Sbjct: 251 ENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLE 310
Query: 238 INYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLF 297
Y V+P K + KK +V+F TC SV + H + + + D+ +
Sbjct: 311 QGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQF------HTEIMKI--SDVDVS 362
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
+HG + R KT F +L TDVAARG+DIP VD +IQ DPP +IHR
Sbjct: 363 DIHGGMDQNRRTKTFFDFMK-AKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHR 421
Query: 358 CGRTGRANRI-GKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILH 416
GRT R GKAL+ L E ++ +L+ V ++E K + N+ +
Sbjct: 422 VGRTARGEGAKGKALLVLIP-EELQFIRYLKAAKVPVKELEFNEKRLSNVQSALEKCVAK 480
Query: 417 DRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRM 466
D + AY A++ Y+ H+ IF H +D + VA + P++
Sbjct: 481 DYNLNKLAKDAYRAYLSAYNSHSLKDIFNVHRLDLLAVAESFCFSSPPKV 530
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 207 bits (527), Expect = 4e-53
Identities = 155/484 (32%), Positives = 244/484 (50%), Gaps = 43/484 (8%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL 66
+++LK QP ++ AIE MGF TMT VQA TIP +DV+ + TGSGKT+AF+IP +
Sbjct: 44 FEELKLS-QPTLK-AIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 101
Query: 67 ERLIKEEANSAKFKKSHFHSLI-ISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
E L +S KFK + +I I+PTRELA QI V + ++++ +++G
Sbjct: 102 ELL-----HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTF-----GIVIG- 150
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQK 184
A+ R + +L+ TPGR+LD LQ T + +++DEAD++L++ F+
Sbjct: 151 -GANRRQEAEKLMKG-VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFED 208
Query: 185 DVETILKMLPKQ-RRTGLFSATIESAGAQIFKTGMR---XXXXXXXXXXXXXXXXLSINY 240
++ I+K+LP + R++ LFSAT + + + +R L Y
Sbjct: 209 EMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGY 268
Query: 241 IVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLH 300
+V + + KK IV+ +C SV Y+ +N++ DL + LH
Sbjct: 269 VVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYI--------DLPVLELH 320
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
GK + Q R T F N +L TDVAARG+DIP VD +IQ DPP D +IHR GR
Sbjct: 321 GKQKQQKRTNTFFEFC-NAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGR 379
Query: 361 TGRANR-IGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTK-----IFHDWI 414
T R + GK+L+FL E ++ +L+ V L E + N+ I ++
Sbjct: 380 TARGTKGKGKSLMFLTP-NELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYY 438
Query: 415 LHDRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAA 474
LH A+ Y ++++ Y+ H+ ++++ +D VA YG +P IT A+
Sbjct: 439 LHQTAK-----DGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYG-FPVPPKVNITIGAS 492
Query: 475 DQIP 478
+ P
Sbjct: 493 GKTP 496
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 206 bits (523), Expect = 1e-52
Identities = 146/456 (32%), Positives = 229/456 (50%), Gaps = 30/456 (6%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I+ AI+ MGFETMT +Q +IP +DV+ + TGSGKT+AF+IP +E L +
Sbjct: 100 IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY-----AL 154
Query: 78 KFK-KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINS 136
KFK ++ +IISPTRELA QI V ++ LKY+ +++G A+ R + +
Sbjct: 155 KFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTF-----GIVIG--GANRRAEADK 207
Query: 137 FTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+LV TPGR+LD LQ T + ++V+DEAD++L++ F+ ++ I+K+LP
Sbjct: 208 LVKG-VNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 196 Q-RRTGLFSATIESAGAQIFKTGMR---XXXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
+ R+T LFSAT + + + ++ L Y+V+ +
Sbjct: 267 ENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLL 326
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
KK IV+ +C SV Y +N++ DL + LHGK + Q R T
Sbjct: 327 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYI--------DLPVLDLHGKQKQQRRTNT 378
Query: 312 LDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANR-IGKA 370
F N +L T+VAARG+DIP VD ++Q DPP D +IHR GRT R + GK+
Sbjct: 379 FFEFC-NAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKS 437
Query: 371 LVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVA 430
L+FL E ++ +L+ V L E V N+ + + + Y +
Sbjct: 438 LMFLAPS-ELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRS 496
Query: 431 FIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRM 466
+++ Y+ ++ SIF + +D VA +G P +
Sbjct: 497 YLQAYASYSLKSIFDINKLDLAKVAKSFGFAHPPNV 532
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 206 bits (523), Expect = 1e-52
Identities = 149/449 (33%), Positives = 227/449 (50%), Gaps = 37/449 (8%)
Query: 21 AIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
A++ +GF TMT +QA +I PL G KDV+ + TGSGKT+AF++P +E L K
Sbjct: 82 AVQGLGFTTMTEIQAKSIDPLLEG-KDVLASAKTGSGKTLAFLLPAIELLHKLNW----- 135
Query: 80 KKSHFHS--LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137
K H + +I+SPTREL+ Q + V+ + L+ NL L++G S+ S D +
Sbjct: 136 -KQHNGTGVIIVSPTRELSMQTYGVLSELLE--GSNL---TYGLVMGGSNRSAEKDKLA- 188
Query: 138 TDNRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADKLLDLNFQKDVETILKMLP 194
ILV TPGR+LD LQ T+ V+ C +++DEAD++LD+ F+ +++ +L+ LP
Sbjct: 189 --KGVSILVATPGRLLDHLQNTDNFLVRNMKC--LIIDEADRILDIGFEIEMQQVLRHLP 244
Query: 195 KQRRTGLFSATIESAGAQIFKTGMRXX---XXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
KQR++ LFSAT ++ K + L YIV P +
Sbjct: 245 KQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLL 304
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
+ KK +V+F +C SV + + +N++ D+ S+HGK + Q R T
Sbjct: 305 LFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYI--------DIPCMSIHGKQKQQKRTTT 356
Query: 312 LDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR-ANRIGKA 370
F T +L TDVAARG+DIP VD ++Q DP + +IHR GRT R N GKA
Sbjct: 357 FFQFCQAET-GILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKA 415
Query: 371 LVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVA 430
L+ L E ++ +L+ V L E V N+ + I + + AY
Sbjct: 416 LLVLRP-EELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEAYKC 474
Query: 431 FIKYYSKHTASSIFRFHSMDFIGVANFYG 459
+++ Y H+ IF +MD V+ +G
Sbjct: 475 YLRAYDSHSLKDIFDVTNMDLTAVSKSFG 503
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 204 bits (519), Expect = 3e-52
Identities = 145/452 (32%), Positives = 230/452 (50%), Gaps = 43/452 (9%)
Query: 21 AIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
AI+ MGF MT +Q +I PL G +D++ + TGSGKT+AF+IP +E ++K +
Sbjct: 193 AIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMT--- 248
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
++ LI+SPTRELA Q V+++ + ++ L++G S+ S
Sbjct: 249 -RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTY-----GLIMGGSNRSAEAQK---LG 299
Query: 140 NRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
N I+V TPGR+LD +Q T K C +V+DEAD++LD+ F+++++ I+K+LP +
Sbjct: 300 NGINIIVATPGRLLDHMQNTPGFMYKNLQC--LVIDEADRILDVGFEEELKQIIKLLPTR 357
Query: 197 RRTGLFSATIESAGAQIFKTGMRXX---XXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
R+T LFSAT + + ++ L Y+V P + +
Sbjct: 358 RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLF 417
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLD 313
R KK +V+F +C+SV Y Y +N++ DL + ++HGK + R T
Sbjct: 418 TFLKKNRKKKLMVFFSSCMSVKYHYELLNYI--------DLPVLAIHGKQKQNKRTTTFF 469
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRA-NRIGKALV 372
F N L TDVAARG+DIP+VD ++Q DPP D +IHR GRT R N G AL+
Sbjct: 470 QFC-NADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALL 528
Query: 373 FLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTK-----IFHDWILHDRARFDHSVRA 427
L E ++ +L+ V L E + ++ I ++ LH A+ A
Sbjct: 529 ILRP-EELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQ-----EA 582
Query: 428 YVAFIKYYSKHTASSIFRFHSMDFIGVANFYG 459
Y ++I+ Y H+ IF ++++ VA +G
Sbjct: 583 YKSYIRAYDSHSLKQIFNVNNLNLPQVALSFG 614
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 202 bits (514), Expect = 1e-51
Identities = 143/471 (30%), Positives = 232/471 (48%), Gaps = 33/471 (7%)
Query: 2 SKSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIA 60
S S+ LK + AI+ MGF MT +Q+ ++ PL G +D+V + TGSGKT+A
Sbjct: 165 SDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKG-RDLVGAAQTGSGKTLA 223
Query: 61 FVIPILERLIKEEANSAKFK-KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRS 119
F+IP +E + N +F ++ +IISPTREL+ Q V+++ + ++
Sbjct: 224 FLIPAVELI-----NKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTY----- 273
Query: 120 QLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADK 176
L++G S+ V + N ILV TPGR+LD LQ + K C +++DE D+
Sbjct: 274 GLVMGGSNRQVESEKLGKGIN---ILVATPGRLLDHLQNSPDFLYKNLQC--LIIDEVDR 328
Query: 177 LLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXX---XXXXXXXXXXXX 233
+L++ F+++++ I+ +LPK+R+T LFSAT + + K ++
Sbjct: 329 ILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATV 388
Query: 234 XXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDD 293
L YIV P + + R KK +V+F +C+SV Y + N++ D
Sbjct: 389 DGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYI--------D 440
Query: 294 LKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADI 353
L + S+HGK + R T F N +L TDVAARG+DIP VD ++Q DPP D
Sbjct: 441 LPVTSIHGKQKQTKRTTTFFQFC-NAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPRE 499
Query: 354 FIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDW 413
+IHR GRT R + + L E ++ +L+ V L E + + ++
Sbjct: 500 YIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQLEKL 559
Query: 414 ILHDRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLP 464
I + + A+ ++++ Y H IF +++D VA +G L P
Sbjct: 560 IAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPP 610
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 193 bits (490), Expect = 7e-49
Identities = 137/452 (30%), Positives = 218/452 (47%), Gaps = 29/452 (6%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
+I+ MGF MT +QA IP +DV+ + TGSGKT+AF+IP +E L + KF
Sbjct: 168 SIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYR-----VKFT 222
Query: 81 -KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
++ L+I PTRELA Q + V ++ LKY+ + + T + + +N
Sbjct: 223 PRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVN---- 278
Query: 140 NRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRR 198
+LV TPGR+LD L+ TN + +V+DEAD++L+ NF++D++ IL +LPK R+
Sbjct: 279 ----LLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQ 334
Query: 199 TGLFSATIESAGAQIFKTGMRX--XXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXX 256
T LFSAT + + + + L Y V+P +
Sbjct: 335 TSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFL 394
Query: 257 NNYRFKKCI-VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
++ KK I V+F TC S + ++K + G + R T F
Sbjct: 395 KRFQGKKKIMVFFSTCKSTKFHAELFRYIK--------FDCLEIRGGIDQNKRTPTFLQF 446
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI-GKALVFL 374
T +L T+VAARG+D P VD ++Q DPP + +IHR GRT R GKAL+ L
Sbjct: 447 IKAET-GILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVL 505
Query: 375 NEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKY 434
+E ++ +L+ + +EE E K + ++ + I + A + + AY +I
Sbjct: 506 TP-QELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISG 564
Query: 435 YSKHTASSIFRFHSMDFIGVANFYGLLRLPRM 466
Y H+ +F H ++ VA +G P++
Sbjct: 565 YDSHSMKDVFNVHQLNLTEVATSFGFSDPPKV 596
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 192 bits (487), Expect = 2e-48
Identities = 118/312 (37%), Positives = 170/312 (53%), Gaps = 28/312 (8%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW+ L + P + A+ +GF MTPVQ++TIPLF NKDV E+VTGSGKT+AFVIPI
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
LE L++ E K KKS ++II+PTRELA QI +V+ F K++P+ SQ+L
Sbjct: 68 LEILLRRE---EKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPE-----FSQIL-WI 118
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQK--TNVKTASC----GTVVLDEADKLLD 179
+ +D+ F I+V TPGR+ D ++ + ASC +VLDEAD+LLD
Sbjct: 119 GGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLD 178
Query: 180 LNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMR-------XXXXXXXXXXXXX 232
+ F+ + TIL+ LPKQRRTGLFSAT + + G+R
Sbjct: 179 MGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKT 238
Query: 233 XXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQD 292
L Y+V +K N++ +K +V+F TC V Y+ K L ++
Sbjct: 239 PSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYG------KALEVLVK 292
Query: 293 DLKLFSLHGKLQ 304
+K+ +HGK++
Sbjct: 293 GVKIMCIHGKMK 304
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 191 bits (485), Expect = 3e-48
Identities = 135/455 (29%), Positives = 224/455 (48%), Gaps = 27/455 (5%)
Query: 19 RTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAK 78
++A+++ F T+T +Q IP +D++ + TGSGKT+AF++P++E L +++ S
Sbjct: 51 KSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL- 109
Query: 79 FKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFT 138
+L+ISPTRELA Q + + L+ + L++G ++ + S
Sbjct: 110 ---DGLGALVISPTRELAIQTFETLVKI-----GRLHSFSAGLIIGGNNYKEEKERLS-- 159
Query: 139 DNRPQILVGTPGRVLDFL-QKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
R ILV TPGR+L + Q N T+ ++LDEAD++LD+ F+ ++ I+ LP R
Sbjct: 160 --RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR 217
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN--YIVIPPKDKXXXXXXX 255
+T LFSAT + + + ++ ++N Y+ +P +K
Sbjct: 218 QTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGF 277
Query: 256 XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
+ K IV+ +C V + Y ++ + L LHGK + +R + F
Sbjct: 278 IRTHLKFKTIVFLSSCKQVRFVYETFRRMRP------GISLLHLHGKQKQTTRTEVTAKF 331
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
TS+ VLF TD+ ARG+D P VD VIQLD P D D +IHR GRT R NR G AL+ L
Sbjct: 332 TSS-RHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLL 390
Query: 376 EGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKYY 435
EE ++ LE K + +E +V+ ++ + D +A++++++
Sbjct: 391 PS-EEAFLKRLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSI 449
Query: 436 SKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEIT 470
+F+ +D + V F L LP P+IT
Sbjct: 450 YLQKDKDVFQ---LDKLPVEAFADSLGLPGTPKIT 481
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 189 bits (480), Expect = 1e-47
Identities = 142/495 (28%), Positives = 235/495 (46%), Gaps = 35/495 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+ F +T +QA +IP+ DV+ + TGSGKT+AF++P++E+L +E+
Sbjct: 56 LRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEF---- 111
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LIISPTRELA QI++V+ + + L++G V+ ++ + R
Sbjct: 112 DGLGALIISPTRELAMQIYEVLTKIGSHTS-----FSAGLVIG--GKDVKFELERIS--R 162
Query: 142 PQILVGTPGRVLDFL-QKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
IL+GTPGR+L L Q + T++ +VLDEAD+ LD+ F+K ++ I+ L R+T
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL 222
Query: 201 LFSATIESAGAQI-------FKT-GMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
LFSAT + A + +KT G L YI +P DK
Sbjct: 223 LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282
Query: 253 XXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312
++ K IV+ + V + Y + +Q + L LHG+ + ++R +TL
Sbjct: 283 FSFIKSHLKCKMIVFLSSSKQVHFVY------ETFRKMQPGISLMHLHGRQKQRARTETL 336
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
D F + LF TDV ARGID P VD V+Q+D P D D +IHR GR R + GK+L+
Sbjct: 337 DKF-NRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLI 395
Query: 373 FLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFI 432
L +E ++ L + ++ + +++ +++ + D +A+++++
Sbjct: 396 MLTPQEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFKDPELKYLGQKAFISYV 455
Query: 433 KYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAADQIPEEGWLVSPPVNLDT 492
+ +F+F D + F L LP P+I I + + P L
Sbjct: 456 RSIYVQKDKQVFKF---DELPTEEFAYSLGLPGAPKIKMKGMKTIEQAKERKNAPRQL-- 510
Query: 493 FAYLDKQKEKARLQE 507
A+L K E + E
Sbjct: 511 -AFLSKANEDGEVIE 524
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 189 bits (479), Expect = 1e-47
Identities = 149/503 (29%), Positives = 223/503 (43%), Gaps = 111/503 (22%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL 66
+ +LK + I A++ GFE TPVQA TIP +KDVVV++ TGSGKT+AF++P +
Sbjct: 17 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
Query: 67 ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
E I +NS K +IISPTREL++QIH V R+ L
Sbjct: 77 E--IIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV--------------ARAVRLDFAK 120
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKD 185
V D+N+ + +L+GTPGR+ D +++ + + ++LDEAD+LLD+ FQK
Sbjct: 121 CREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQ 180
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
V I+ LPKQRRTGLFSAT A A + K G+R Y+
Sbjct: 181 VNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRN------------------PYLKCEA 222
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQT 305
K + KK +V+F TC V Y+ I+ + L + F HGK+
Sbjct: 223 DQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLK----SISFFPTHGKMDQ 278
Query: 306 QSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRAN 365
+ R L SFT + VL TDVAARG+DIP +
Sbjct: 279 KGRDTALASFT-EASSGVLLCTDVAARGLDIPGI-------------------------- 311
Query: 366 RIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSV 425
+ ++++ +++ V KG++ F V
Sbjct: 312 --------------------VYIRSLAIKDREVLEKGLK---------------AFVSFV 336
Query: 426 RAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRYAADQIPEEGWLVS 485
RAY +H S IF + ++ +A YG+L P + E+ + D+I G+
Sbjct: 337 RAY-------KEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQ---DRIGIVGFTPV 386
Query: 486 PPVNLDTFAYLDKQKEKARLQEL 508
+ + + +K +EK R Q L
Sbjct: 387 QGITFEDIKFKNKSREKQRQQNL 409
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 186 bits (472), Expect = 9e-47
Identities = 126/389 (32%), Positives = 196/389 (49%), Gaps = 36/389 (9%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
A E +GF+T TP+Q IP+ +DV+ + TGSGKT AF +P+++ L
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP------- 112
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
S F +++++PTRELA QI + E +RS ++VG + S
Sbjct: 113 -SPFFAVVLAPTRELAYQISEQFEAI-----GGSIGVRSVVIVGGMDMVTQAVALS---K 163
Query: 141 RPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
+P +LV TPGR++D L+ T + +++DEAD+LLD++F ++ ILK++P +RRT
Sbjct: 164 KPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRT 223
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNY 259
LFSAT+ S ++ + + L Y+ P K K N
Sbjct: 224 LLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNEL 283
Query: 260 RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL--KLFSLHGKLQTQSRMKTLDSFTS 317
I++ T +N + L ++ L LHG+L +R+ L+ F S
Sbjct: 284 AGNSIIIFART----------VNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKS 333
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
+ L TDVAARG+DIP VD+VI D PTD+ +IHR GRT RA R GK++ +
Sbjct: 334 GAR-STLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT-- 390
Query: 378 REEDYVPFLEVK---NVKLEEESVELKGV 403
+ D PFL ++ K++E ++ +GV
Sbjct: 391 -QYDLEPFLRIEATIGKKMQEYEIDKEGV 418
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 181 bits (458), Expect = 4e-45
Identities = 139/472 (29%), Positives = 221/472 (46%), Gaps = 35/472 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
++ + +T +Q TI L KDV+ + TGSGKT+AF++P+LE L + + S
Sbjct: 84 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTST---- 139
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
LIISPTRELA Q +V+ K + + L++G + N
Sbjct: 140 DGLGVLIISPTRELAYQTFEVLRKVGKNHD-----FSAGLIIGGKDLKHEAE----RINN 190
Query: 142 PQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
ILV TPGR+L + +T + +VLDEAD++LD+ F + +++ LPK+R+T
Sbjct: 191 INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL 250
Query: 201 LFSATIESAGAQIFKTGMRXXXXX--XXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNN 258
LFSAT + + + ++ L NYIV + K +
Sbjct: 251 LFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRS 310
Query: 259 YRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSN 318
+ KK IV+F +C V Y Y L+ + + +LHG+ Q RM+ + F
Sbjct: 311 HLKKKSIVFFSSCKEVQYLYRVFCRLRP------GVSILALHGRQQQMRRMEVYNEFVRK 364
Query: 319 LTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGR 378
AVLF TD+AARG+D P V+ V+Q D P DA+ +IHR GRT R G+AL+ L
Sbjct: 365 RA-AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPS- 422
Query: 379 EEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKYYSKH 438
E+ V L K V ++E + + + ++ K + D+ + + R +V++++
Sbjct: 423 EKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLM 482
Query: 439 TASSIFRFHSMDFIGVANFYGLLRLPRM-----------PEITRYAADQIPE 479
+F + A GL PR+ E+ R AD++ E
Sbjct: 483 KDKEVFDVSKLPIPEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIE 534
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 180 bits (457), Expect = 5e-45
Identities = 131/433 (30%), Positives = 207/433 (47%), Gaps = 33/433 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P AI+ GFETMT VQ +T+P+ KDV+ ++ TG+GKT+AF++P +E +IK
Sbjct: 366 LSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSP 425
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
S ++ L++ PTRELASQ LKY+P I Q+++G + +
Sbjct: 426 PASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPS----IGVQVVIG--GTKLPTE 479
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADKLLDLNFQKDVETIL 190
N QILV TPGR+ D ++ T+ + +VLDEAD LLD+ F++D+E I+
Sbjct: 480 QRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERII 539
Query: 191 KMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXX--XXXXXXXXXXLSINYIVIPPKDK 248
+PKQR+T LFSAT+ QI ++ +I D+
Sbjct: 540 AAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDR 599
Query: 249 XXX------XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGK 302
+N +K ++ F T VT A + L Q L + +H +
Sbjct: 600 HFSLLHVLLKEHIADNVDYK--VIIFCTTAMVTRLVADL-------LSQLSLNVREIHSR 650
Query: 303 LQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTG 362
R + D F + +L T+DV+ARG+D PDV LV+Q+ P+D + +IHR GRTG
Sbjct: 651 KPQSYRTRVSDEFRKSKA-IILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTG 709
Query: 363 RANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFD 422
R + G+ ++ L E ++ K ++ + V+ + K +
Sbjct: 710 RKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGL------SQVEMK 763
Query: 423 HSVRAYVAFIKYY 435
+ AY A++ YY
Sbjct: 764 NKEAAYQAWLGYY 776
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 179 bits (455), Expect = 8e-45
Identities = 135/434 (31%), Positives = 213/434 (48%), Gaps = 33/434 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P AI+ G+ETMT VQ +T+P+ KDV+ ++ TG+GKT+AF++P +E ++K
Sbjct: 61 LSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
S K+ +L+I PTRELA+Q LKY+P I Q+++G + +
Sbjct: 121 PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPS----IGVQVVIGGTRLGLEQ- 175
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKT---NVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
N QILV TPGR+ D ++ T + +VLDEAD LLD+ F+KD+E I+
Sbjct: 176 -KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERII 234
Query: 191 KMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXX-XXXXXXXXXLSINYI-VIPPKDK 248
+PK+R+T LFSAT+ QI +R + + +I D+
Sbjct: 235 SAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDR 294
Query: 249 XXXXXXX------XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGK 302
N +K ++ F T VT A + L ELN L + +H +
Sbjct: 295 HFSLLYTLLREHIMGNVDYK--VIVFCTTAMVTKLVADL--LGELN-----LNVREIHSR 345
Query: 303 LQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTG 362
R + + F + +L T+DV+ARG+D PDV LV+Q+ P D + +IHR GRTG
Sbjct: 346 KPQSYRTRVSNEFRKS-KGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTG 404
Query: 363 RANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFD 422
R + G+ ++ L E ++ K S++ + V+ + K + H R
Sbjct: 405 RKGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSIDPETVKKVQKA----LCHVEMR-- 458
Query: 423 HSVRAYVAFIKYYS 436
+ AY A++ YY+
Sbjct: 459 NKEAAYQAWLGYYN 472
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 177 bits (450), Expect = 3e-44
Identities = 126/408 (30%), Positives = 206/408 (49%), Gaps = 27/408 (6%)
Query: 3 KSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFV 62
+ + ++DLK I I + GF +M VQ IP+ D++ S TG+GKT+AF+
Sbjct: 2 RPMKFEDLK--IDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFL 59
Query: 63 IPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
+P L+RL+ L+I+PTRELA QI DV+ KY + L
Sbjct: 60 VPTLQRLVSLGWGGG----DGLGCLVITPTRELALQIFDVLSRIAKY---------TVLS 106
Query: 123 VGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLN 181
G + + N+ ILV TPGR+L LQ+ + TA+ ++LDEADK++++
Sbjct: 107 TGLIMGGLEAEDELLKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMG 166
Query: 182 FQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI 241
F++ +E IL+ +P++++T LFSAT +++ A+I K + L +
Sbjct: 167 FKEVLEDILEYIPQKKQTLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQLRQYFY 224
Query: 242 VIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
++ DK + K IV+F TC V + LK N ++F L G
Sbjct: 225 MMRTGDKINYLHTFIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRN------RIFCLSG 278
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ + R+ F + +LF TD+ +RG+D P VD+VIQ D P + + ++HR GRT
Sbjct: 279 GMSQKQRIDVFKRFVKE-KNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRT 337
Query: 362 GRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGV-ENLTK 408
R + G++ V+L G EE + ++ K ++E +E KG+ E +T+
Sbjct: 338 ARNSERGESYVYLVHG-EEKLLTDIQKKGWIKKQEGMEDKGISEEITE 384
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 174 bits (442), Expect = 3e-43
Identities = 123/386 (31%), Positives = 191/386 (48%), Gaps = 27/386 (6%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + A +++ + TP+Q+ IP D++ + TGSGKT AF IPIL RL ++
Sbjct: 132 PELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-- 189
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
+++ I++PTRELA QI + + +L +RS +VG ++ D
Sbjct: 190 ------EPYYACILAPTRELAQQIKETFDSL-----GSLMGVRSTCIVG--GMNMMDQAR 236
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILKMLP 194
+P I++ TPGR++D L+ T +V+DEAD+LLD+ F ++ ILK++P
Sbjct: 237 DLM-RKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 295
Query: 195 KQRRTG-LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
Q RT LFSAT+ S ++ + + L +V+P K
Sbjct: 296 TQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLI 355
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLD 313
N + K I++ T + N L + +LHG L RM +LD
Sbjct: 356 YLLNEFIGKTMIIFTRTKANAERLSGLCNLL--------EFSATALHGDLNQNQRMGSLD 407
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F + ++L TDVAARG+DIP VD+V+ D P D+ +IHR GRT RA R GK++
Sbjct: 408 LFKAGKR-SILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISL 466
Query: 374 LNEGREEDYVPFLEVKNVKLEEESVE 399
+++ E + EV KL +ESV+
Sbjct: 467 VSQYDLELILRIEEVLGKKLPKESVD 492
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 174 bits (440), Expect = 4e-43
Identities = 114/380 (30%), Positives = 186/380 (48%), Gaps = 43/380 (11%)
Query: 3 KSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFV 62
K L D+ CE A + +G+ T +Q IPL +D++ + TGSGKT AF
Sbjct: 27 KDLGVTDVLCE-------ACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 79
Query: 63 IPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
+PIL L++ +L+++PTRELA QI + E
Sbjct: 80 LPILNALLETP--------QRLFALVLTPTRELAFQISEQFEALGSS------------- 118
Query: 123 VGTSSASVRDDINSFTDN-----RPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADK 176
+G SA + I+S + + +P I++ TPGR++D L+ T + +V+DEAD+
Sbjct: 119 IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 178
Query: 177 LLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXL 236
+L+++F+ +V+ ILK++P+ R+T LFSAT+ ++ + ++ L
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKL 238
Query: 237 SINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKL 296
YI IP K K N +++ TC + + +L
Sbjct: 239 QQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNL--------GFTA 290
Query: 297 FSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIH 356
LHG++ R+ +L+ F + ++L TDVA+RG+DIP VD+V+ D PT + +IH
Sbjct: 291 IPLHGQMSQSKRLGSLNKFKAKAR-SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 349
Query: 357 RCGRTGRANRIGKALVFLNE 376
R GRT RA R GKA+ F+ +
Sbjct: 350 RVGRTARAGRSGKAITFVTQ 369
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 174 bits (440), Expect = 4e-43
Identities = 120/388 (30%), Positives = 194/388 (49%), Gaps = 34/388 (8%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
A + +G+ + +Q + +P KDV+ + TGSGKT AF IP+L+ L+
Sbjct: 58 ACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP------- 110
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
F L+++PTRELA QI E + I + ++ G A+ +
Sbjct: 111 -QAFFCLVLTPTRELAFQIGQQFEAL----GSGIGLIAAVIVGGVDMAAQAMALA----R 161
Query: 141 RPQILVGTPGRVLDFLQKT---NVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
RP I+V TPGR++D L+ T N+K +++DEAD++L+++F+ +++ ILK++P++R
Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKF--LIMDEADRILNMDFEVELDKILKVIPRER 219
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
RT LFSAT+ +++ + +R L +YI +P K K N
Sbjct: 220 RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLN 279
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+ IV+ TC + + L ++ LHG++ + R+ +L+ F S
Sbjct: 280 EHAGNSAIVFCATCATTMQIAVMLRQL--------GMQAVPLHGQMSQEKRLGSLNKFKS 331
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
+ +L TDVAARG+DIP VD+VI D P+ + ++HR GRT RA R G A+ + +
Sbjct: 332 KARE-ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQY 390
Query: 378 REEDYVPFLEVKNVKLEEESVELKGVEN 405
E Y KL+ E K VEN
Sbjct: 391 DVEAYQKIEANLGKKLD----EYKCVEN 414
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 172 bits (437), Expect = 1e-42
Identities = 152/582 (26%), Positives = 245/582 (41%), Gaps = 118/582 (20%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
++ + + +T VQ TIP KDV+V S TGSGKT+A+ +P++E L K++
Sbjct: 339 VKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQ 398
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS----SASVRDD 133
+K +L+I PTREL Q +++I+ +K Y + + LL G S A +R
Sbjct: 399 --RKDGVLALVIVPTRELVMQTYELIQKLVKPY---TWIVPGSLLGGESRKSEKARLRKG 453
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
IN IL+GTPGR++D L T + K ++LDEAD+LL+L +++DV+ +++
Sbjct: 454 IN--------ILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEA 505
Query: 193 LPKQR-----------RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXX------- 234
+ KQR + L SAT+ S Q+ ++
Sbjct: 506 IDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGY 565
Query: 235 ------------------------------XLSINYIVIPPKDKXXXXXX-----XXNNY 259
L ++Y+V+PPK + +
Sbjct: 566 QKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASP 625
Query: 260 RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDD-------------------LKLFSLH 300
+ K IV+ T V + + +N ++ ++ L+ F LH
Sbjct: 626 KQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLH 685
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G + R F + VL TDV RGID+PD+ LV+Q PP F+HR GR
Sbjct: 686 GSMTQTERQGVFRGF-RDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGR 744
Query: 361 TGRANRIGKALVFLNEGREEDYVPFLEVKNVKL----------------EEESVELKGVE 404
T RA R G+A++FL E +V LE K +++ +E +
Sbjct: 745 TARAGRKGRAVLFLTPS-EAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEARTVQEAAS 803
Query: 405 NLTKIFHDWILHDRARFDHSVRAYVAFIKYYS--KHTASSIFRFHSMDFIGVANFYGLLR 462
NL F + DR D S +A+V+++K+YS IF A + L
Sbjct: 804 NLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKE 863
Query: 463 LPRMPEITRYAADQIPEEGWLVSPPVNLDTFAYLDKQKEKAR 504
P +++AA + +PP N T+ D +K +A+
Sbjct: 864 AP-----SKFAAKHAAPK---AAPPTNRLTYTERDPEKIQAQ 897
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 172 bits (436), Expect = 1e-42
Identities = 132/434 (30%), Positives = 211/434 (48%), Gaps = 35/434 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P IE GF+TMT VQ +T+PL KD++ ++ TG+GKT+AF++P +E +IK
Sbjct: 87 LSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAP 146
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
S + L++ PTRELA Q LKY+P I Q+++G + +
Sbjct: 147 PASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPS----IGVQVVIG--GTKLPTE 200
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADKLLDLNFQKDVETIL 190
+ QILV TPGR+ D + T+ + +VLDEAD LLD+ F++++E I+
Sbjct: 201 QRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERII 260
Query: 191 KMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXX---XXXXXXXXXXXLSINYIVIPPKD 247
+PKQR+T LFSAT+ QI ++ +S Y +I D
Sbjct: 261 AAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMY-MIASLD 319
Query: 248 KXXX------XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
+ +N +K ++ F T VT A + LN+ + +H
Sbjct: 320 RHFSLLYGLLKKHITDNVGYK--VIIFCTTAMVTRLVADLLGKLSLNVRE-------IHS 370
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ R + D F + +L T+DV+ARG+D PDV LV+Q+ P+D + +IHR GRT
Sbjct: 371 RKPQSYRTRVSDEFRKS-KSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRT 429
Query: 362 GRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARF 421
GR + G+ ++ L E+Y VK++ + + S+ E + K+ I +
Sbjct: 430 GRKGKEGEGVLLL--APWEEYF-LSSVKDLPITKSSLPPIDHEAVKKVQKGLI---QVEM 483
Query: 422 DHSVRAYVAFIKYY 435
+ AY A++ YY
Sbjct: 484 TNKEAAYQAWLGYY 497
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 167 bits (423), Expect = 4e-41
Identities = 129/433 (29%), Positives = 198/433 (44%), Gaps = 48/433 (11%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AIE GF TP+Q TIP KDVV S TGSGKT AFVIP+L++L + + +
Sbjct: 38 AIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIR-- 95
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
+L++SPTRELA Q V+++ ++ +R LVG + + ++ +N
Sbjct: 96 -----ALMVSPTRELALQTFKVVKELGRFTG-----LRCACLVGGDQ--IEEQFSTIHEN 143
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
P IL+ TPGR+L + + +++ + VV DEAD+L ++ FQ + LK +P+ R+T
Sbjct: 144 -PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTL 202
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
LFSAT+ K G+ LS+ + + P +K N+
Sbjct: 203 LFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFC 262
Query: 261 FKKCI-VYFPTCI-------------------SVTYFYAFINHLKELN--LIQDDLKLFS 298
FKK + C F A + H++ + L + +
Sbjct: 263 FKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSF 322
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
++ +L +R + F + +L TDVAARG+DIP +D VI L P A +F+HR
Sbjct: 323 VYSQLDATARKMNIQKFHEKQNN-ILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRV 381
Query: 359 GRTGRANRIGKALVFLNEGREEDYVPFLE------VKNVKLEEESVELKGVENLTKIFHD 412
GR RA R G A+ + D +P+L K + + E K E L D
Sbjct: 382 GRVARAGRSGTAISLI----ANDELPYLTDLFMFLGKPINFASDKSEYKEDETLIGRVPD 437
Query: 413 WILHDRARFDHSV 425
I+ F HS+
Sbjct: 438 SIVSLETEFFHSI 450
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 167 bits (423), Expect = 4e-41
Identities = 130/455 (28%), Positives = 214/455 (46%), Gaps = 28/455 (6%)
Query: 19 RTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAK 78
+ ++ + MT VQ++ IP +D++ + TGSGKT+AFVIPILE+L +E +
Sbjct: 83 KRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWS--- 139
Query: 79 FKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFT 138
+ +IISPTRELA+Q V+ K+ + + LL+G D+
Sbjct: 140 -PEDGVGCIIISPTRELAAQTFGVLNKVGKF-----HKFSAGLLIGGREGV---DVEKER 190
Query: 139 DNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
+ ILV PGR+L + +T N + ++LDEAD++LD F+ ++ I+ LPK R
Sbjct: 191 VHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHR 250
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSI--NYIVIPPKDKXXXXXXX 255
+T LFSAT + + +R S+ +++P + K
Sbjct: 251 QTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSF 310
Query: 256 XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
+ + +V+ T V + + N L+ + L SLHGK+ + RM F
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLR------PGIPLKSLHGKMSQEKRMGVYSQF 364
Query: 316 TSNLTDAVLFTTDVAARGIDIPD-VDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
+VLF TDV ARG+D VD V+Q+D P D +IHR GRT R GK+L+FL
Sbjct: 365 IER--QSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFL 422
Query: 375 NEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKY 434
EE + L+ V ++ + ++ ++++ ++ + RA++ +++
Sbjct: 423 TPS-EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRS 481
Query: 435 YSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEI 469
K IF + + + NF L LP P I
Sbjct: 482 IHKRRDKEIF---DVSKLSIENFSASLGLPMTPRI 513
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 166 bits (419), Expect = 1e-40
Identities = 112/375 (29%), Positives = 194/375 (50%), Gaps = 23/375 (6%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+ S+G+ +P+Q++TIP+ KD++ +VTGSGKT AF+IPI+ERL+ + A A +
Sbjct: 246 LASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTR- 304
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+++ PTRELA Q+ DV + ++ + I L VG + ++ + +R
Sbjct: 305 ----VIVLLPTRELAIQVADVGKQIARF----VSGITFGLAVGGLNLRQQEQM---LKSR 353
Query: 142 PQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
P I++ TPGR +D ++ + + S +V+DEAD++L+ FQ ++ I+ +LP R+
Sbjct: 354 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 413
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
LFSAT+ S + ++ L+ ++ I +D
Sbjct: 414 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALL------ 467
Query: 261 FKKCIVYFPTCIS-VTYFYAFINHLKELNLIQD--DLKLFSLHGKLQTQSRMKTLDSFTS 317
F PT + F A L +I + + LHG L + R+ +++ F
Sbjct: 468 FNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKF-K 526
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
NL VL TD+A+RG+DIP +++VI D P +I++HR GRT RA R G+++ F+ E
Sbjct: 527 NLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGES 586
Query: 378 REEDYVPFLEVKNVK 392
++ + +K+V+
Sbjct: 587 SQDRSIVRAAIKSVE 601
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 166 bits (419), Expect = 1e-40
Identities = 123/447 (27%), Positives = 214/447 (47%), Gaps = 25/447 (5%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSH-FHSLII 89
T +Q TI DVV + TGSGKT+A VIP+LE L + AK+ + +LII
Sbjct: 100 TEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWR-----AKWSPDYGLGALII 154
Query: 90 SPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTP 149
SPTRELA Q I ++ + ++ G+ A R+ I+ I+V TP
Sbjct: 155 SPTRELALQTFSTINAVGAHHGFSC----GLVIGGSDVAFERNRISGIN-----IIVCTP 205
Query: 150 GRVLDFL-QKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIES 208
GR+L + + + S +VLDEAD++LD+ F K + +I+ LP +R+T LFSAT
Sbjct: 206 GRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTR 265
Query: 209 AGAQIFK--TGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIV 266
+ + T L +Y+++ + K +R KK +V
Sbjct: 266 NVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLV 325
Query: 267 YFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFT 326
+ +C + + L+ L + L G + + R++T F + AVL
Sbjct: 326 FVSSCKQARFLTEAFSQLRP------GLPVMGLWGTMNQKKRIETFTKFDESKA-AVLIA 378
Query: 327 TDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFL 386
TDVA+RG+D +D VIQ+D P D +IHR GR+ R + G +L+ ++ +EE + L
Sbjct: 379 TDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKL 438
Query: 387 EVKNVKLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKYYSKHTASSIFRF 446
E ++ +EE + + ++ + + +++ ++ VA+++ +F
Sbjct: 439 EKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKVFDV 498
Query: 447 HSMDFIGVANFYGLLRLPRMPEITRYA 473
++D +A+ +GL+ +PR+ + + A
Sbjct: 499 EAIDAAALADSFGLVSVPRVRFLNKKA 525
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 164 bits (415), Expect = 4e-40
Identities = 111/377 (29%), Positives = 190/377 (49%), Gaps = 32/377 (8%)
Query: 3 KSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFV 62
+ L+W DL + + A + + ++ + +Q IP+ KDV+ + TGSGKT AF
Sbjct: 59 QKLTWKDLG--LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFA 116
Query: 63 IPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
+PIL L++ + +L+++PTRELA QI + E + I+ ++
Sbjct: 117 LPILHALLENP--------QRYFALVLTPTRELAFQIGEQFEAL-----GSGIGIKCCVV 163
Query: 123 VGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKT---NVKTASCGTVVLDEADKLLD 179
VG + +P I++ TPGR++D L+ N+K +V+DEAD++L+
Sbjct: 164 VGGMDMVAQ---GLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKY--LVMDEADRILN 218
Query: 180 LNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN 239
++F+ +++ ILK+LP++RRT LFSAT+ ++ + ++ L +
Sbjct: 219 MDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQS 278
Query: 240 YIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSL 299
Y+ IP K K N +++ TC + + L L L
Sbjct: 279 YLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRAL--------GLAAIPL 330
Query: 300 HGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCG 359
HG++ R+ L+ F + ++L +TDVA+RG+DIP VD+V+ D PT + +IHR G
Sbjct: 331 HGQMSQNKRLAALNKFKAK-NRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 389
Query: 360 RTGRANRIGKALVFLNE 376
RT RA R GKA+ +++
Sbjct: 390 RTARAGRSGKAITLVSQ 406
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 163 bits (412), Expect = 8e-40
Identities = 145/512 (28%), Positives = 238/512 (46%), Gaps = 79/512 (15%)
Query: 25 MGFETMTPVQASTIP--LFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKS 82
M T +Q+ +P L + +KD +E+ TGSGKT+A+++PI++RLI+ N + S
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKN-LHTRTS 215
Query: 83 HFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRP 142
+++I++PTREL QI++V L P + + + ++ G S + I +
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANK-LNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN--- 271
Query: 143 QILVGTPGRVLDFLQKTNVKTAS-CGTVVLDEADKLLDLNFQKDVETILKML-------- 193
IL+GTPGR+ D L+ T S VVLDE D+L+D+ F++ + IL L
Sbjct: 272 -ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIK 330
Query: 194 -----PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSI-------NYI 241
P ++ T L SAT++ ++ + ++ S Y+
Sbjct: 331 KDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYV 390
Query: 242 VIPPKDKXXXXXXXXNNY--RFKKCIVYFPTCISVTY-FYAF---INH------LKELNL 289
V+PPK + ++ +KK I++ SV + F AF IN +KE
Sbjct: 391 VVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPD 450
Query: 290 IQDDL-------------KLFSLHGKLQTQSRMKTLDSFTSNLTDA--VLFTTDVAARGI 334
+ D+ ++ LHG L Q R TL+ F+S+ +L TDVAARG+
Sbjct: 451 SEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGL 510
Query: 335 DIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE--VKNVK 392
D+P+VDLV+Q D P D ++HR GRT RA G A++FL +E +Y+ L+ V
Sbjct: 511 DLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP-KESEYINLLKSSVSANI 569
Query: 393 LEE----ESVELKGVENLTKIFHDW--------------ILHDRARFDHSVRAYVAFIKY 434
LE+ + G +DW IL + + + RA+ ++++
Sbjct: 570 LEQPNGPSGLLSAGFSQGKTNTNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRA 629
Query: 435 YSKHTAS--SIFRFHSMDFIGVANFYGLLRLP 464
Y+ H +S SIF + +A + L P
Sbjct: 630 YATHLSSERSIFNMRDLHLGHIAKSFALREAP 661
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 163 bits (412), Expect = 8e-40
Identities = 122/392 (31%), Positives = 192/392 (48%), Gaps = 29/392 (7%)
Query: 5 LSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIP 64
+ + DL+ + + I+T E G T VQ IP G DV+ S TGSGKT+AFV+P
Sbjct: 1 MEFGDLRID-ESLIKTCQEK-GITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLP 58
Query: 65 ILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG 124
I+ L++ K F+ L+++PTREL+SQI + F +R LLVG
Sbjct: 59 IVSHLLQ--------KNRSFYCLVVAPTRELSSQIAECFNMF------QATGLRVCLLVG 104
Query: 125 TSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQ 183
++ +V+ + S RP ++VGTPGR+ + + KT + +T VLDEAD+ + +F
Sbjct: 105 GANFNVQANQLS---KRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFV 161
Query: 184 KDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
+D+ETI+ L ++R+T LF+AT+ +++ + ++ L Y+ +
Sbjct: 162 EDLETIIPSLREKRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFV 221
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
K K + IV+ C++ + L L + +LHG+L
Sbjct: 222 AMKWKNSALVELLEMSQGMSVIVFVSMCVTA--------RVMSLALARLGFCSEALHGEL 273
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ R + + SF + + VL TD+ +RG+DI VDLVI D P +IHR GRT R
Sbjct: 274 SQEKREEAMRSFKESRFN-VLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTAR 332
Query: 364 ANRIGKALVFLNEGREEDYVPFLEVKNVKLEE 395
A R G A+ + + E KLEE
Sbjct: 333 AGRSGTAITLVTQYDVEQIQKIEFTLEKKLEE 364
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 163 bits (412), Expect = 8e-40
Identities = 116/362 (32%), Positives = 180/362 (49%), Gaps = 26/362 (7%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + AI+ G++ TP+Q T+PL DVV + TGSGKT AF+IP+LE+L
Sbjct: 37 PNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKL------ 90
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
+ +LI+SPTR+LA Q ++ K+ +R LLVG S+ D
Sbjct: 91 KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-----TDLRVSLLVG--GDSMEDQFE 143
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKT-ASCGTVVLDEADKLLDLNFQKDVETILKMLP 194
T P +++ TPGR++ L + + T + VV DEAD L + F + + IL L
Sbjct: 144 ELTKG-PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLS 202
Query: 195 KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXX 254
+ R+T LFSAT+ SA A+ K G+R L ++++ + P++K
Sbjct: 203 ENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLY 262
Query: 255 XXNNY--RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312
+ ++ +++ +S + F+N L +L I+ + +G + +R +
Sbjct: 263 LVREHISSDQQTLIF----VSTKHHVEFVNSLFKLENIEPSV----CYGDMDQDARKIHV 314
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
F + T +L TD+AARGIDIP +D VI D P IF+HR GR RA R G A
Sbjct: 315 SRFRARKT-MLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYS 373
Query: 373 FL 374
F+
Sbjct: 374 FV 375
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 162 bits (410), Expect = 1e-39
Identities = 133/478 (27%), Positives = 223/478 (45%), Gaps = 52/478 (10%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
A+ F T VQ +I KDV+ ++TGSGKT+AF+IP+LE L + + +
Sbjct: 86 ALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWS----R 141
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
++IISPTRELA QI + ++ K++ + L++G + +
Sbjct: 142 TDGVGAIIISPTRELAYQIFETLKKVGKHHD-----FSAGLIIGGKNLK----FERTRMD 192
Query: 141 RPQILVGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
+ IL+ TPGR+L + + + T++ +VLDEAD+ LD+ FQK + +I++ P R+T
Sbjct: 193 QCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQT 252
Query: 200 GLFSAT------------------IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI 241
LFSAT + GA + L +Y+
Sbjct: 253 LLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYV 312
Query: 242 VIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
V+ +DK N+ +K IV+ +C Y Y L+ L +L+G
Sbjct: 313 VLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLR------PGSPLLALYG 366
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
L R+ + F + V+F+TDVA+RG+D P V+ V+QLD P D +IHR GR+
Sbjct: 367 TLHQDRRIAIYEDFLRK-SHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRS 425
Query: 362 GRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVE-NLTKIFHDWILHDR-- 418
R G+ L+ L EE + L+ E+ +++++ V+ + K+F + +
Sbjct: 426 ARNKTRGECLLVLTPSEEEYMISALK------EQLNIDIRCVQIDPKKLFSPRVKIEAFL 479
Query: 419 ARFDH----SVRAYVAFIKYYSKHTASSIFRFHSMDFIGVANFYGLLRLPRMPEITRY 472
A+F + RA++++IK +F S+D A GL PR+P + ++
Sbjct: 480 AQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKF 537
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 161 bits (408), Expect = 2e-39
Identities = 110/385 (28%), Positives = 189/385 (48%), Gaps = 30/385 (7%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I + + G + TP+Q +P +D++ + TGSGKT+ FV+P++ +++E +
Sbjct: 188 ILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP 247
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYP-IRSQLLVGTSSASVRDDINS 136
+ + LII P+RELA Q H++I+ + K+ P IRS L +G S D+ S
Sbjct: 248 FERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVIS 307
Query: 137 FTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
I+V TPGR++D L K + C + +DEAD+++D+ F++DV TI Q
Sbjct: 308 ---RGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQ 364
Query: 197 RRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXX 256
R+T LFSAT+ ++ + ++ + + K
Sbjct: 365 RQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAK-------- 416
Query: 257 NNYRFKKCIVYFPTCISVTY--FYAFINHLKELNLIQDDLKL-----FSLHGKLQTQSRM 309
+VY C+ T F ++++ I + L L ++HG + R
Sbjct: 417 --------VVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERS 468
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
+ +D++ D VL TDVA++G+D P+V VI D P D + ++HR GRTGR+N G
Sbjct: 469 RAVDAYRVGKKD-VLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGL 527
Query: 370 ALVFLNEGREEDYVPFLEVKNVKLE 394
A +N+ E+ + L++K++ +E
Sbjct: 528 ATTLINKTTEQSVL--LDLKHLLIE 550
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 159 bits (402), Expect = 1e-38
Identities = 109/387 (28%), Positives = 186/387 (47%), Gaps = 34/387 (8%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I ++ G TP+Q IP +D++ + TGSGKT+ F +P++ +++E
Sbjct: 192 ILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLP 251
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYP-IRSQLLVGTSSASVRDDINS 136
K+ + LII P+RELA Q H ++E + + ++ P +R L +G SV++ + +
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG--GMSVKEQMET 309
Query: 137 FTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
+ ++V TPGR++D LQK V C + LDEAD+++D+ F+ D+ TI Q
Sbjct: 310 IR-HGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQ 368
Query: 197 RRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXL--SINYIVIPPKDKXXXXXX 254
R+T LFSAT+ K+ + + + Y+ K
Sbjct: 369 RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK-------- 420
Query: 255 XXNNYRFKKCIVYFPTCISVT--YFYAFINHLKELNLIQDDLKL-----FSLHGKLQTQS 307
+VY C+ T F +++ I + L L ++HG +
Sbjct: 421 ----------MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEE 470
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R K +++F D VL TDVA++G+D P + VI D P + + ++HR GRTGR+
Sbjct: 471 RTKAIEAFREGKKD-VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Query: 368 GKALVFLNEGREEDYVPFLEVKNVKLE 394
G A F+N+ +E + +++K + LE
Sbjct: 530 GIATTFINKACDESVL--MDLKALLLE 554
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 159 bits (401), Expect = 1e-38
Identities = 131/437 (29%), Positives = 214/437 (47%), Gaps = 38/437 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I P A+ + G MT VQ +T+ KD +V++ TG+GK++AF++P +E ++K
Sbjct: 335 ISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKA- 393
Query: 74 ANSAKF--KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
NS K K + +LI+ PTRELASQI + LK++ I Q L+G + +
Sbjct: 394 MNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDG----IGVQTLIGGTRFKL- 448
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEADKLLDLNFQKDVET 188
D QIL+ TPGR+LD ++ + T+ + ++DEAD LLDL F++DVE
Sbjct: 449 -DQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 189 ILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXX---XXXXXXLSINYIVIPP 245
I+ LP+QR++ LFSATI ++ + ++ + + IV P
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPH 567
Query: 246 KDKX----XXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
+ NN K IV+ T + + Y + +K L + +H
Sbjct: 568 ESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMK--------LNVREIHA 619
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ R + D F + +L T+DV+ARG++ PDV LVIQ+ P+D + +IHR GRT
Sbjct: 620 RKPQLHRTRVSDEFKES-NRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRT 678
Query: 362 GRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDRARF 421
GR + G+ L+ + P+ +L++ +E +L I + A+
Sbjct: 679 GREGKGGEGLLLI--------APWERYFLDELKDLPLEPIPAPDLDSIVKHQVDQSMAKI 730
Query: 422 DHSVR--AYVAFIKYYS 436
D S++ AY A++ YY+
Sbjct: 731 DTSIKEAAYHAWLGYYN 747
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 158 bits (400), Expect = 2e-38
Identities = 115/399 (28%), Positives = 190/399 (46%), Gaps = 31/399 (7%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I + ++GFE T +Q TIPL KD+V +VTGSGKT AF++PILERL+
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK--- 326
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137
K LI+ PTRELA Q H V + I L +G S +++
Sbjct: 327 --KVPTTRVLILCPTRELAMQCHSVATKIASF-----TDIMVCLCIGGLSLKLQE---QE 376
Query: 138 TDNRPQILVGTPGRVLDFLQKTNVKTA-SCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
RP I++ TPGR +D ++ + T + +V+DEAD++L+ F ++ I++ PK
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436
Query: 197 RRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD---KXXXXX 253
R+T LFSAT+ + + + L+ ++ + P+ +
Sbjct: 437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLI 496
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL-NLIQDDLKLFSLHGKLQTQSRMKTL 312
++ I++F + AF + ++ + L+ L +HG L + R++ L
Sbjct: 497 YLCKELFHRRTIIFFRS-------KAFAHKMRVIFGLL--SLNATEIHGSLSQEQRVRAL 547
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
+ F + L TDVA+RGIDI +++VI + P ++++HR GRT RA R G+A+
Sbjct: 548 EDFRDGKCN-YLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAIT 606
Query: 373 FLNEGREEDYVPFLE---VKNVKLEEESVELKGVENLTK 408
EG + + +N KL +++ VE K
Sbjct: 607 LAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGK 645
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 157 bits (398), Expect = 3e-38
Identities = 113/381 (29%), Positives = 183/381 (47%), Gaps = 30/381 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
++ G TP+Q +P+ +D++ + TGSGKT+ FV+P++ ++EE
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAG 171
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYP-IRSQLLVGTSSASVRDDINSFTDN 140
+L+I P+RELA Q +DV+E F+ ++ YP +RS L +G + D+
Sbjct: 172 EGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDV---VKK 228
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
I+V TPGR+ D L K + +C + LDEAD+L+DL F+ D+ + QR+T
Sbjct: 229 GVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTL 288
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
LFSAT+ A QIF T I + ++
Sbjct: 289 LFSATM-PAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK----------- 336
Query: 261 FKKCIVYFPTCISVTY--FYAFINHLKELNLIQDDLKL-----FSLHGKLQTQSRMKTLD 313
IVY C+ T F + +++ I + L L ++HG + R +
Sbjct: 337 ----IVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAIS 392
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F + D VL TDVA++G+D PD+ VI D P + + ++HR GRTGR + G A F
Sbjct: 393 LFKAGKKD-VLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF 451
Query: 374 LNEGREEDYVPFLEVKNVKLE 394
+N+ + E + L++K++ E
Sbjct: 452 INKNQSE--ITLLDLKHLLQE 470
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 156 bits (394), Expect = 1e-37
Identities = 137/438 (31%), Positives = 216/438 (49%), Gaps = 40/438 (9%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I P A+ + G MT VQ +T+ KD +V++ TG+GK++AF++P +E ++K
Sbjct: 382 ISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKA- 440
Query: 74 ANSAK--FKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
NS K K + LI+ PTRELASQI + LK + I Q L+G R
Sbjct: 441 MNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDG----IGVQTLIG--GTRFR 494
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEADKLLDLNFQKDVET 188
D QIL+ TPGR+LD ++ + T+ + ++DEAD LLDL F++DVE
Sbjct: 495 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEK 554
Query: 189 ILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXX---XXXXXXLSINYIVIPP 245
I+ LP+QR++ LFSATI ++ + ++ + + IV P
Sbjct: 555 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPH 614
Query: 246 KDKX----XXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
+ NN K IV+ T + + Y + +K L + +H
Sbjct: 615 ESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMK--------LNVREIHA 666
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ R D F + +L T+DV+ARG++ PDV LVIQ+ P+D + +IHR GRT
Sbjct: 667 RKPQLHRTCVSDEFKES-NRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRT 725
Query: 362 GRANRIGKALVFLNEGREEDYVPFL-EVKNVKLEEESVELKGVENLTKIFHDWILHDRAR 420
GR + GK L+ + E Y FL E+K++ LE + + +++ H + A+
Sbjct: 726 GREGKGGKGLLLI--APWERY--FLDELKDLPLE----PIPAPDLDSRVKHQ-VDQSMAK 776
Query: 421 FDHSVR--AYVAFIKYYS 436
D S++ AY A++ YY+
Sbjct: 777 IDTSIKEAAYHAWLGYYN 794
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 155 bits (393), Expect = 1e-37
Identities = 112/363 (30%), Positives = 183/363 (49%), Gaps = 37/363 (10%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I S GFE + +Q+ I KDV+ ++ +G+GKT F I +L+ + +K
Sbjct: 38 IYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI--------DLRK 89
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELASQI V+++ Y N + I T +++DD+ +
Sbjct: 90 KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAI-------TGGKTLKDDLKKMQKHG 142
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD--LNFQKDVETILKMLPKQRRT 199
Q + GTPGRVLD ++K ++T + +VLDEAD+LL L F++ + I LPK +
Sbjct: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNY 259
+ SAT+ ++ + M + Y+V K++ +
Sbjct: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK-QYVVNVDKEE----------W 251
Query: 260 RFKK-CIVYFPTCISVTYFYAFINHLKELN-----LIQDDLKLFSLHGKLQTQSRMKTLD 313
+F C +Y +++T F N K+++ LIQ + + S+HG ++ + R K ++
Sbjct: 252 KFDTLCDIY--DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMN 309
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F + + VL +TDV ARGID+ V LVI D P + +IHR GR+GR R G A+ F
Sbjct: 310 DFRTGHS-RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF 368
Query: 374 LNE 376
+ +
Sbjct: 369 ITK 371
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 155 bits (392), Expect = 2e-37
Identities = 127/387 (32%), Positives = 179/387 (45%), Gaps = 60/387 (15%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AI GF+ TP+Q TIPL +DVV + TGSGKT AFVIP++E L ANS
Sbjct: 83 AIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANS---- 138
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
+ +LI+SP RELA Q V++DF K +RS +VG S ++ S
Sbjct: 139 --NTRALILSPNRELALQTVKVVKDFSKGTD-----LRSVAIVGGVSL---EEQFSLLSG 188
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
+P I+V TPGR L + ++ +S VV DEAD+L ++ F + IL LP R+T
Sbjct: 189 KPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTL 248
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINY-------------------I 241
LFSAT+ K G++ L + I
Sbjct: 249 LFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDII 308
Query: 242 VIPPKDKXX-XXXXXXNNYRFKK-----------------CIVYFPTCISVTYFYAFINH 283
+P KD NN + +K +V+ PT V Y
Sbjct: 309 KLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEY------- 361
Query: 284 LKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVI 343
+ EL L+Q + ++G L ++R+ +++F T+ +L TDVA+RGIDIP + VI
Sbjct: 362 VSEL-LVQAGYSVSKIYGSLDQEARLNEINNFRLGKTN-LLVVTDVASRGIDIPLLANVI 419
Query: 344 QLDPPTDADIFIHRCGRTGRANRIGKA 370
D P +F+HR GRT RA R G A
Sbjct: 420 NYDFPPQPKVFVHRVGRTARAGRTGWA 446
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 155 bits (391), Expect = 2e-37
Identities = 111/352 (31%), Positives = 164/352 (46%), Gaps = 27/352 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I G++ TP+Q TIPL +DVV + TGSGKT F+IP+ E+L + E
Sbjct: 110 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGA--- 166
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELA Q + I++ ++ ++S L++G S D S
Sbjct: 167 ---RALILSPTRELAVQTYKFIKELGRFME-----LKSILVLGGDSM---DSQFSAIHTC 215
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
P ++V TPGR L + ++K S VV DEAD+L ++ F + + L LP R+T +
Sbjct: 216 PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVM 275
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
FSAT+ + + G+ L++ ++ P D+
Sbjct: 276 FSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVL------ 329
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELN---LIQDDLKLFSLHGKLQTQSRMKTLDSFTSN 318
+ Y S T +A H EL L + + S++ L +R F N
Sbjct: 330 ---LKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFV-N 385
Query: 319 LTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKA 370
+VL TDVAARGIDIP +D V+ L P +F+HR GR RA R G A
Sbjct: 386 KKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTA 437
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 153 bits (386), Expect = 8e-37
Identities = 112/381 (29%), Positives = 183/381 (47%), Gaps = 30/381 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
++ G TP+Q +P+ +D++ + TGSGKT+ FV+P++ ++EE
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAG 220
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYP-IRSQLLVGTSSASVRDDINSFTDN 140
LI+ P+RELA Q ++V+E F+ + YP +RS L +G +R +
Sbjct: 221 EGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG--GIDMRSQLE-VVKR 277
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
I+V TPGR+ D L K + +C + LDEAD+L+DL F+ D+ + QR+T
Sbjct: 278 GVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTL 337
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
LFSAT+ + QIF R +++ I +
Sbjct: 338 LFSATMPTK-IQIF---ARSALVKPVTVNVGRAGAANLDVI------------QEVEYVK 381
Query: 261 FKKCIVYFPTCISVTY--FYAFINHLKELNLIQDDLKL-----FSLHGKLQTQSRMKTLD 313
+ IVY C+ T F + +++ I + L L ++HG + R +
Sbjct: 382 QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 441
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
SF + D VL TDVA++G+D PD+ VI D P + + ++HR GRTGR + G A F
Sbjct: 442 SFKAGKKD-VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 500
Query: 374 LNEGREEDYVPFLEVKNVKLE 394
+N+ + E L++K++ E
Sbjct: 501 INKNQSE--TTLLDLKHLLQE 519
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 152 bits (385), Expect = 1e-36
Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 30/382 (7%)
Query: 2 SKSLSWDDLKCE---IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKT 58
S+S+ D L I P I A+ S G E + P+Q + + +D++ + TG+GKT
Sbjct: 96 SESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKT 155
Query: 59 IAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIR 118
+AF IPI++++IK A + + L+++PTRELA Q+ K + ++ +
Sbjct: 156 LAFGIPIIDKIIKYNAKHGRGRNPL--CLVLAPTRELARQVE-------KEFRESAPSLD 206
Query: 119 SQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL 178
+ L G + + D + VGTPGRV+D +++ + + VVLDEAD++L
Sbjct: 207 TICLYG--GTPIGQQMRQL-DYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML 263
Query: 179 DLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSI 238
+ F +DVE IL+ LP++R++ +FSAT+ S + K + I
Sbjct: 264 QVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGI 323
Query: 239 -NYIVIPPK--DKXXXXXXXXNNYRFKKCIVYFPTCISVTYF-YAFINHLKELNLIQDDL 294
Y +I + + KCIV+ T YA +
Sbjct: 324 TTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYA----------LARSF 373
Query: 295 KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIF 354
K +LHG + R +TL F + +L TDVAARG+D+P+VDL+I + P + + F
Sbjct: 374 KCEALHGDISQSQRERTLAGFRDGHFN-ILVATDVAARGLDVPNVDLIIHYELPNNTETF 432
Query: 355 IHRCGRTGRANRIGKALVFLNE 376
+HR GRTGRA + G A++ ++
Sbjct: 433 VHRTGRTGRAGKKGSAILIYSQ 454
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 152 bits (385), Expect = 1e-36
Identities = 114/362 (31%), Positives = 180/362 (49%), Gaps = 25/362 (6%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I P I A++ G E + P+Q + + +D++ + TG+GKT+AF IPI++++IK
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFN 182
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
A + K L+++PTRELA Q+ ++F + P +L I L GT +
Sbjct: 183 AKHGRGKNPQ--CLVLAPTRELARQVE---KEFRESAP-SLDTIC--LYGGTPIGQQMRE 234
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+N D + VGTPGR++D +++ + + VVLDEAD++L + F +DVE IL+ L
Sbjct: 235 LNYGID----VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
P +R++ +FSAT+ S + K + I I
Sbjct: 291 PAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 254 ---XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMK 310
+ + KCIV+ T AF + K +LHG + R +
Sbjct: 351 IGPLVKEHGKGGKCIVFTQTKRDADRL-AF--------GLAKSYKCEALHGDISQAQRER 401
Query: 311 TLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKA 370
TL F ++L TDVAARG+D+P+VDLVI + P + + F+HR GRTGRA + G A
Sbjct: 402 TLAGFRDG-NFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSA 460
Query: 371 LV 372
++
Sbjct: 461 IL 462
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 152 bits (384), Expect = 1e-36
Identities = 121/384 (31%), Positives = 183/384 (47%), Gaps = 24/384 (6%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK----EEANS 76
A E +G++ + +QA +P KDV+ + TGSGKT AF IPIL+ L++ E
Sbjct: 23 ACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKK 82
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINS 136
+ F + ++SPTRELA QI E F D +R +LVG R
Sbjct: 83 GRRPDPAFFACVLSPTRELAIQI---AEQFEALGAD--ISLRCAVLVGGID---RMQQTI 134
Query: 137 FTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
RP V TPGR+ D + T S +VLDEAD+LL+ +F+K + IL+ +P
Sbjct: 135 ALGKRPH--VATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPL 192
Query: 196 QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXX 255
+R+T LFSAT+ ++ + +R L Y + K K
Sbjct: 193 ERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYI 252
Query: 256 XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
+ +++ TC T F A + L+ L + + G++ R+ L+ F
Sbjct: 253 LSEMPESTSMIFTRTCDG-TRFLALV--LRSLGF-----RAIPISGQMTQSKRLGALNKF 304
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
+ + +L TDVA+RG+DIP VD+VI D PT++ +IHR GRT RA R G + +N
Sbjct: 305 KAGECN-ILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVN 363
Query: 376 EGREEDYVPFLEVKNVKLEEESVE 399
+ E Y+ ++ KL E E
Sbjct: 364 QYELEWYIQIEKLIGKKLPEYPAE 387
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 151 bits (381), Expect = 3e-36
Identities = 117/412 (28%), Positives = 192/412 (46%), Gaps = 45/412 (10%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW++ K + + A+E G++ +P+Q + IPL +DV+ + TGSGKT AFV+P+
Sbjct: 314 SWEESKLTSE--LLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L + + S + + ++++++PTRELA QI + F Y R +VG
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHY-----LGFRVTSIVG- 425
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
S+ + T +I++ TPGR++D L++ C VVLDEAD+++D+ F+
Sbjct: 426 -GQSIEEQGLKITQG-CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ 483
Query: 186 VETILKMLPKQ-----------------RRTGLFSATIESAGAQIFKTGMRXXXXXXXXX 228
V +L +P R T +FSAT+ ++ + +R
Sbjct: 484 VAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
Query: 229 XXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLK 285
+S + I++ +K + K IV+ T C S+
Sbjct: 544 AGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIA---------- 593
Query: 286 ELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQL 345
NL + ++ +LHG + R +L+ F + + VL TDV RGIDIPDV VI
Sbjct: 594 -KNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYN-VLVATDVVGRGIDIPDVAHVINY 651
Query: 346 DPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEES 397
D P +++ HR GRTGRA + G A FL D F ++K + ++ S
Sbjct: 652 DMPKHIEMYTHRIGRTGRAGKSGVATSFLT---LHDTEVFYDLKQMLVQSNS 700
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 150 bits (380), Expect = 4e-36
Identities = 113/360 (31%), Positives = 171/360 (47%), Gaps = 36/360 (10%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHS 86
F TP+QA P KDVV + TGSGKT AF +P + L+ ++ KK
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQ------KKRGIQV 185
Query: 87 LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA--SVRDDINSFTDNRPQI 144
L+ISPTRELASQI+D NL + ++ + V D + Q+
Sbjct: 186 LVISPTRELASQIYD-----------NLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQV 234
Query: 145 LVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP-KQRRTGLFS 203
+V TPGR+LD LQ+ +V + +VLDEAD++L+ F++D++ I++ +R+T +F+
Sbjct: 235 VVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFT 294
Query: 204 ATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV--IPPKDKXXXXXXXXNNY-- 259
AT ++ T M I IV + P+ K Y
Sbjct: 295 ATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHS 354
Query: 260 ---RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFT 316
+ +K +++ Y E NL + + ++HG L Q R + L+ F
Sbjct: 355 GPKKNEKVLIFA--------LYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
S ++ +L TDVAARG+DIP+V VI L P + ++HR GRTGRA + G A E
Sbjct: 407 SGKSN-LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTE 465
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 150 bits (378), Expect = 7e-36
Identities = 113/405 (27%), Positives = 191/405 (46%), Gaps = 56/405 (13%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-EEANSAKF 79
A++ +G+ TP+Q IP+ N+DV+ + TGSGKT AF++P+L + + +
Sbjct: 315 AVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+ +++I++PTRELA QI + F K L I++ ++G +S R+D
Sbjct: 375 RDLGPYAIIMAPTRELAQQIEEETNKFGK-----LLGIKTVSVIGGAS---REDQGMKLR 426
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP----- 194
++++ TPGR+LD L+ + C V+LDEAD++LD+ F+ DV+ +L+ +P
Sbjct: 427 MGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMK 486
Query: 195 --------------------KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXX 234
K R+T +F+AT+ SA ++ + +R
Sbjct: 487 KDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTE 546
Query: 235 XLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL 294
+ + + P+D+ +F+ I+ F +N K +++ L
Sbjct: 547 RVE-QVVYMVPEDRKRKKLVEVLESQFQPPIIIF------------VNQKKGADMLSKGL 593
Query: 295 -----KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT 349
K LHG R L + +D +L TDVA RGID+ DV LV+ D
Sbjct: 594 TKLGFKPTVLHGGKGQDQREYALQALKEGTSD-ILVATDVAGRGIDVKDVSLVLNYDMAK 652
Query: 350 DADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLE 394
+ + HR GRTGRA + GKA+ FL +D + ++K V +E
Sbjct: 653 SIEDYTHRIGRTGRAGKHGKAITFLT---PDDTAVYFDLKQVLVE 694
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 150 bits (378), Expect = 7e-36
Identities = 113/405 (27%), Positives = 191/405 (46%), Gaps = 56/405 (13%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-EEANSAKF 79
A++ +G+ TP+Q IP+ N+DV+ + TGSGKT AF++P+L + + +
Sbjct: 315 AVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+ +++I++PTRELA QI + F K L I++ ++G +S R+D
Sbjct: 375 RDLGPYAIIMAPTRELAQQIEEETNKFGK-----LLGIKTVSVIGGAS---REDQGMKLR 426
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP----- 194
++++ TPGR+LD L+ + C V+LDEAD++LD+ F+ DV+ +L+ +P
Sbjct: 427 MGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMK 486
Query: 195 --------------------KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXX 234
K R+T +F+AT+ SA ++ + +R
Sbjct: 487 KDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTE 546
Query: 235 XLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL 294
+ + + P+D+ +F+ I+ F +N K +++ L
Sbjct: 547 RVE-QVVYMVPEDRKRKKLVEVLESQFQPPIIIF------------VNQKKGADMLSKGL 593
Query: 295 -----KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT 349
K LHG R L + +D +L TDVA RGID+ DV LV+ D
Sbjct: 594 TKLGFKPTVLHGGKGQDQREYALQALKEGTSD-ILVATDVAGRGIDVKDVSLVLNYDMAK 652
Query: 350 DADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLE 394
+ + HR GRTGRA + GKA+ FL +D + ++K V +E
Sbjct: 653 SIEDYTHRIGRTGRAGKHGKAITFLT---PDDTAVYFDLKQVLVE 694
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 149 bits (377), Expect = 9e-36
Identities = 117/393 (29%), Positives = 193/393 (48%), Gaps = 35/393 (8%)
Query: 19 RTAIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
+ ++ GFE MTPVQ + +F ++ VV++ TG+GKT+AF++ + ++K
Sbjct: 50 KNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLK---GKP 106
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137
+ S HS+I+SPTRELA QI + L Y IR +G +S +R++ N+
Sbjct: 107 RLNSSKIHSVILSPTRELALQIFEEARK-LTYGTG----IRVSYAIGGNS-KMREE-NAI 159
Query: 138 TDNRPQILVGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
+L+ TPGR+ D LQ + ++ S + +LDEAD+L+D+ F + + I + +
Sbjct: 160 RRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTT 219
Query: 197 RRTGL-FSATIESAGAQIFK--TGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
+ L FSAT+ + +F+ G +++ DK
Sbjct: 220 KTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSS 279
Query: 254 XX-----XNNYRFKKCIVYFPTCISVTYFYAFI-NHLKELNLIQDDLKLFSLHGKLQTQS 307
++ + IV+ PT V + + NHLK + F LH L T
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLK--------IPCFILHSGLTTAQ 331
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R +SF +LF TDV ARG+D P++ V+Q+ P++ D +IHR GRTGRA +
Sbjct: 332 RRSITESF-RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKT 390
Query: 368 GKALVFLNEGREEDYVPFL-EVKNVKLEEESVE 399
G+A + L E + PFL +K++ L+ ++E
Sbjct: 391 GEAYLILLEQEK----PFLNSIKHLPLKRATIE 419
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 149 bits (376), Expect = 1e-35
Identities = 112/373 (30%), Positives = 180/373 (48%), Gaps = 28/373 (7%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + + G+ TPVQ +IP N+D++ + TGSGKT AF++PI++ ++ +
Sbjct: 132 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 191
Query: 76 SAK------FKKSHFH-SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA 128
K +++++ +L++SPTRELA QIH F Y N I++ +L G
Sbjct: 192 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS--YKSN---IQTAILYG-GRE 245
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVET 188
+ RD +N IL+ TPGR++D +++ + A C +VLDEAD++LD+ F+ +
Sbjct: 246 NYRDQVNRLRAGT-HILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 304
Query: 189 IL--KMLPK-QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI--VI 243
I+ M PK R T +FSAT + K ++ + V
Sbjct: 305 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 364
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
+ + N + +V+ T F+N + ++ S+HG L
Sbjct: 365 EMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLN--------RQQIRSVSIHGDL 416
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ R + L+ F S +L T VAARG+DIP+V VI D P D+D ++HR GRTGR
Sbjct: 417 KQIERERNLELFRSGQC-PILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGR 475
Query: 364 ANRIGKALVFLNE 376
+G A F N+
Sbjct: 476 CGNLGIATSFFND 488
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 149 bits (376), Expect = 1e-35
Identities = 112/373 (30%), Positives = 180/373 (48%), Gaps = 28/373 (7%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + + G+ TPVQ +IP N+D++ + TGSGKT AF++PI++ ++ +
Sbjct: 129 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 188
Query: 76 SAK------FKKSHFH-SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA 128
K +++++ +L++SPTRELA QIH F Y N I++ +L G
Sbjct: 189 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS--YKSN---IQTAILYG-GRE 242
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVET 188
+ RD +N IL+ TPGR++D +++ + A C +VLDEAD++LD+ F+ +
Sbjct: 243 NYRDQVNRLRAGT-HILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 301
Query: 189 IL--KMLPK-QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI--VI 243
I+ M PK R T +FSAT + K ++ + V
Sbjct: 302 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 361
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
+ + N + +V+ T F+N + ++ S+HG L
Sbjct: 362 EMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLN--------RQQIRSVSIHGDL 413
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ R + L+ F S +L T VAARG+DIP+V VI D P D+D ++HR GRTGR
Sbjct: 414 KQIERERNLELFRSGQC-PILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGR 472
Query: 364 ANRIGKALVFLNE 376
+G A F N+
Sbjct: 473 CGNLGIATSFFND 485
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 149 bits (375), Expect = 2e-35
Identities = 132/394 (33%), Positives = 188/394 (47%), Gaps = 34/394 (8%)
Query: 11 KCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLI 70
K I +R +++ G E + P+QAST + D+V + TG GKT+AFV+PILE L+
Sbjct: 100 KFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLV 159
Query: 71 KEEANSAKFKKSHFHS---LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSS 127
A S K K + S L++ PTRELA Q V DF Y + S L G S
Sbjct: 160 NGPAKS-KRKMGYGRSPSVLVLLPTRELAKQ---VAADFDAY--GGSLGLSSCCLYGGDS 213
Query: 128 ASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVE 187
V++ I+VGTPGR+ D +++ N+ + VLDEAD++L + F +DVE
Sbjct: 214 YPVQE---GKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVE 270
Query: 188 TILKMLPKQRR--TGLFSATIESAGAQIFKTGM-RXXXXXXXXXXXXXXXXLSINYIVIP 244
IL + + T LFSAT+ S I + R S+ +I IP
Sbjct: 271 LILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIP 330
Query: 245 PKDKXXXXXXXXNNYRFKKCIVYFPTCIS---VTYFYAFIN-HLKELNLIQDDLKLFSLH 300
N + I +C S T +A + EL+ + D + +LH
Sbjct: 331 -----------CNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSR--ALH 377
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G++ R TL F N A L T+VAARG+DI DV L+IQ +PP + + +IHR GR
Sbjct: 378 GEIPQSQREVTLAGF-RNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 361 TGRANRIGKALVFLNEGREEDYVPFLEVKNVKLE 394
TGRA G A V L + R+ + +K E
Sbjct: 437 TGRAGNTGVA-VTLYDSRKSSVSRIEKEAGIKFE 469
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 148 bits (374), Expect = 2e-35
Identities = 121/427 (28%), Positives = 197/427 (45%), Gaps = 71/427 (16%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW D + P I I+ G++ TP+Q IP+ N+D++ + TGSGKT AF+IP+
Sbjct: 392 SWKD--SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 66 LERLIK-------EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIR 118
L + EE++ + ++I++PTRELA QI E+ +K+ IR
Sbjct: 450 LVWITTLPKIDRIEESDQGPY------AIILAPTRELAQQIE---EETIKF--GKPLGIR 498
Query: 119 SQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL 178
+ ++G S R+D +I++ TPGR++D L+ + + C VVLDEAD+++
Sbjct: 499 TVAVIGGIS---REDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI 555
Query: 179 DLNFQKDVETILKMLP--------------------------KQRRTGLFSATIESAGAQ 212
D+ F+ DV+ IL+ +P K R+T +F+AT+ A +
Sbjct: 556 DMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVER 615
Query: 213 IFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCI 272
+ ++ +R + ++ +K KK +
Sbjct: 616 LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKR------------KKLLAILEQGF 663
Query: 273 SVTYFYAFINHLKELNLIQDDLKLF-----SLHGKLQTQSRMKTLDSFTSNLTDAVLFTT 327
F+N K +++ L+ +LHG + R L + + D +L T
Sbjct: 664 DPP-IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD-ILVAT 721
Query: 328 DVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE 387
DVA RGIDI DV +V+ D + + +IHR GRTGRA + G A+ FL +ED F E
Sbjct: 722 DVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT---KEDSAVFYE 778
Query: 388 VKNVKLE 394
+K LE
Sbjct: 779 LKQAILE 785
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 148 bits (374), Expect = 2e-35
Identities = 121/427 (28%), Positives = 197/427 (45%), Gaps = 71/427 (16%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW D + P I I+ G++ TP+Q IP+ N+D++ + TGSGKT AF+IP+
Sbjct: 392 SWKD--SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 66 LERLIK-------EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIR 118
L + EE++ + ++I++PTRELA QI E+ +K+ IR
Sbjct: 450 LVWITTLPKIDRIEESDQGPY------AIILAPTRELAQQIE---EETIKF--GKPLGIR 498
Query: 119 SQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL 178
+ ++G S R+D +I++ TPGR++D L+ + + C VVLDEAD+++
Sbjct: 499 TVAVIGGIS---REDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI 555
Query: 179 DLNFQKDVETILKMLP--------------------------KQRRTGLFSATIESAGAQ 212
D+ F+ DV+ IL+ +P K R+T +F+AT+ A +
Sbjct: 556 DMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVER 615
Query: 213 IFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCI 272
+ ++ +R + ++ +K KK +
Sbjct: 616 LARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKR------------KKLLAILEQGF 663
Query: 273 SVTYFYAFINHLKELNLIQDDLKLF-----SLHGKLQTQSRMKTLDSFTSNLTDAVLFTT 327
F+N K +++ L+ +LHG + R L + + D +L T
Sbjct: 664 DPP-IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD-ILVAT 721
Query: 328 DVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE 387
DVA RGIDI DV +V+ D + + +IHR GRTGRA + G A+ FL +ED F E
Sbjct: 722 DVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT---KEDSAVFYE 778
Query: 388 VKNVKLE 394
+K LE
Sbjct: 779 LKQAILE 785
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 148 bits (374), Expect = 2e-35
Identities = 117/408 (28%), Positives = 186/408 (44%), Gaps = 42/408 (10%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
W + +G TPVQ +P +DV+ + TGSGKT AF +PIL RL ++
Sbjct: 68 WAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYG- 126
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINS 136
+L+++PTRELA Q+ + + + +R ++VG +
Sbjct: 127 -------VFALVVTPTRELAFQLAEQFKAL-----GSCLNLRCSVIVGGMDMLTQ---TM 171
Query: 137 FTDNRPQILVGTPGRVLDFLQKT-NVKTASCGT--VVLDEADKLLDLNFQKDVETILKML 193
+RP I++ TPGR+ L+ +V T +VLDEAD++LD+ FQ ++ TI + L
Sbjct: 172 SLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL 231
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
PK R+T LFSAT+ S + + L+ +I K
Sbjct: 232 PKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLV 291
Query: 254 XXXNNYR---FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKL--FSLHGKLQTQSR 308
+ + +++ TC + L+L+ D+L++ ++H R
Sbjct: 292 HILSQMEDKGIRSAMIFVSTC----------RTCQRLSLMLDELEVENIAMHSLNSQSMR 341
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ L F S +L TDVA+RG+DIP VDLVI D P D ++HR GRT RA R G
Sbjct: 342 LSALSKFKSGKV-PILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGG 400
Query: 369 KALVFLNEGR-------EEDYVPFLEVKNVKLEEESVELKGVENLTKI 409
A+ + E EE+ +E N K+ +S+E+ V ++
Sbjct: 401 LAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRV 448
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 148 bits (373), Expect = 3e-35
Identities = 128/455 (28%), Positives = 209/455 (45%), Gaps = 74/455 (16%)
Query: 2 SKSLSWDDLKCE--IQPWIRTAIESMGFETMTPVQASTIP--LFSGNKDVVVESVTGSGK 57
SK ++ D L E + I AI M F +TPVQ TI L S + DV+ + TG+GK
Sbjct: 99 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGK 158
Query: 58 TIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPI 117
T AF+IPI + LI + +S K ++I++PTR+LA Q IE +K D Y +
Sbjct: 159 TFAFLIPIFQHLINTKFDSQYMVK----AVIVAPTRDLALQ----IEAEVKKIHDMNYGL 210
Query: 118 RSQLLVG-TSSASVRDDINSFTDNRPQILVGTPGRVLDFLQK-TNVKTASCGTVVLDEAD 175
+ V R +N RP I++ TPGR++D L+K +N VLDEAD
Sbjct: 211 KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 270
Query: 176 KLLDLNFQKDVETILKMLPKQR-------RTGLFSATIESAGAQIFKTGM---------- 218
+LL++ F+ D+ETI +L ++ +T LFSAT++ ++ M
Sbjct: 271 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 330
Query: 219 ----------RXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYF 268
R ++ +I K++ +NY K I++
Sbjct: 331 VDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-------DSNY---KAIIFA 380
Query: 269 PTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTD 328
PT ++ + + N + DL + HGK+ R + F + +L TD
Sbjct: 381 PTVKFTSFLCSILK-----NEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTD 434
Query: 329 VAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE------------ 376
V ARG+D P+V V+Q+ P++ +IHR GRT R+ + G +++F+ +
Sbjct: 435 VGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 494
Query: 377 -----GREEDYVPFLEVKNVKLEEESVELKGVENL 406
++E Y P E+K+ LE + E + + ++
Sbjct: 495 KNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDI 529
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 148 bits (373), Expect = 3e-35
Identities = 110/376 (29%), Positives = 180/376 (47%), Gaps = 36/376 (9%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
S+DD+ E++ + I GFE + +Q I + KDV+ ++ +G+GKT F + I
Sbjct: 30 SFDDM--ELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+R+ E+ H +L+++PTRELA QI V+ +Y N+ P
Sbjct: 88 LQRIDHEDP--------HVQALVMAPTRELAQQIQKVMSALGEYLNVNILPC-------I 132
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
SVRDD + ++VGTPGRV D + + + T+ VLDEAD++L F+
Sbjct: 133 GGTSVRDDQRKL-EAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQ 191
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ + + +P+ + L SAT+ S + MR + YI +
Sbjct: 192 IYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQ- 250
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLI-----QDDLKLFSLH 300
KD+ ++F C+ ++VT F N ++++ + ++ + LH
Sbjct: 251 KDE----------WKFD-CLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLH 299
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G + R + F S + VL TTD+ ARGID+ V LVI D P++ + +IHR GR
Sbjct: 300 GDMDQAERDTIMREFRSG-SSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGR 358
Query: 361 TGRANRIGKALVFLNE 376
+GR R G A+ F+ E
Sbjct: 359 SGRFGRKGVAINFVTE 374
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 146 bits (369), Expect = 8e-35
Identities = 104/350 (29%), Positives = 163/350 (45%), Gaps = 26/350 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I GFE +P+Q +IP+ D++ + G+GKT AF IP LE++ E
Sbjct: 169 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPEN-------- 220
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ ++I+ PTRELA Q V ++ KY ++ +++V T S+RDDI
Sbjct: 221 NVIQAVILVPTRELALQTSQVCKELSKY-------LKIEVMVTTGGTSLRDDIMRLYQP- 272
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
+LVGTPGR+LD +K C +V+DEADKLL + FQ +E +++ LP+ R+ +
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILM 332
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
FSAT + FK ++ Y + + K + +
Sbjct: 333 FSATF-PVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQI 391
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTD 321
+ I++ C SV + EL F +H K+ R + F N
Sbjct: 392 NQSIIF---CNSVNRVELLAKKITELG-----YSCFYIHAKMVQDHRNRVFHDF-RNGAC 442
Query: 322 AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
L TD+ RGIDI V++VI D P ++ ++HR GR+GR +G A+
Sbjct: 443 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 492
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 146 bits (369), Expect = 8e-35
Identities = 108/388 (27%), Positives = 183/388 (46%), Gaps = 34/388 (8%)
Query: 13 EIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE 72
E+QP + I + GFE + +Q I F DV+ ++ +G+GKT F +L++L
Sbjct: 47 ELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL--- 103
Query: 73 EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132
+L+++PTRELA QI V+ Y +++Q VG SVR+
Sbjct: 104 -----DISLVQCQALVLAPTRELAQQIEKVMRALGDYLG-----VKAQACVG--GTSVRE 151
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
D + ++VGTPGRV D L++ +++ + VLDEAD++L F+ + I ++
Sbjct: 152 D-QRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQL 210
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
LP + + G+FSAT+ +I + M + Y+ + ++
Sbjct: 211 LPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLET 270
Query: 253 XXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQS 307
C +Y +++T F+N ++++ + D ++ + + HG + +
Sbjct: 271 L----------CDLY--ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 318
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R + F S + VL TTD+ ARGID+ V LVI D PT + ++HR GR+GR R
Sbjct: 319 RDIIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRK 377
Query: 368 GKALVFLNEGREEDYVPFLEVKNVKLEE 395
G A+ F+ E NV +EE
Sbjct: 378 GVAINFMTSEDERMMADIQRFYNVVVEE 405
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 146 bits (368), Expect = 1e-34
Identities = 106/360 (29%), Positives = 168/360 (46%), Gaps = 24/360 (6%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
G T T +Q IP+ +D++ + TGSGKT+ FV+P++ +++E +
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 86 SLIISPTRELASQIHD-VIEDFLKYYPDNLYPIRSQLLVG-----TSSASVRDDINSFTD 139
LII P+RELA QI D +IE F L +R+ L +G + VRD I+
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIH---- 324
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
I+V TPGR+ D L K + C +VLDEAD++LD+ F+ ++++I QR+T
Sbjct: 325 ----IVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQT 380
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNY 259
LFSAT+ Q F + + +
Sbjct: 381 LLFSATMPRK-IQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQK 439
Query: 260 RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNL 319
K +++ + V Y + L+ +++ S+HG R +++F N
Sbjct: 440 TSPKVLIFAEKKVDVDNIYEY--------LLVKGVEVASIHGGKDQSDRHAGIEAFRKNE 491
Query: 320 TDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGRE 379
D VL TDVA++G+D ++ VI D P D + ++HR GRTGR+ R G A F+N+ E
Sbjct: 492 KD-VLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSE 550
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 146 bits (368), Expect = 1e-34
Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 28/351 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I GFE +P+Q +IP+ D++ + G+GKT AF IP+LE++ + N+
Sbjct: 139 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI---DPNN----- 190
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ ++I+ PTRELA Q V ++ KY + Q++V T S+RDDI ++
Sbjct: 191 NVIQAMILVPTRELALQTSQVCKELSKY-------LNIQVMVTTGGTSLRDDIMRL--HQ 241
Query: 142 P-QILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
P +LVGTPGR+LD +K C +V+DEADKLL FQ +E +++ LP+ R+
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFL 301
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
+FSAT + FK ++ Y + + K + +
Sbjct: 302 MFSATF-PVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQ 360
Query: 261 FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLT 320
+ I++ C SV + EL F +H K+ R + F N
Sbjct: 361 INQSIIF---CNSVNRVELLAKKITELG-----YSCFYIHAKMVQDHRNRVFHEF-RNGA 411
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
L TD+ RGIDI V++VI D P ++ ++HR GR+GR +G A+
Sbjct: 412 CRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 462
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 145 bits (367), Expect = 1e-34
Identities = 108/385 (28%), Positives = 176/385 (45%), Gaps = 28/385 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-------EEA 74
I+ F TPVQ +IP+ + +D++ + TGSGKT F+ P+ L + E+A
Sbjct: 169 IKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKA 228
Query: 75 NSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDI 134
S +K + +L+++PTRELA+QI + F Y + V A + + +
Sbjct: 229 QSFYSRKGYPSALVLAPTRELATQIFEEARKFT-------YRSWVRPCVVYGGAPIGNQM 281
Query: 135 NSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP 194
D +LV TPGR+ D L++ V A+ +VLDEAD++LD+ F+ + I++
Sbjct: 282 RE-VDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340
Query: 195 ----KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXX 250
+ R+T +FSAT + + + ++ + + DK
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400
Query: 251 XXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMK 310
+ +++ T F LI + K ++HG R +
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDF--------LIMQNFKATAIHGDRTQAERER 452
Query: 311 TLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKA 370
L +F +N+ D +L T VAARG+DIP+V VI D P+D D ++HR GRTGRA G A
Sbjct: 453 ALSAFKANVAD-ILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVA 511
Query: 371 LVFLNEGREEDYVPFLEVKNVKLEE 395
F N + +E+ N +E
Sbjct: 512 TSFFNSNNQNIVKGLMEILNEANQE 536
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 145 bits (366), Expect = 2e-34
Identities = 106/350 (30%), Positives = 161/350 (45%), Gaps = 26/350 (7%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
GFE +P+Q +IP+ +D++ + G+GKT AFVIP LE++ KKS
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV--------DTKKSKIQ 114
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
+LI+ PTRELA Q V + K+ + +++V T ++RDDI D I+
Sbjct: 115 TLILVPTRELALQTSQVCKTLGKH-------MNVKVMVTTGGTTLRDDIIRLNDT-VHIV 166
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
VGTPGRVLD K + C T V+DEADKLL F +E +L PK R+ L+SAT
Sbjct: 167 VGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSAT 226
Query: 206 IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI 265
+ F ++ Y + K + + + I
Sbjct: 227 FPLI-VKNFMDKHLNKPYEINLMDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSI 285
Query: 266 VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF 325
++ C S + EL F H K+ R + +F + + L
Sbjct: 286 IF---CNSTNRVELLAKKITELG-----YSCFYSHAKMLQSHRNRVFHNFRNGVC-RNLV 336
Query: 326 TTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
+D+ RGIDI V++VI D P +A+ ++HR GR+GR G A+ F++
Sbjct: 337 CSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 145 bits (365), Expect = 2e-34
Identities = 110/378 (29%), Positives = 176/378 (46%), Gaps = 28/378 (7%)
Query: 3 KSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFV 62
++LS+ D+ +P ++ AI +MGF+ TP+Q + IP+ KD+ + TG+GKT AF
Sbjct: 216 ENLSFQDMNLS-RPLLK-AITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 273
Query: 63 IPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
+P+LERLI + + + L++ PTREL Q+H V ++ L
Sbjct: 274 LPVLERLIYKPRQAPVTR-----VLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLD 328
Query: 123 VGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQK-TNVKTASCGTVVLDEADKLLDLN 181
V + A++R P IL+ TPGR++D L + +S ++LDEAD++LD
Sbjct: 329 VKSQEAALR--------AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY 380
Query: 182 FQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI 241
F++ ++ I++M R+T LFSAT+ + ++ L +I
Sbjct: 381 FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFI 440
Query: 242 VIPPK---DKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
I P D+ +++ T H + L L++
Sbjct: 441 RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQA--------HRMHILLGLMGLQVGE 492
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LHG L R++ L F D +L TDVAARG+DI V VI P ++HR
Sbjct: 493 LHGNLSQTQRLEALRRFKDEQID-ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 551
Query: 359 GRTGRANRIGKALVFLNE 376
GRT RA R G+++ + E
Sbjct: 552 GRTARAGRAGRSVSLVGE 569
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 144 bits (364), Expect = 3e-34
Identities = 122/380 (32%), Positives = 182/380 (47%), Gaps = 37/380 (9%)
Query: 22 IESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
++ G + P+Q T P++ G KD++ ++ TG+GKT +F IP++ERL + N K
Sbjct: 152 LKGRGVTYLFPIQVKTFGPVYEG-KDLIAQARTGTGKTFSFAIPLIERL---QRNQETIK 207
Query: 81 KSHFHS-LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
KS L+++PTRELA+Q+ +D + + GTS S + I + D
Sbjct: 208 KSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACF------YGGTSYQSQINHIRNGID 261
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK---- 195
ILVGTPGR+ D LQ + + VVLDE D++LDL F + VE I+ K
Sbjct: 262 ----ILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSE 317
Query: 196 -QRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVI----PPKDKX 249
+T LFSAT ++ K M+ ++ ++ I +
Sbjct: 318 DNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAV 377
Query: 250 XXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRM 309
+ + I++ T +VT A H+K+ LHG + R
Sbjct: 378 IGDVLQVYSGSEGRAIIFCETKKNVTEM-AMNPHIKQ--------NAQCLHGDIAQSQRE 428
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
TL F + VL T+VAARG+DIP+VDLVIQ PP D + +IHR GRTGRA R G
Sbjct: 429 ITLKGFREG-SFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGI 487
Query: 370 ALVFLNEGREEDYVPFLEVK 389
+ F + RE + ++E K
Sbjct: 488 CICFY-QPRERGQLRYVEQK 506
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 144 bits (363), Expect = 4e-34
Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 25/350 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I MG+E +P+Q +IP+ +D++ + G+GK+ A++IP+LERL KK
Sbjct: 100 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--------DLKK 151
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ +++I PTRELA Q+ + K+ ++++ T ++RDDI D+
Sbjct: 152 DNIQAMVIVPTRELALQVSQICIQVSKHMGG------AKVMATTGGTNLRDDIMRL-DDT 204
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
+++ TPGR+LD ++K K +VLDEADKLL +F + +E I+ LPK R+ L
Sbjct: 205 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 264
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
+SAT Q F ++ Y + + K + +
Sbjct: 265 YSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQI 323
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTD 321
+ I++ + V I+ L F +H K++ + R + F + L
Sbjct: 324 NQSIIFCNSSQRVELLAKKISQL--------GYSCFYIHAKMRQEHRNRVFHDFRNGLC- 374
Query: 322 AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
L TD+ RGIDI V++VI D P A+ ++HR GR+GR +G A+
Sbjct: 375 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAI 424
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 142 bits (359), Expect = 1e-33
Identities = 139/529 (26%), Positives = 226/529 (42%), Gaps = 97/529 (18%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I T + +MT VQ +IP+ +D +V S TGSGKT+A+ IP+++ L +A +
Sbjct: 242 ISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSL---QAMES 298
Query: 78 KFKKSHF-HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG----TSSASVRD 132
K ++S ++L++ PTRELA Q D ++ LK + + + L+ G + A +R
Sbjct: 299 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRKSEKARLRK 355
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
IN IL+ TPGR++D ++ T N+ + +V DEAD++LDL F+KD+ IL
Sbjct: 356 GIN--------ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN 407
Query: 192 MLP---KQRRTGLFSATIESAGAQIFKTGMRXXXXXX----------------------- 225
+ ++R+ L SAT+ ++ +
Sbjct: 408 AVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPP 467
Query: 226 ---XXXXXXXXXXLSINYIVIPPKDKXX-XXXXXXNNYRF---KKCIVYFPTCISVTYFY 278
L + V+P K + +F +K +V+F +C V + Y
Sbjct: 468 AGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHY 527
Query: 279 A-FINHL---------KELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTD 328
+ F+ L +L LK LHG ++ + R F S+ VL TD
Sbjct: 528 SLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEF-SHSRRGVLLCTD 586
Query: 329 VAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEV 388
VAARG+D+P V ++Q + P+ +IHR GRT R G +L+ L E +YV L
Sbjct: 587 VAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPS-EAEYVNSLAS 645
Query: 389 KNVKLEEESVE-----------LKG-------------------VENLTKIFHDWILHDR 418
+ + E +E KG L +F D++
Sbjct: 646 HKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSE 705
Query: 419 ARFDHSVRAYVAFIKYYSKH--TASSIFRFHSMDFIGVANFYGLLRLPR 465
R + +A +FI+ Y+ + IF S+ VA +GL PR
Sbjct: 706 RRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPR 754
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 142 bits (359), Expect = 1e-33
Identities = 110/389 (28%), Positives = 184/389 (47%), Gaps = 34/389 (8%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE----E 73
I ++ + +E P+Q +P+ +D + + TGSGKT+ FV+P+L R IK+ E
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML-RHIKDQPPVE 598
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
A L+++PTREL QIH I F K P+ G+ A +
Sbjct: 599 AGDGPI------GLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYG----GSGVAQQISE 648
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEADKLLDLNFQKDVETIL 190
+ T +I+V TPGR++D L ++ K + V V+DEAD++ D+ F+ + I+
Sbjct: 649 LKRGT----EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRII 704
Query: 191 KMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXX 250
+ + +R+T LFSAT + + + ++ V P D+
Sbjct: 705 QNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 764
Query: 251 XXXXXXNNYRFK-KCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRM 309
+ K K +V+ + Y ++I+ SLHG R
Sbjct: 765 RLLELLGEWSEKGKILVFVQSQEKCDALYR--------DMIKSSYPCLSLHGGKDQTDRE 816
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
T+ F +++ + +L T VAARG+D+ +++LV+ D P + ++HR GRTGRA R G
Sbjct: 817 STISDFKNDVCN-LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 875
Query: 370 ALVFLNEGREEDYVPFLEVKNVKLEEESV 398
A+ F++E + Y P L VK ++L E+ V
Sbjct: 876 AVTFISED-DAKYAPDL-VKALELSEQPV 902
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 142 bits (358), Expect = 1e-33
Identities = 120/416 (28%), Positives = 192/416 (45%), Gaps = 47/416 (11%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ W+ ++ +M T +Q + IP +D + + TGSGKTIAF P+L + ++
Sbjct: 9 LSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDP 68
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
S ++++PTRELA QI E F + IR ++VG S V+
Sbjct: 69 --------SGMFGVVLTPTRELAMQI---AEQFTAL--GSSMNIRVSVIVGGESI-VQQA 114
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTAS----CGTVVLDEADKLLDLNFQKDVETI 189
++ +P ++ TPGR+ + + T +VLDEAD LL F + T
Sbjct: 115 LD--LQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATC 172
Query: 190 LKMLPKQ--RRTGLFSATI-------ESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINY 240
+ LP + R+T LF+ATI ++A Q K + L I Y
Sbjct: 173 ISALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPL-FAYQVESVDNVAIPSTLKIEY 231
Query: 241 IVIPP--KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
I++P K+ Y K I++ ++ + L Q ++++ S
Sbjct: 232 ILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTA--------EILRRTLKQLEVRVAS 283
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LH ++ Q R +L F +N +L TDVA+RG+DIP V+LV+ D P+D D+FIHR
Sbjct: 284 LHSQMPQQERTNSLHRFRANAA-RILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRS 342
Query: 359 GRTGRANRIGKALVFLNE------GREEDYVPFLEVKNVKLEEESVELKGVENLTK 408
GRT RA RIG A+ F+ + ED + + K+ + +V K + +TK
Sbjct: 343 GRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTK 398
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 142 bits (358), Expect = 1e-33
Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 42/382 (10%)
Query: 5 LSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIP 64
L +D+L ++ +R +++ ++ TP+QA+T P +DVV + TGSGKT+AF IP
Sbjct: 167 LQFDEL--DVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 65 ILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG 124
L+ L N KS L++SPTRELA Q ++ + ++ NL ++ ++ G
Sbjct: 223 ALQYL-----NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ--GTNL---KAVVVYG 272
Query: 125 TSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQK 184
+ S + + +++GTPGR+LD + ++ + G +VLDEAD++LD F++
Sbjct: 273 GAPKSEQ----ARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 185 DVETILKMLPKQRRTG-----LFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXX 235
D+ I+ P R G FSAT + + A K ++
Sbjct: 329 DIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQ---- 384
Query: 236 LSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL- 294
+I IV D N R + + F+ + KE ++ L
Sbjct: 385 -NITQIVEILDDPRSKERMLDNLLR-----KHLSSGGKDDKILIFVLYKKEAARVEGTLA 438
Query: 295 ---KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDA 351
+ +HG + +R++ L+ F S VL TDVAARG+DIP V LVI + P
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKC-PVLVATDVAARGLDIPKVQLVINVTFPLTI 497
Query: 352 DIFIHRCGRTGRANRIGKALVF 373
+ ++HR GRTGRAN G A+ F
Sbjct: 498 EDYVHRIGRTGRANTKGTAITF 519
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 142 bits (358), Expect = 1e-33
Identities = 99/360 (27%), Positives = 179/360 (49%), Gaps = 34/360 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I + GFE + +Q +P +DV+ ++ +G+GKT F I +L+ L + +
Sbjct: 41 IYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRET----- 95
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELA QI V+ Y ++ +G ++ +DI D
Sbjct: 96 ---QALILSPTRELAVQIQKVVLALGDYMN-----VQCHACIG--GTNLGEDIRKL-DYG 144
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
++ GTPGRV D +++ N++T + +VLDEAD++L+ F++ + I + LP + L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
SAT+ ++ M + ++ + ++ ++F
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREE-----------WKF 253
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLDSFT 316
I + T +++T F N ++++ + D +K + S+HG ++ + R + + F
Sbjct: 254 DTLIDLYDT-LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
+ T VL +TDV ARG+D+P V LVI D P + +++IHR GR+GR R G A+ F+ +
Sbjct: 313 AG-TTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQ 371
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 142 bits (358), Expect = 1e-33
Identities = 123/404 (30%), Positives = 183/404 (44%), Gaps = 40/404 (9%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++PW+ + +G + TP+Q IP +D + + TGSGKT AF +PILERL +E
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
SHF +L+++PT ELA QI E FL +R ++ G + V
Sbjct: 74 V-------SHF-ALVLTPTHELAYQIS---EQFL--VAGQAMGVRVCVVSGGTDQMVE-- 118
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGT---VVLDEADKLLDLNFQKDVETIL 190
+ RP I+V PGR+ D L T T S +V+DEAD++L+ +F + + I
Sbjct: 119 -SQKLMQRPHIVVAMPGRLADHL--TGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIE 175
Query: 191 KMLPKQRRTGLFSATIES--AGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDK 248
+ LPK R+ FSAT++ + IF L Y++ D+
Sbjct: 176 RCLPKTRQNLFFSATMKDFIKESSIFPIA-SDCFEWSQDSDVATVETLDQRYLLCADYDR 234
Query: 249 XXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS-----LHGKL 303
YR + F N K L+ LK LHG +
Sbjct: 235 DMVLIEALRKYREEN---------ENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFM 285
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ + R+ L F SN L TDVAARG+DIP V+LV+ P +IHR GRT R
Sbjct: 286 RQKERVAALSRFKSNQI-RTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTAR 344
Query: 364 ANRIGKALVFLNEGREEDYVPFLEVK-NVKLEEESVELKGVENL 406
A R G ++ R+ + + +E + N KL E ++ + VE +
Sbjct: 345 AGRKGMSISIFRFPRDLELLAAIEEEINTKLTEHPIDQRMVERI 388
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 142 bits (357), Expect = 2e-33
Identities = 125/437 (28%), Positives = 193/437 (43%), Gaps = 88/437 (20%)
Query: 23 ESMGFETMTPVQASTIPLFSGN---KDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
+ M + T +Q IP GN D + + TGSGKT+++++PI+ ++ + +
Sbjct: 160 QKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVD-- 217
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLK--YYPDNLYPIRSQLLVG-----TSSASVRD 132
+ S +L+I+PTRELASQI+ V + +Y L P LL+G + A +R
Sbjct: 218 RTSGAFALVIAPTRELASQIYHVCSTLVSCCHY---LVPC---LLIGGERKKSEKARLRK 271
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNV----KTASCGTVVLDEADKLLDLNFQKDVET 188
N ++GTPGRVLD LQ T V + S +VLDE DKL++L F + +
Sbjct: 272 GCN--------FIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISE 323
Query: 189 ILKM-------------LPKQRRTGLFSATIESAGAQIFKTGMR------XXXXXXXXXX 229
I+K+ LP + L SAT+ ++ ++
Sbjct: 324 IIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIV 383
Query: 230 XXXXXXLSINYIVIPPKDKXXXXXXXXNNY-----------RFKKCIVYFPTCISVTYFY 278
L ++PPK + NN + + IV+ SV + Y
Sbjct: 384 TVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHY 443
Query: 279 -AFI---NHLKEL-------------------NLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
AF H K L + D+ ++ LHG L Q R TL F
Sbjct: 444 DAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHF 503
Query: 316 -----TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKA 370
+ ++F TDVA+RG+D+P V VI+LDPP + +HR GRT RA G++
Sbjct: 504 ARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGES 563
Query: 371 LVFLNEGREEDYVPFLE 387
L+FL G EE Y+ +++
Sbjct: 564 LLFLLPGEEEKYMDYIQ 580
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 142 bits (357), Expect = 2e-33
Identities = 116/393 (29%), Positives = 178/393 (44%), Gaps = 44/393 (11%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
++ G + P+QA T KD++ ++ TG+GKT +F IP++E+L E + + +
Sbjct: 133 LKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRA 192
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLK------YYPDNLYPIRSQLLVGTSSASVRDDIN 135
L+++PTRELA+Q+ D K +Y Y G +R+ I+
Sbjct: 193 PQV--LVLAPTRELANQVSKDFSDITKKLSVACFYGGTPY--------GGQFERMRNGID 242
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
ILVGTPGR+ D +Q + VVLDE D++LD+ F VE IL + K
Sbjct: 243 --------ILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYK 294
Query: 196 Q-----RRTGLFSATIESAGAQIFKTGMRXX-XXXXXXXXXXXXXXLSINYIVI----PP 245
+ +T LFSAT + K M+ +++ ++ I
Sbjct: 295 KDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQ 354
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQT 305
+ + + I++ T L + + I+ D + SLHG +
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEA-------QELSQNSAIKQDAQ--SLHGDIPQ 405
Query: 306 QSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRAN 365
+ R TL F N + VL T+VAARG+DIP+VDLVIQ PP D + +IHR GRTGRA
Sbjct: 406 KQREITLKGF-RNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 464
Query: 366 RIGKALVFLNEGREEDYVPFLEVKNVKLEEESV 398
R G + F E V + +K + V
Sbjct: 465 RTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGV 497
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 140 bits (354), Expect = 4e-33
Identities = 116/391 (29%), Positives = 183/391 (46%), Gaps = 26/391 (6%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNK---DVVVESVTGSGKTIAFV 62
+W++L + +R I+ + F + TP+Q TIP K D + + TGSGKT+AFV
Sbjct: 173 NWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFV 232
Query: 63 IPILERLIKEEANSAKFKKSHF-HSLIISPTRELASQIHDVIEDFLKYYP-DNLYPIRSQ 120
IPIL ++ + K +LI++PTREL QI + K + ++ Y +
Sbjct: 233 IPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVI 292
Query: 121 LLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDL 180
+VG S ++I+ ILV TPGR++D L+ + T+VLDEADK++DL
Sbjct: 293 SIVGGHSL---EEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDL 349
Query: 181 NFQKDVETILKML------PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXX 234
F+ V IL + R+T +F+AT+ +I G
Sbjct: 350 GFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKI-AAGYMQKPVYATIGVETGSE 408
Query: 235 XLSINYIVIPPKDKXXXXXXXXNNYRFKKCIV--YFPTCISVTYFYAFINHLKELNLIQD 292
L + D+ + ++ K IV Y P I + + L E +
Sbjct: 409 PLIQQVVEYADNDE--------DKFKKLKPIVAKYDPPIIIFINYKQTADWLAEKFQKET 460
Query: 293 DLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDAD 352
++K+ LHG + R +L F +N ++ T+VAARG+DIP+V LV+ D
Sbjct: 461 NMKVTILHGSKSQEQREHSLQLFRTNKVQ-IMIATNVAARGLDIPNVSLVVNFQISKKMD 519
Query: 353 IFIHRCGRTGRANRIGKALVFLNEGREEDYV 383
+IHR GRTGRA G A+ F++ +E +
Sbjct: 520 DYIHRIGRTGRAANEGTAVSFVSAAEDESLI 550
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 140 bits (354), Expect = 4e-33
Identities = 101/350 (28%), Positives = 157/350 (44%), Gaps = 26/350 (7%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
GFE +P+Q IP+ +D++ + G+GKT AFVIP LE++ K K +
Sbjct: 65 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV--------KPKLNKIQ 116
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
+LI+ PTRELA Q V+ K+ +V T ++RDDI + IL
Sbjct: 117 ALIMVPTRELALQTSQVVRTLGKH-------CGISCMVTTGGTNLRDDILRLNET-VHIL 168
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
VGTPGRVLD + + C ++DEADK+L +F+ +E IL LP ++ LFSAT
Sbjct: 169 VGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT 228
Query: 206 IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI 265
+ F ++ Y + + K + + + I
Sbjct: 229 FPLT-VKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAI 287
Query: 266 VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF 325
++ C S + +L + H +++ Q R K F L
Sbjct: 288 IF---CNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKV-RTLV 338
Query: 326 TTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
+D+ RGIDI V++VI D P A+ ++HR GR+GR +G A+ +N
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 388
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 140 bits (354), Expect = 4e-33
Identities = 115/400 (28%), Positives = 186/400 (45%), Gaps = 31/400 (7%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW +C + + I S+G+E T +QA IP + +DV+ + TGSGKTIAF++P+
Sbjct: 419 SWS--QCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
+ ++ K + ++I++PTRELA QI + FLK L IR+ G
Sbjct: 477 FRHI--KDQRPLKTGEGPI-AIIMTPTRELAVQIFRECKPFLK-----LLNIRACCAYG- 527
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTAS---CGTVVLDEADKLLDLNF 182
A ++D I +I+V TPGR++D L + + C +VLDEAD++ DL F
Sbjct: 528 -GAPIKDQIADL-KRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
Query: 183 QKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV 242
+ V I+ + R+T LFSAT A + + ++ + V
Sbjct: 586 EPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEV 645
Query: 243 IPPKDKXX----XXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
P + K NN + +V+ S A ++ L + + S
Sbjct: 646 RPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESAD---ALLSDLMKRGYTSN-----S 697
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
+HG R T+ + + + D VL T V ARG+D+ + LV+ D P + ++HR
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFD-VLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRV 756
Query: 359 GRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESV 398
GRTGRA G A+ F+ +E+ V K +K+ ++ V
Sbjct: 757 GRTGRAGHTGVAVTFITPEQEKYAVDI--AKALKMSKQPV 794
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 140 bits (354), Expect = 4e-33
Identities = 107/356 (30%), Positives = 160/356 (44%), Gaps = 27/356 (7%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE--ANSAKFKKSHFHSLI 88
TPVQ IP+ +D++ + TGSGKT AF PI+ ++K++ + + ++I
Sbjct: 175 TPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVI 234
Query: 89 ISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGT 148
+SPTRELA QIHD + F Y +++V + + + ILV T
Sbjct: 235 LSPTRELACQIHDEAKKFS-------YQTGVKVVVAYGGTPIHQQLREL-ERGCDILVAT 286
Query: 149 PGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ----RRTGLFSA 204
PGR+ D L++ V + LDEAD++LD+ F+ + I++ + R+T LFSA
Sbjct: 287 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSA 346
Query: 205 TIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKC 264
T S ++ M ++ + DK + R +
Sbjct: 347 TFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQ- 405
Query: 265 IVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVL 324
T A E L ++ S+HG Q R L SF + T +L
Sbjct: 406 --------DKTKRGA---DTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRT-PIL 453
Query: 325 FTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
TDVAARG+DIP V V+ D P D D ++HR GRTGRA + G A F NE +
Sbjct: 454 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQ 509
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 140 bits (352), Expect = 7e-33
Identities = 113/363 (31%), Positives = 172/363 (47%), Gaps = 22/363 (6%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE-EANSAKFKKSHF 84
G+ TP+Q T+PL D++ + TGSGKT AF++PI+ RLI E + N+A +
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYP 630
Query: 85 HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQI 144
+I++PTREL QI++ F + P+ L VG + + + I
Sbjct: 631 RCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQI--------EKGATI 682
Query: 145 LVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETIL--KMLPKQ--RRT 199
+VGT GR+ F ++ +K C VLDEAD+++D + F D++TI+ + +PK+ R+T
Sbjct: 683 IVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQT 742
Query: 200 GLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDK-XXXXXX 254
+FSAT ++ A K G KDK
Sbjct: 743 LMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGI 802
Query: 255 XXNNYRFKK-CIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLD 313
++Y +K VY I A + L + L + ++HG + + R + L
Sbjct: 803 DIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASI-LSSAQVPAITIHGAREQRERSEALR 861
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F N + VL T VA RG+DI VD VI D P + D +IHR GRTGR G+A F
Sbjct: 862 QF-RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSF 920
Query: 374 LNE 376
++E
Sbjct: 921 ISE 923
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 140 bits (352), Expect = 7e-33
Identities = 108/374 (28%), Positives = 166/374 (43%), Gaps = 36/374 (9%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE--ANSAKFKKSHFHSLI 88
TPVQ + IP+ + +D++ + TGSGKT AF PI+ ++K++ + + ++I
Sbjct: 170 TPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVI 229
Query: 89 ISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGT 148
+SPTRELA QIHD F Y +++V V I + ILV T
Sbjct: 230 LSPTRELACQIHDEARKF-------SYQTGVKVVVAYGGTPVNQQIREL-ERGVDILVAT 281
Query: 149 PGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML----PKQRRTGLFSA 204
PGR+ D L++ V + LDEAD++LD+ F+ + I++ + P R+T LFSA
Sbjct: 282 PGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 341
Query: 205 TIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXX-----XXXXXXNNY 259
T ++ + + + DK N
Sbjct: 342 TFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGN 401
Query: 260 RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKL-----FSLHGKLQTQSRMKTLDS 314
+ K+ + F+ K + +++ L + ++HG Q R L S
Sbjct: 402 QGKQALT-----------LVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRS 450
Query: 315 FTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
F + T +L TDVAARG+DIP V V+ D P D D ++HR GRTGRA G A F
Sbjct: 451 FKTGRT-PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFF 509
Query: 375 NEGREEDYVPFLEV 388
N+ P E+
Sbjct: 510 NDNNTTMAKPLAEL 523
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 139 bits (351), Expect = 9e-33
Identities = 108/367 (29%), Positives = 170/367 (45%), Gaps = 29/367 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I G++ TP+Q TIP+ KDVV + TGSGKT F++P+ ERL A +
Sbjct: 111 IMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGA--- 167
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELA Q ++ K+ +++ L++G + D + +N
Sbjct: 168 ---RALILSPTRELALQTLKFTKELGKFTG-----LKTALILGGDR--MEDQFAALHEN- 216
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
P I++ TPGR++ + ++K S VV DEAD+L ++ F + ++ I+ LP +T L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
FSAT+ + + G+ L ++ ++ K +N
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHN--- 333
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELN--LIQDDLKLFSLHGKLQTQSRMKTLDSFTSNL 319
V P +V F A +H + L L + ++ L +R L FT
Sbjct: 334 ----VVRPQDQTVV-FVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGK 388
Query: 320 TDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGRE 379
+ L TD+AARG+DIP +D VI P +F+HR GR RA R G A +
Sbjct: 389 C-STLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV----A 443
Query: 380 EDYVPFL 386
D +P+L
Sbjct: 444 PDEIPYL 450
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 139 bits (351), Expect = 9e-33
Identities = 109/385 (28%), Positives = 174/385 (44%), Gaps = 20/385 (5%)
Query: 13 EIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE 72
+I +R +E G+ TP+Q T+PL + KD++ + TGSGKT AF++PI+ RLI E
Sbjct: 304 DIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILE 363
Query: 73 -EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ N + +I++PTRELA QI++ F + P+ + VG + + +
Sbjct: 364 KDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIM 423
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETIL 190
I+VGT GRV F + +K C +VLDEAD+++D + F ++E I+
Sbjct: 424 KGCT--------IIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQII 475
Query: 191 --KMLPK--QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPK 246
K +PK +R+T +FSAT S+ + + +R I + +
Sbjct: 476 NYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDR 535
Query: 247 DKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQD-----DLKLFSLHG 301
+ + V F+ K + + + ++HG
Sbjct: 536 TSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHG 595
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ + R L F S VL T V RG+DI VD VI D P + D +IHR GRT
Sbjct: 596 AREQKERSAALKLFRSG-AKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRT 654
Query: 362 GRANRIGKALVFLNEGREEDYVPFL 386
GR G+A F++ + +P L
Sbjct: 655 GRVGNSGRATSFISLADDVQILPQL 679
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 139 bits (351), Expect = 9e-33
Identities = 106/387 (27%), Positives = 180/387 (46%), Gaps = 34/387 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+Q + I + GFE + +Q I F DV+ ++ +G+GKT F +L++L
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL---- 101
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
F +L+++PTRELA QI V+ Y ++ VG SVR+D
Sbjct: 102 ----DFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG-----VKVHACVG--GTSVRED 150
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
++VGTPGRV D L++ +++ + VLDEAD++L F+ + I ++L
Sbjct: 151 -QRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
P + + G+FSAT+ +I + M + Y+ + ++
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL 269
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSR 308
C +Y +++T F+N ++++ + D ++ + + HG + +R
Sbjct: 270 ----------CDLY--ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR 317
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ F S + VL TTD+ ARGID+ V LVI D PT + ++HR GR+GR R G
Sbjct: 318 DIIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 369 KALVFLNEGREEDYVPFLEVKNVKLEE 395
A+ F+ E + NV +EE
Sbjct: 377 VAINFVTRDDERMLFDIQKFYNVVVEE 403
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 139 bits (351), Expect = 9e-33
Identities = 107/386 (27%), Positives = 180/386 (45%), Gaps = 37/386 (9%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
++ I GF T +QA P+ +D+V + TGSGKT+A+V+P + + N
Sbjct: 160 YVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHI----NNQ 215
Query: 77 AKFKKSHFH-SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
+ ++ +L+++PTRELA QI V +F N + + + G D+
Sbjct: 216 PRLERGDGPIALVLAPTRELAQQIQQVAIEF----GSNTHVRNTCIFGGAPKGQQARDL- 270
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+ +I++ TPGR++DFL++ C +VLDEAD++LD+ F+ + I++ +
Sbjct: 271 ---ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRP 327
Query: 196 QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXX 255
R+ ++SAT Q+ + + LS N+ ++ D
Sbjct: 328 DRQVLMWSATWPKEVRQLAEEFLN-----NYIQVNIGSLSLSANHNILQIVD------VC 376
Query: 256 XNNYRFKKCIVYFPTCISV---TYFYAFINHLKEL-----NLIQDDLKLFSLHGKLQTQS 307
N + K ++ T IS T F+ K + N+ + + ++HG Q
Sbjct: 377 DENEKLMK-LIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQE 435
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R L SF N ++L TDVAARG+D+ DV VI D P++++ ++HR GRTGR+N
Sbjct: 436 RDFVLSSF-RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNT 494
Query: 368 GKALVFL---NEGREEDYVPFLEVKN 390
G A N + D + L N
Sbjct: 495 GTAYTLFTHSNANKANDLIQVLREAN 520
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 138 bits (348), Expect = 2e-32
Identities = 108/371 (29%), Positives = 167/371 (44%), Gaps = 34/371 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILE-----------RLI 70
IE + TPVQ IP+ +D++ + TGSGKT AF++PIL R +
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 254
Query: 71 KEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASV 130
KE + +K + SL+++PTRELA QI++ F Y R + V A +
Sbjct: 255 KENGRYGR-RKQYPISLVLAPTRELAVQIYEEARKFS-------YRSRVRPCVVYGGADI 306
Query: 131 RDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
I + +LV TPGR++D +++ + C +VLDEAD++LD+ F+ + I+
Sbjct: 307 GQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV 365
Query: 191 K---MLPK-QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPK 246
+ M PK R T +FSAT + + + ++ + +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEES 425
Query: 247 DKXXXXXXXXN-NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQT 305
DK N + +V+ T F+ H + S+HG
Sbjct: 426 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH--------EGYACTSIHGDRSQ 477
Query: 306 QSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRAN 365
+ R + L F S +L T VAARG+DI +V VI D P+D + ++HR GRTGR
Sbjct: 478 RDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 536
Query: 366 RIGKALVFLNE 376
+G A F NE
Sbjct: 537 NLGLATSFFNE 547
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 138 bits (347), Expect = 3e-32
Identities = 111/375 (29%), Positives = 173/375 (45%), Gaps = 42/375 (11%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERL-----------I 70
IE + TPVQ IP+ G +D++ + TGSGKT AF++PIL ++ +
Sbjct: 193 IELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAV 252
Query: 71 KEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASV 130
KE + +K + SL+++PTRELA QI++ F Y R + V A +
Sbjct: 253 KENGRYGR-RKQYPISLVLAPTRELAVQIYEEARKF-------SYRSRVRPCVVYGGADI 304
Query: 131 RDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
I + +LV TPGR++D +++ + C +VLDEAD++LD+ F+ + I+
Sbjct: 305 GQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV 363
Query: 191 K---MLPK-QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPK 246
+ M PK R T +FSAT + + + ++ + +
Sbjct: 364 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDL 423
Query: 247 DKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL-----KLFSLHG 301
DK F I+ S+T F+ K + ++D L S+HG
Sbjct: 424 DKRS----------FLLDILGATGSDSLT--LVFVETKKGADSLEDFLYHEGYACTSIHG 471
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
+ R + L F S +L T VAARG+DI +V VI D P+D + ++HR GRT
Sbjct: 472 DRSQRDREEALHQFRSG-KSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRT 530
Query: 362 GRANRIGKALVFLNE 376
GR +G A F NE
Sbjct: 531 GRVGNLGLATSFFNE 545
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 138 bits (347), Expect = 3e-32
Identities = 107/360 (29%), Positives = 167/360 (45%), Gaps = 25/360 (6%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AI +G+ TP+QASTIP+ +D+ + TG+GKT A+++P LERL+ N+
Sbjct: 171 AIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNN---- 226
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
K+ L++ PTREL +Q++ V + ++ ++ L V A +R +
Sbjct: 227 KAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQN------- 279
Query: 141 RPQILVGTPGRVLDFLQKTNVKTA-SCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
P I++ TPGR++D ++ T T S ++LDEAD++LD F + ++ I+ K R+T
Sbjct: 280 -PDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQT 338
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI---PPKDKXXXXXXXX 256
LFSAT+ + + L +I I D+
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398
Query: 257 NNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFT 316
C+V+ T + + L ++ LHG L Q R+++L F
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLL--------GVRAGELHGNLTQQQRLESLKKFK 450
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
D VL TDVAARG+DI V VI P + +IHR GRT RA R G ++ E
Sbjct: 451 EEQID-VLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGE 509
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 138 bits (347), Expect = 3e-32
Identities = 108/403 (26%), Positives = 181/403 (44%), Gaps = 56/403 (13%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERL-----IKEEAN 75
++E GF T VQ++ +P D V++S TGSGKT+A+++PIL + ++
Sbjct: 124 SLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSH 183
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
S K++ ++I++P+REL QI +E L ++ Q LVG ++ +++
Sbjct: 184 SENDKRTEIQAMIVAPSRELGMQIVREVEKLL----GPVHRRMVQQLVGGANRMRQEE-- 237
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+ N+P I+VGTPGR+ + + + T C +VLDE D+LL NF++D+ IL+ + K
Sbjct: 238 ALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGK 297
Query: 196 Q--------------RRTGLFSATIESAGAQIFKTGMR-------------------XXX 222
+ R+T L SAT+ + + K+
Sbjct: 298 RSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPV 357
Query: 223 XXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNY--RFKKCIVYFPTCISVTYFYAF 280
+ +PP K + ++C+ + AF
Sbjct: 358 MSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCV----HALDAQSVIAF 413
Query: 281 INHLKELNLIQDDLKL-----FSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGID 335
+NH ++L + L+ +HG L R L F N VL T +++ARG+D
Sbjct: 414 MNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKF-KNGEIKVLVTNELSARGLD 472
Query: 336 IPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGR 378
+ + DLV+ L+ PTDA + HR GRTGR R G + E +
Sbjct: 473 VAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQ 515
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 137 bits (346), Expect = 4e-32
Identities = 111/369 (30%), Positives = 175/369 (47%), Gaps = 25/369 (6%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
GF TP+Q IP+ N+DV+ TGSGKT+AF+IP+++++I ++ +
Sbjct: 141 GFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG------LK 194
Query: 86 SLIISPTRELASQIHDVIEDF---LKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRP 142
LIISPT+ELA+QI IE F K + + P++ LL + A +++ + S D +
Sbjct: 195 GLIISPTKELANQIF--IECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVS--DKKY 250
Query: 143 QILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR-RTGL 201
I++ TP R++D ++ + + ++ DEADKL D F + + IL + R +
Sbjct: 251 DIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAM 310
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD-KXXXXXXXXNNYR 260
FSATI S +I ++ M + I ++ K
Sbjct: 311 FSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGE 370
Query: 261 FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF-TSNL 319
FK I+ F S+T A + L + D + + +H + R + ++ F T L
Sbjct: 371 FKPPIIIFLE--SITRAKALYHEL-----MYDRINVDVIHAERTALQRDRIIERFKTGEL 423
Query: 320 TDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGRE 379
L TDV ARGID V+LVI D P + ++HR GRTGR R GKA+ F +
Sbjct: 424 W--CLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDS 481
Query: 380 EDYVPFLEV 388
P + V
Sbjct: 482 VAIKPIINV 490
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 137 bits (345), Expect = 5e-32
Identities = 113/368 (30%), Positives = 170/368 (45%), Gaps = 24/368 (6%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN-SAKFKKSHFH 85
FE +P+Q+ T P +D++ + TGSGKT+AF IP + ++K+ KK +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
L++SPTRELA QI DV+ + + P L I + G+S I S D I+
Sbjct: 194 CLVLSPTRELAVQISDVLREAGE--PCGLKSIC--VYGGSSKGPQISAIRSGVD----IV 245
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
+GTPGR+ D ++ ++ + VVLDEAD++LD+ F++ V IL K R+ +FSAT
Sbjct: 246 IGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSAT 305
Query: 206 ----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
+ + I + +D+ +
Sbjct: 306 WPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQ 365
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTD 321
K ++ F Y E L Q K S+HG R ++L F +
Sbjct: 366 KNRVLVFA-------LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEG-SC 417
Query: 322 AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF---LNEGR 378
+L TDVAARG+DIPDV++VI P + ++HR GRTGRA + G A F LN+G
Sbjct: 418 PLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGL 477
Query: 379 EEDYVPFL 386
+ V L
Sbjct: 478 AGELVNVL 485
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 137 bits (344), Expect = 6e-32
Identities = 109/363 (30%), Positives = 171/363 (47%), Gaps = 22/363 (6%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE-EANSAKFKKSHF 84
G+ TP+Q +PL D++ + TGSGKT AF++PI+ RLI + N+A +
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYP 419
Query: 85 HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQI 144
+I++PTRELA QI++ F + P+ L VG + + + I
Sbjct: 420 RCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQI--------EKGATI 471
Query: 145 LVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILK--MLPKQ--RRT 199
+VGT GR+ F ++ +K C VLDEAD+++D + F D+ETI+ +P++ R+T
Sbjct: 472 IVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQT 531
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV----IPPKDK-XXXXXX 254
+FSAT + + + +R + KDK
Sbjct: 532 LMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGI 591
Query: 255 XXNNYRFKKCI-VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLD 313
++Y +K VY + A + L + L + ++HG + + R + L
Sbjct: 592 DIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASI-LSSAQVPAITIHGAREQRERSEALR 650
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F N + VL T VA RG+DI VD VI D P + D +IHR GRTGR G+A F
Sbjct: 651 QF-RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSF 709
Query: 374 LNE 376
++E
Sbjct: 710 ISE 712
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 136 bits (343), Expect = 8e-32
Identities = 101/360 (28%), Positives = 168/360 (46%), Gaps = 28/360 (7%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-------EEANSAKF 79
F TPVQ ++P+ + +D++ + TGSGKT F+ P+L K E S
Sbjct: 162 FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQ 221
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+K++ ++I++PTRELA+QI D + F Y + V + + + + +
Sbjct: 222 RKAYPTAVIMAPTRELATQIFDEAKKFT-------YRSWVKACVVYGGSPIGNQLREI-E 273
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK---MLP-K 195
+LV TPGR+ D L++ + A+ +VLDEAD++LD+ F+ + I++ M P
Sbjct: 274 RGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVG 333
Query: 196 QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXX 255
+R+T +FSAT + + + + ++ + + +DK
Sbjct: 334 ERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDL 393
Query: 256 XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
+ +++ T F LI + + ++HG R + L +F
Sbjct: 394 LSASTDGLTLIFVETKRMADQLTDF--------LIMQNFRATAIHGDRTQSERERALAAF 445
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
S +L T VAARG+DIP+V VI D P+D D ++HR GRTGRA G A F N
Sbjct: 446 RSGAA-TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFN 504
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 136 bits (343), Expect = 8e-32
Identities = 113/396 (28%), Positives = 184/396 (45%), Gaps = 40/396 (10%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I PW+ ++++ T +Q I ++ + + TGSGKT AF +PI+E+ K+
Sbjct: 14 ISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKD- 72
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
S +LI++PTRELA QI E F + ++ L+VG +R
Sbjct: 73 -------PSGIFALILTPTRELAIQID---EQFAALGAN--LNLKHALIVG-GMDMIRQS 119
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTAS----CGTVVLDEADKLLDLNFQKDVETI 189
I+ RP ++V TPGR+ D ++ +T + +V+DEAD+LL F D++
Sbjct: 120 ID--LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDC 177
Query: 190 LKMLP--KQRRTGLFSATIESAGAQIFKTGMRXX-----XXXXXXXXXXXXXXLSINYIV 242
+LP + R+T LF+AT+ A Q+ + L +YI
Sbjct: 178 FSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIF 237
Query: 243 IPP--KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLH 300
+ ++ K I++ + Y+ + L +L++ LH
Sbjct: 238 VSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLL--------ELRVTELH 289
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
++ + R+ +L F + +L TDVA+RG+DIP V LVI D P D D +IHR GR
Sbjct: 290 SEMVQRERINSLGRFRAEAA-KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGR 348
Query: 361 TGRANRIGKALVFLNEGREEDYVPFLEVK-NVKLEE 395
T RA R G+++ + E R+ D V +E + KL E
Sbjct: 349 TARAGRSGESISIVTE-RDVDLVHAIEDRVGTKLSE 383
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 136 bits (342), Expect = 1e-31
Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 39/389 (10%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLI----------K 71
I+ G+ TPVQ ++IP+ + +D++ + TGSGKT F+ PIL +
Sbjct: 184 IKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQ 243
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ + +K++ +LI++PTREL QIH+ F Y + P A +R
Sbjct: 244 DAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC--YRSWVRPCAVY-----GGADIR 296
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
I D +L TPGR++D + + + A+ +VLDEAD++LD+ F+ + I++
Sbjct: 297 AQIRQI-DQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355
Query: 192 ----MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD 247
++R+T +FSAT + + ++ ++ + + +
Sbjct: 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE 415
Query: 248 KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL---NLIQDDLKLFSLHGKLQ 304
K + I++ +T + + + L+ + S+HG
Sbjct: 416 KRS----------YLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRT 465
Query: 305 TQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRA 364
+ R + L+ F S T +++ T VA+RG+DIP+V VI D PTD D ++HR GRTGRA
Sbjct: 466 QRERERALELFRSGRT-SIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 524
Query: 365 NRIGKALVFL---NEGREEDYVPFLEVKN 390
G+A+ F N+G ++ + L+ N
Sbjct: 525 GNTGQAVAFFNRNNKGIAKELIELLQEAN 553
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 136 bits (342), Expect = 1e-31
Identities = 105/387 (27%), Positives = 179/387 (46%), Gaps = 34/387 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+Q + I + GFE + +Q I F DV+ ++ +G+GKT F +L++L
Sbjct: 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL---- 101
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ +L+++PTRELA QI V+ Y ++ VG SVR+D
Sbjct: 102 ----DYALLQCQALVLAPTRELAQQIEKVMRALGDYQG-----VKVHACVG--GTSVRED 150
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
++VGTPGRV D L++ +++ VLDEAD++L F+ + I ++L
Sbjct: 151 -QRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
P + + G+FSAT+ +I + M + Y+ + +D
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETL 269
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSR 308
C +Y +++T F+N ++++ + D ++ + + HG + +R
Sbjct: 270 ----------CDLY--ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR 317
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ F S + VL TTD+ ARGID+ V LVI D PT + ++HR GR+GR R G
Sbjct: 318 DIIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 369 KALVFLNEGREEDYVPFLEVKNVKLEE 395
A+ F+ + + NV +EE
Sbjct: 377 VAINFVTLDDQRMLFDIQKFYNVVVEE 403
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 136 bits (342), Expect = 1e-31
Identities = 106/387 (27%), Positives = 181/387 (46%), Gaps = 33/387 (8%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
S+DD+ ++ IR + ++ TPVQ IP+ +D++ + TGSGKT AF++PI
Sbjct: 296 SFDDV--QLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353
Query: 66 LERLIK-------EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIR 118
L ++ + + +K + L+++PTRELA+QI + + F Y + P
Sbjct: 354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA--YRSRMRP-- 409
Query: 119 SQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL 178
+ L G +++ ++ D ++V TPGR+ D + + V + +VLDEAD++L
Sbjct: 410 AVLYGGNNTSEQMREL----DRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRML 465
Query: 179 DLNFQKDVETILKML----PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXX 234
D+ F+ + I++ L QR+T +FSAT ++ +
Sbjct: 466 DMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSE 525
Query: 235 XLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL 294
++ + + DK ++ R P + F+ K + +++ L
Sbjct: 526 NITQTILWVYEPDKRSYLLDLLSSIRDG------PEYTKDSLTLIFVETKKGADSLEEFL 579
Query: 295 -----KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT 349
+ S+HG + R + L F S +L T VAARG+DIP V VI D P+
Sbjct: 580 YQCNHPVTSIHGDRTQKEREEALRCFRSG-DCPILVATAVAARGLDIPHVKHVINFDLPS 638
Query: 350 DADIFIHRCGRTGRANRIGKALVFLNE 376
D + ++HR GRTGR +G A F NE
Sbjct: 639 DVEEYVHRIGRTGRMGNLGVATSFFNE 665
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 136 bits (342), Expect = 1e-31
Identities = 113/389 (29%), Positives = 181/389 (46%), Gaps = 69/389 (17%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL---------ERLIKE 72
I+ +G++ TP+Q IP+ N+D++ + TGSGKT+AF+IP+L ERL E
Sbjct: 409 IDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERL--E 466
Query: 73 EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132
+ + + ++I++PTRELA QI + F IR+ ++VG S R+
Sbjct: 467 DVDQGPY------AIIMAPTRELAQQIEEETTKF-----GQPLGIRTVVVVGGLS---RE 512
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
+ +I++ TPGR++D L+ + C +VLDEAD+++D+ F+ DV+ IL+
Sbjct: 513 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 572
Query: 193 LP-------------------------KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXX 227
+P K R+T +F+AT+ A ++ +T +R
Sbjct: 573 MPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLR-------- 624
Query: 228 XXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL 287
+ I + P + N + KK + I F+N K
Sbjct: 625 ----RPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVI-IFVNQKKGA 679
Query: 288 NLIQDDLKLF-----SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLV 342
+++ L+ +LHG + R L + S D +L TDVA RGIDI DV LV
Sbjct: 680 DVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKD-ILVATDVAGRGIDIKDVSLV 738
Query: 343 IQLDPPTDADIFIHRCGRTGRANRIGKAL 371
I D + + HR GRTGRA + G A+
Sbjct: 739 INYDMAKTIEDYTHRIGRTGRAGKTGCAI 767
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 135 bits (340), Expect = 2e-31
Identities = 111/363 (30%), Positives = 164/363 (44%), Gaps = 29/363 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL----ERLIKEEANSA 77
I GFE +P+Q+ PL +D + S TGSGKT+AF++P L +L + E N
Sbjct: 99 IRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDE 158
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137
+ K S F L++SPTRELA QI E +K Y N Y +S L G S R +
Sbjct: 159 EQKPSPF-VLVLSPTRELAQQI----EGEVKKYSYNGY--KSVCLYGGGS---RPEQVEA 208
Query: 138 TDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
+I++ TPGR+ D + AS VVLDEAD++LD+ F+ + IL + R
Sbjct: 209 CRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDR 268
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
L SAT ++ + + P D
Sbjct: 269 LVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIV 328
Query: 258 NY------RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
N+ + K I++ + + +HL + + LHG R +
Sbjct: 329 NFLTAAHGQNYKMIIFVKSKV-------MADHLSS-DFCMKGINSQGLHGGRSQSDREMS 380
Query: 312 LDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
L+ S +L TD+A+RGID+PD+ V+ D P D + ++HR GRTGRA R G+A+
Sbjct: 381 LNMLRSGEVQ-ILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAM 439
Query: 372 VFL 374
FL
Sbjct: 440 SFL 442
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 135 bits (340), Expect = 2e-31
Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 26/346 (7%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
G+E +P+Q ++I + +D++ + G+GKT A+ IP++E++ + A A
Sbjct: 62 GWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI--QPALKA------IQ 113
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
+++I PTRELA Q + + K+ I+ +++V T +RDDI + ++
Sbjct: 114 AMVIVPTRELALQTSQICVELSKH-------IQLKVMVTTGGTDLRDDIMRL-NGTVHLV 165
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
+ TPGR+LD ++K K C T+VLDEADKLL +FQ ++ ++ LPK+R+ L+SAT
Sbjct: 166 IATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSAT 225
Query: 206 IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI 265
+ + M ++ Y + K K + + I
Sbjct: 226 FPNTVTSFMQKHMH-KPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSI 284
Query: 266 VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF 325
++ C S + E+ + +H K+ R + F L
Sbjct: 285 IF---CNSTQRVELLAKKITEIG-----YSCYYIHSKMAQNHRNRVFHDFRQG-NCRNLV 335
Query: 326 TTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
+D+ RGIDI V++VI D P +A+ ++HR GR+GR +G A+
Sbjct: 336 CSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAI 381
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 135 bits (340), Expect = 2e-31
Identities = 115/395 (29%), Positives = 179/395 (45%), Gaps = 77/395 (19%)
Query: 15 QPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGK----------------- 57
+P +R A E++G++ TP+Q IP +D+ ++TGSGK
Sbjct: 176 RPLLR-ACETLGYKKPTPIQVQFIP--QEWRDLCASAITGSGKVSTRLMVLCNTEILFRY 232
Query: 58 ---TIAFVIPILERLIKEEANSAKFKKSHFHS---LIISPTRELASQIHDVIEDFLKYYP 111
T AF +P LERL+ F+ + LI++PTRELA QIH +I++ ++
Sbjct: 233 LTNTAAFALPTLERLL--------FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTD 284
Query: 112 DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKT-NVKTASCGTVV 170
I+ L+VG S ++ + + P I+V TPGR++D L+ + +V ++
Sbjct: 285 -----IKCGLIVGGLSVREQEVV---LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 336
Query: 171 LDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXX 230
LDEAD+LL F ++ ++++ PK+R+T LFSAT+ ++ K +
Sbjct: 337 LDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSA 396
Query: 231 XXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLI 290
L+ Y+ + P+C S T A H ++
Sbjct: 397 RRPPGLTEEYL----------------------REFFVPSCASGTKQAA---HRLKILFG 431
Query: 291 QDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF---------TTDVAARGIDIPDVDL 341
LK LHG L R+ + TS L LF TDVAARG+DI V
Sbjct: 432 LAGLKAAELHGNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQT 491
Query: 342 VIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
VI P + D ++HR GRT RA R G A+ F+ +
Sbjct: 492 VINYACPREIDSYVHRVGRTARAGREGYAVTFVTD 526
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 135 bits (339), Expect = 2e-31
Identities = 103/379 (27%), Positives = 183/379 (48%), Gaps = 42/379 (11%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
++DD+ ++ + I GFE + +Q I +DV+ ++ +G+GKT F I I
Sbjct: 17 NFDDMN--LREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAI 74
Query: 66 LERL---IKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLL 122
L+++ I+E +LI++PTRELA+QI V+ +Y + S
Sbjct: 75 LQQIDTSIRE-----------CQALILAPTRELATQIQRVVMALGEYMK-----VHSHAC 118
Query: 123 VGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNF 182
+G +VR+D ++ ++VGTPGRV D + + ++T VLDEAD++L F
Sbjct: 119 IG--GTNVREDAR-ILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGF 175
Query: 183 QKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV 242
+ ++ + KMLP + L SAT+ ++ + MR + Y+
Sbjct: 176 KDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVN 235
Query: 243 IPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS---- 298
+ + N++ + T +S+T F N ++++ + ++ + +
Sbjct: 236 VKQE-----------NWKLGTLCDLYDT-LSITQSVIFCNTRRKVDQLTQEMSIHNFTVS 283
Query: 299 -LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
+HG ++ + R + F S + VL TTD+ ARGID+ V LVI D P++ + +IHR
Sbjct: 284 AMHGDMEQRDREVIMKQFRSG-SSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 342
Query: 358 CGRTGRANRIGKALVFLNE 376
GR GR R G A+ F+ +
Sbjct: 343 IGRGGRFGRKGVAINFITD 361
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 134 bits (337), Expect = 4e-31
Identities = 106/372 (28%), Positives = 174/372 (46%), Gaps = 29/372 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L+++ +
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ L++ TRELA QI + F KY PD +R+ + G +++ D
Sbjct: 118 GEVSV--------LVLCHTRELAFQIKNEYARFSKYLPD----VRTAVFYG--GINIKQD 163
Query: 134 INSFTDNR--PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETIL 190
+ +F D P I+V TPGR+ +++ +K S VLDE DKLL+ ++ ++D++ +
Sbjct: 164 MEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVF 223
Query: 191 KMLPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKX 249
+ P Q++ +FSAT+ + I K M+ L +Y+ + K K
Sbjct: 224 RATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN 283
Query: 250 XXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRM 309
++ F + +++ SV+ L+E N +HG L + R+
Sbjct: 284 RKINDLLDSLEFNQVVIFVK---SVSRANELDRLLRECNFPS-----ICIHGGLPQEERI 335
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
K +F + + TDV RGIDI V++VI D P D ++HR GR GR G
Sbjct: 336 KRYKAF-KDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGL 394
Query: 370 ALVFLNEGREED 381
A+ F EED
Sbjct: 395 AITF--SSSEED 404
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 134 bits (337), Expect = 4e-31
Identities = 103/374 (27%), Positives = 176/374 (46%), Gaps = 36/374 (9%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
++DD+ ++P + I + GFE + +Q I G +DV+ ++ +G+GKT F I +
Sbjct: 20 TFDDMN--LKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+++ K+ +LI++PTRELA QI V+ +L + +G
Sbjct: 78 LQKI------DTSLKQCQ--ALILAPTRELAQQIQKVVVAL-----GDLMNVECHACIG- 123
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
VRDD+ + ++VGTPGRV D +Q+ + T + VLDEAD++L F+
Sbjct: 124 -GTLVRDDMAALQAG-VHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQ 181
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ I ++LP + L SAT+ ++ MR + Y+ +
Sbjct: 182 IYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEK 241
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELN-----LIQDDLKLFSLH 300
++ C +Y ++VT F N ++++ L + D + S+H
Sbjct: 242 EEWKLDTL----------CDLY--ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMH 289
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G + R + F + + +L TTD+ ARGID+ V LVI D P + + +IHR GR
Sbjct: 290 GDMDQAQRDTLMHEFRTG-SSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGR 348
Query: 361 TGRANRIGKALVFL 374
GR R G ++ F+
Sbjct: 349 GGRFGRKGVSINFV 362
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 134 bits (337), Expect = 4e-31
Identities = 112/418 (26%), Positives = 196/418 (46%), Gaps = 40/418 (9%)
Query: 4 SLSWDDLK-----------------CEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKD 46
+++WDDLK + P + I+ GF+ TP+Q+ P+ D
Sbjct: 222 NITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGID 281
Query: 47 VVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDF 106
++ + TG+GKT+ +++P L+ + S K +++ L+++PTRELA Q+ +
Sbjct: 282 LIGVAQTGTGKTLCYLMPGFIHLVLQP--SLKGQRNRPGMLVLTPTRELALQVEG---EC 336
Query: 107 LKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASC 166
KY L RS + G + RD+ I++ TPGR+ D V +
Sbjct: 337 CKYSYKGL---RSVCVYGGGN---RDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNI 390
Query: 167 GTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXX 225
+VLDEADK+LD+ F+ + IL + R+T + SAT + ++ ++ ++
Sbjct: 391 TYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYV 450
Query: 226 XXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLK 285
+ N IV ++K + ++ F + +V +HL
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVA------DHLS 504
Query: 286 ELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQL 345
+LI ++ + SLHG + + R K L++F + +L TD+A+RG+D+ DV V
Sbjct: 505 S-DLILGNISVESLHGDREQRDREKALENFKTGKV-RILIATDLASRGLDVHDVTHVYNF 562
Query: 346 DPPTDADIFIHRCGRTGRANRIGKALVFL--NEGR-EEDYVPFLEVKNVKLEEESVEL 400
D P + + ++HR GRTGRA R G ++ L N+ R + + LE N + EE V +
Sbjct: 563 DFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSM 620
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 134 bits (337), Expect = 4e-31
Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 26/346 (7%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
G+E +P+Q + IP+ KDV+ + G+GKT A+ IP+LE++ K +
Sbjct: 76 GWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPT--------KDYIQ 127
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
+L++ PTRELA Q + + K+ + +++V T ++DDI + Q++
Sbjct: 128 ALVMVPTRELALQTSQICIELAKH-------LDIRVMVTTGGTILKDDILRIYQ-KVQLI 179
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
+ TPGR+LD + K + C +VLDEADKLL L+FQ ++ ++ LPK + LFSAT
Sbjct: 180 IATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSAT 239
Query: 206 IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI 265
+ +R ++ Y + + K + + + I
Sbjct: 240 FPLTVKNFMEKHLR-EPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI 298
Query: 266 VYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF 325
++ C S + EL + +H K+ R + F L L
Sbjct: 299 IF---CNSTQRVELLAKKITELGYC-----CYYIHAKMAQAHRNRVFHDFRQGLC-RNLV 349
Query: 326 TTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
+D+ RGID+ V++VI D P A+ ++HR GR+GR +G A+
Sbjct: 350 CSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAI 395
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 134 bits (336), Expect = 5e-31
Identities = 114/381 (29%), Positives = 178/381 (45%), Gaps = 41/381 (10%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVI 63
S+D+L + P + I +M F+ + +Q +PL N ++++ +S +G+GKT AF +
Sbjct: 93 SFDELG--LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 150
Query: 64 PILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLV 123
+L R+ E+A+ ++ ++P+RELA Q +V+++ K+ I SQL+V
Sbjct: 151 TMLTRVNPEDASP--------QAICLAPSRELARQTLEVVQEMGKFTK-----ITSQLIV 197
Query: 124 GTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQ 183
S IN+ Q++VGTPG VLD +++ ++ VLDEAD +LD
Sbjct: 198 -PDSFEKNKQINA------QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL 250
Query: 184 KD-VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV 242
D + + LPK + LFSAT A Q K + + Y+
Sbjct: 251 GDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD 310
Query: 243 IPPK-DKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
+ DK I++ T + Y L + ++ LHG
Sbjct: 311 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYG--------KLKSEGHEVSILHG 362
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT------DADIFI 355
LQTQ R + +D F VL TT+V ARGIDIP V +V+ D PT D +I
Sbjct: 363 DLQTQERDRLIDDFREG-RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYI 421
Query: 356 HRCGRTGRANRIGKALVFLNE 376
HR GRTGR R G A+ F+++
Sbjct: 422 HRIGRTGRFGRKGVAISFVHD 442
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 134 bits (336), Expect = 5e-31
Identities = 102/363 (28%), Positives = 168/363 (46%), Gaps = 29/363 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I G+ +TPVQ +IP+ +D++ + TGSGKT AF++PIL ++ + +++FK+
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 362
Query: 82 -SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
+I++PTREL +QI+ F I +G S + N
Sbjct: 363 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN----- 417
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM--LP--KQ 196
IL TPGR++D + K + +VLDEAD++LD+ F +++ ++ +P +Q
Sbjct: 418 ---ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQ 474
Query: 197 RRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
R+T +FSAT I+ A+ K+ + + + K
Sbjct: 475 RQTLMFSATFPEEIQRLAAEFLKSN---YLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 531
Query: 253 XXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312
N ++ +V+ T + F L Q+ + S+HG + + R + L
Sbjct: 532 VEILRNIGDERTMVFVETKKKADFIATF--------LCQEKISTTSIHGDREQREREQAL 583
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
F VL T VAARG+DI +V VI D P+ D ++HR GRTGR G+A+
Sbjct: 584 GDFRFGKC-PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAIS 642
Query: 373 FLN 375
F +
Sbjct: 643 FFD 645
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 133 bits (335), Expect = 7e-31
Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 35/392 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L+++
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ +L++ TRELA QI + F Y PD + + G + + D
Sbjct: 113 GQVS--------ALVLCHTRELAYQICNEFVRFSTYLPDT----KVSVFYGGVNIKIHKD 160
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
+ + P I+VGTPGRVL ++ ++ + +LDE DK+L+ L+ ++DV+ I KM
Sbjct: 161 L--LKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P ++ +FSAT+ + K M+ L +YI + +K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRK 278
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELN--LIQDDLKLFSLHGKLQTQSRM 309
+ F + +++ + ++ ELN L++ + +H + + R+
Sbjct: 279 LNDLLDALDFNQVVIFVKS----------VSRAAELNKLLVECNFPSICIHSGMSQEERL 328
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
SF +L TD+ RGIDI V++VI D P AD ++HR GR GR G
Sbjct: 329 TRYKSFKEG-HKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
Query: 370 ALVFLNEGREEDYVPFLEVKNVKLEEESVELK 401
A+ F+ + EV N E V++K
Sbjct: 388 AITFVASASDS------EVLNQVQERFEVDIK 413
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 133 bits (334), Expect = 9e-31
Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 35/392 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L+++
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ +L++ TRELA QI + F Y PD + + G + + D
Sbjct: 113 GQVS--------ALVLCHTRELAYQICNEFVRFSTYLPDT----KVSVFYGGVNIKIHKD 160
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
+ + P I+VGTPGRVL ++ ++ + +LDE DK+L+ L+ ++DV+ I KM
Sbjct: 161 L--LKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P ++ +FSAT+ + K M+ L +YI + +K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRK 278
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELN--LIQDDLKLFSLHGKLQTQSRM 309
+ F + +++ + ++ ELN L++ + +H + + R+
Sbjct: 279 LNDLLDALDFNQVVIFVKS----------VSRAAELNKLLVECNFPSICIHSGMSQEERL 328
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
SF +L TD+ RGIDI V++VI D P AD ++HR GR GR G
Sbjct: 329 TRYKSFKEG-HKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
Query: 370 ALVFLNEGREEDYVPFLEVKNVKLEEESVELK 401
A+ F+ + EV N E V++K
Sbjct: 388 AITFVASASDS------EVLNQVQERFEVDIK 413
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 132 bits (333), Expect = 1e-30
Identities = 111/389 (28%), Positives = 176/389 (44%), Gaps = 56/389 (14%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P + ++ GF P+Q+ IP S D++ ++ TGSGKT+AF IPILE ++
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR-- 186
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ +L+++PTRELA QI E +K P+ IR + G + +
Sbjct: 187 ----NVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPN----IRVMSITGGLAVQKQQR 237
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNV----KTASCGTVVLDEADKLLDLNFQKDVETI 189
+ + P ++V TPGR+ + + N+ K C +VLDEAD+LL + +++ +
Sbjct: 238 L---LNKHPHVVVATPGRLWSVINENNLTGNFKKIKC--LVLDEADRLLQKSHFEELSKL 292
Query: 190 LKMLPK----QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXX----------------- 228
L++L QR+T +FSAT + Q K M+
Sbjct: 293 LEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKF 352
Query: 229 -----XXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINH 283
+ I P +K Y K +V+ + F+N
Sbjct: 353 LDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYP-GKTMVFANGIEDIKRITPFLNE 411
Query: 284 LKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVI 343
LK + + LH +L + R+++L+ F +N VL TDVAARGIDIP V VI
Sbjct: 412 LK--------VPSYPLHAQLDQKKRLQSLEKFKNN-PKGVLVCTDVAARGIDIPSVTHVI 462
Query: 344 QLDPPTDADIFIHRCGRTGRANRIGKALV 372
P AD+++HR GRT RAN G +++
Sbjct: 463 HYHVPHTADMYVHRSGRTARANEDGVSIL 491
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 132 bits (333), Expect = 1e-30
Identities = 101/366 (27%), Positives = 166/366 (44%), Gaps = 23/366 (6%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHS 86
F+ T +Q+ + P+ +D++ + TGSGKT+AF++P L + K+ + + +
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQ---AHRQRGEGPAV 205
Query: 87 LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILV 146
L++ PTRELA Q+ +V DF +L + L G S D+ D I+V
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCH----SLGLKMTCLFGGASKGPQARDLERGVD----IVV 257
Query: 147 GTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATI 206
TPGR+LDFL C +VLDEAD++LD+ F+ ++ I+ + R+T +FSAT
Sbjct: 258 ATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATW 317
Query: 207 ESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIV 266
+ L+ N+ + D I+
Sbjct: 318 PKE-----VRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIM 372
Query: 267 YFPTCISVTYFYAFINHLKELN--LIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVL 324
C ++ F EL + +D +HG R L F + T ++
Sbjct: 373 NQKECKTI-IFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT-PIM 430
Query: 325 FTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL---NEGREED 381
TDVAARG+D+ D+ VI D P +++ ++HR GRTGR+++ G A F N + +D
Sbjct: 431 LATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKD 490
Query: 382 YVPFLE 387
+ L+
Sbjct: 491 LLKVLD 496
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 132 bits (333), Expect = 1e-30
Identities = 107/395 (27%), Positives = 176/395 (44%), Gaps = 36/395 (9%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + + S GF TP+QA + P+ +D+V + TGSGKT+ ++IP L + N
Sbjct: 167 PELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL-QRIRN 225
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
++ + L++SPTRELA+QI E+ +K+ + +RD
Sbjct: 226 DSRMGPT---ILVLSPTRELATQIQ---EEAVKFGRSSRISCTCLYGGAPKGPQLRD--- 276
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+ I+V TPGR+ D L+ + +VLDEAD++LD+ F+ + I+K +P
Sbjct: 277 --LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPT 334
Query: 196 QRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
+R+T +++AT + A + + I +V P + +
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIE-VVAPMEKQRRL 393
Query: 252 XXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSR 308
+ K I++ T C +T NL + ++HG R
Sbjct: 394 EQILRSQEPGSKVIIFCSTKRMCDQLT-----------RNLTR-QFGAAAIHGDKSQPER 441
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
L+ F S T VL TDVAARG+D+ D+ V+ D P + ++HR GRTGRA G
Sbjct: 442 DNVLNQFRSGRT-PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATG 500
Query: 369 KALVFLNE---GREEDYVPFLEVKNVKLEEESVEL 400
+A F + D + LE N ++ + E+
Sbjct: 501 QAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 132 bits (332), Expect = 1e-30
Identities = 107/377 (28%), Positives = 177/377 (46%), Gaps = 37/377 (9%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQA-STIPLFSGNKDVVVESVTGSGKTIAFVIP 64
++DD+ ++ + I + GFE + +Q + IP G DV+ ++ +G+GKT F I
Sbjct: 34 NFDDMN--LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGY-DVIAQAQSGTGKTATFAIS 90
Query: 65 ILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG 124
IL++L +FK++ +L+++PTRELA QI VI Y +
Sbjct: 91 ILQQL------EIEFKETQ--ALVLAPTRELAQQIQKVILALGDYMGATCHAC------- 135
Query: 125 TSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQK 184
+VR+++ P I+VGTPGRV D L + + VLDEAD++L F+
Sbjct: 136 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKD 195
Query: 185 DVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIP 244
+ I + L + SAT+ + ++ K MR + YI +
Sbjct: 196 QIYEIFQKLNTSIQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVE 255
Query: 245 PKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQD-----DLKLFSL 299
++ C +Y +++T F+N ++++ + + D + +L
Sbjct: 256 REEWKLDTL----------CDLY--ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL 303
Query: 300 HGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCG 359
HG + + R + F S + VL TTD+ ARGID+ V LVI D PT+ + +IHR G
Sbjct: 304 HGDMDQKERDVIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 362
Query: 360 RTGRANRIGKALVFLNE 376
R GR R G A+ F+ E
Sbjct: 363 RGGRFGRKGVAINFVTE 379
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 132 bits (331), Expect = 2e-30
Identities = 106/395 (26%), Positives = 174/395 (43%), Gaps = 35/395 (8%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
S+DD+ + + I + GFE + +Q I DV+ ++ +G+GKT F I I
Sbjct: 33 SFDDMN--LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 90
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+++ + +L+++PTRELA QI V+ Y + +
Sbjct: 91 LQQI--------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHAC-------I 135
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
+VR ++ P I+VGTPGRV D L + + VLDEAD++L F+
Sbjct: 136 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQ 195
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ I + L + L SAT+ S ++ K MR + YI +
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER 255
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQD-----DLKLFSLH 300
++ C +Y +++T FIN ++++ + + D + ++H
Sbjct: 256 EEWKLDTL----------CDLY--ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G + + R + F S + VL TTD+ ARGID+ V LVI D PT+ + +IHR GR
Sbjct: 304 GDMDQKERDVIMREFRSG-SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 362
Query: 361 TGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEE 395
GR R G A+ + E + N +EE
Sbjct: 363 GGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 397
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 131 bits (330), Expect = 3e-30
Identities = 101/392 (25%), Positives = 182/392 (45%), Gaps = 27/392 (6%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ TIP DV+ ++ +G GKT FV+ L++L
Sbjct: 69 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 128
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
A ++I RELA QI + F KY PD +++ + G + S +
Sbjct: 129 GEVAV--------VVICNARELAYQIRNEYLRFSKYMPD----VKTAVFYGGTPISKDAE 176
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
+ D P I+V TPGR+ +++ + + V+DE DK+L+ L+ ++DV+ I +
Sbjct: 177 LLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRA 236
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P+ ++ +FSAT+ I + ++ L YI + ++K
Sbjct: 237 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRK 296
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
++ F + I++ + N L +L L + ++HG ++ + R+
Sbjct: 297 LAQLLDDLEFNQVIIFVKSTTRA-------NELTKL-LNASNFPAITVHGHMKQEERIAR 348
Query: 312 LDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
+F + + +TDV RGIDI ++L I D +AD ++HR GR GR G A+
Sbjct: 349 YKAF-KDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAI 407
Query: 372 VFLNEGREEDYVPFL----EVKNVKLEEESVE 399
F++ +E+ + + +VK + EE ++
Sbjct: 408 SFVSSKEDEEVLAKIQERFDVKIAEFPEEGID 439
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 131 bits (329), Expect = 3e-30
Identities = 99/367 (26%), Positives = 167/367 (44%), Gaps = 29/367 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P I AI GFE + VQ IP DVV ++ +G GKT FVI L++L +
Sbjct: 48 LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 107
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ H TRELA QI E F KY P ++ V +++ D
Sbjct: 108 GEVSVVCMCH--------TRELAFQISKEYERFSKYLPG------VKVAVFFGGMAIKKD 153
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL-DLNFQKDVETILKM 192
++ P I+VGTPGR+L + +K VLDE DK++ D + ++DV+ I+KM
Sbjct: 154 EERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKM 213
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P+Q++ +FSAT+ + K M+ L +Y+ + +K
Sbjct: 214 TPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRR 273
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELN--LIQDDLKLFSLHGKLQTQSRM 309
+ F + ++ F + + L+ L + + ++H ++ + R+
Sbjct: 274 LLNLLDALEFNQVVI----------FVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERL 323
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGK 369
+F + +L TD+ RG+DI V++V D P D+D ++HR R GR G
Sbjct: 324 SRYQAF-KDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGL 382
Query: 370 ALVFLNE 376
A+ F+++
Sbjct: 383 AITFVSD 389
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 131 bits (329), Expect = 3e-30
Identities = 109/380 (28%), Positives = 174/380 (45%), Gaps = 34/380 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIP--ILERLIK 71
+ P I + S GF + TP+QA T P+ ++D+V + TGSGKT+ ++IP IL R +
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCR 501
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
++ + LI++PTRELA+QI D + L++ + L G
Sbjct: 502 NDSRNGPTV------LILAPTRELATQIQD---EALRFGRSSRISCTC-LYGGAPKGPQL 551
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
++ D I+V TPGR+ D L+ + +VLDEAD++LD+ F+ + I+
Sbjct: 552 KELERGAD----IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVN 607
Query: 192 MLPKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD 247
+P +R+T +++AT + + + ++ + V+P +
Sbjct: 608 EIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVE--VVPQME 665
Query: 248 KXXXXXXXXNNY-RFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQ 306
K + R K I++ T +HL + +HG
Sbjct: 666 KERRLEQILRSQERGSKVIIFCST-------KRLCDHL--ARSVGRHFGAVVIHGDKTQG 716
Query: 307 SRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANR 366
R L+ F S VL TDVAARG+DI D+ +VI D PT + ++HR GRTGRA
Sbjct: 717 ERDWVLNQFRSG-KSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGA 775
Query: 367 IGKALVFLNEGREEDYVPFL 386
G A F E ++ Y P L
Sbjct: 776 TGVAFTFFTE-QDWKYAPDL 794
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 131 bits (329), Expect = 3e-30
Identities = 110/377 (29%), Positives = 169/377 (44%), Gaps = 41/377 (10%)
Query: 12 CEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK 71
C I +AI+ +E T +Q +P+ +DV+ + TGSGKT AFV+P++ ++
Sbjct: 233 CGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMD 292
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ + +I +PTRELA QI + F K Y +R + G S
Sbjct: 293 QPELQ---RDEGPIGVICAPTRELAHQIFLEAKKFSK-----AYGLRVSAVYGGMSKH-- 342
Query: 132 DDINSFTDNRP--QILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETI 189
F + + +I+V TPGR++D L+ + +VLDEAD++ DL F+ V +I
Sbjct: 343 ---EQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSI 399
Query: 190 LKMLPKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ + R+T LFSAT +E +I +R ++ VIP
Sbjct: 400 VGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVN----VIP- 454
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLK-----ELNLIQDDLKLFSLH 300
+ + + P I F + E L + K+ +LH
Sbjct: 455 ----------SDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALH 504
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
G SRM+TL F S + VL TDVAARG+DI + V+ D D D+ +HR GR
Sbjct: 505 GDKDQASRMETLQKFKSGV-HHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGR 563
Query: 361 TGRA-NRIGKALVFLNE 376
TGRA +R G A + +
Sbjct: 564 TGRAGDRDGVAYTLVTQ 580
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 130 bits (327), Expect = 6e-30
Identities = 97/350 (27%), Positives = 158/350 (44%), Gaps = 32/350 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I GFE +P+Q +IP+ +D++ + G+GKT AF IP+LE+ I ++ N +
Sbjct: 146 IYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK-IDQDNNVIQ--- 201
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ ++ T ++ ++ ++ Q++V T S++DDI
Sbjct: 202 ---GNCVLDHTSQVCKELGK--------------HLKIQVMVTTGGTSLKDDIMRLYQP- 243
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
+LVGTPGR+LD +K C +V+DEADKLL FQ VE ++ LP+ R+ +
Sbjct: 244 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM 303
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
FSAT + FK ++ Y + + K + +
Sbjct: 304 FSATF-PVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQI 362
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTD 321
+ I++ C SV + EL F +H K+ R + F N
Sbjct: 363 NQSIIF---CNSVNRVELLAKKITELG-----YSCFYIHAKMLQDHRNRVFHDF-RNGAC 413
Query: 322 AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
L TD+ RGIDI V++VI D P +A+ ++HR GR+GR +G A+
Sbjct: 414 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAV 463
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 130 bits (326), Expect = 7e-30
Identities = 107/382 (28%), Positives = 174/382 (45%), Gaps = 52/382 (13%)
Query: 11 KCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIP----IL 66
+C + + +GFE TP+Q IP +D++ + TGSGKT+AF++P IL
Sbjct: 514 QCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL 573
Query: 67 ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
++ E+ + A ++I++PTREL QI I F K L P+ G S
Sbjct: 574 DQPSMEDGDGA-------IAIIMAPTRELCMQIGKDIRKFSKSL--GLRPVCVYGGTGIS 624
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFL-----QKTNVKTASCGTVVLDEADKLLDLN 181
+I+V TPGR++D L + TN++ + VVLDEAD++ D+
Sbjct: 625 EQIAE------LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVT--YVVLDEADRMFDMG 676
Query: 182 FQKDVETILKMLPKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLS 237
F+ V I+ + R+T +FSAT +E+ +I K + +
Sbjct: 677 FEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIE----------------VI 720
Query: 238 INYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL--- 294
+ + K+ ++ +F K + F++ + +++ DL
Sbjct: 721 VGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKA 780
Query: 295 --KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDAD 352
SLHG + R T+ F S +L T VAARG+D+ D+ LV+ D P +
Sbjct: 781 SYPCMSLHGGIDQFDRDSTIIDFKSGKV-RLLIATSVAARGLDVKDLILVVNYDVPNHYE 839
Query: 353 IFIHRCGRTGRANRIGKALVFL 374
++HRCGRTGRA + G A F+
Sbjct: 840 DYVHRCGRTGRAGKKGSAYTFI 861
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 129 bits (325), Expect = 1e-29
Identities = 102/374 (27%), Positives = 170/374 (45%), Gaps = 31/374 (8%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+ G++ TP+Q +IP+ S +D++ + TGSGKT AF++PIL +L+++ + +
Sbjct: 260 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED---PHELEL 316
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT--SSASVRDDINSFTD 139
+I+SPTRELA QI + F S L +G S R N
Sbjct: 317 GRPQVVIVSPTRELAIQIFNEARKF---------AFESYLKIGIVYGGTSFRHQ-NECIT 366
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK--MLPKQR 197
+++ TPGR+LDF+ +T + VVLDEAD++LD+ F +D+ I+ + +
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
+T +FSAT ++ ++ + + K +
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILS 486
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+ IV+ T + +F++ + + S+HG R + L F
Sbjct: 487 E-QADGTIVFVETKRGADFLASFLS--------EKEFPTTSIHGDRLQSQREQALRDF-K 536
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
N + VL T VA+RG+DI ++ VI D P+ D ++HR GRTGR G+A F +
Sbjct: 537 NGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 596
Query: 378 REE----DYVPFLE 387
++ D V LE
Sbjct: 597 KDRAIAADLVKILE 610
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 129 bits (324), Expect = 1e-29
Identities = 93/361 (25%), Positives = 173/361 (47%), Gaps = 40/361 (11%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I + GFE + +Q I +DV+ +S +G+GKT F I +L+ L +
Sbjct: 53 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL--------DIQV 104
Query: 82 SHFHSLIISPTRELASQIHD---VIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFT 138
+LI++PTRELA QI + D++ ++ +G +V +DI
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYMN--------VQCHACIG--GTNVGEDIRKL- 153
Query: 139 DNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRR 198
D ++ GTPGRV D +++ +++T + +VLDEAD++L+ F++ + + + LP +
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 213
Query: 199 TGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNN 258
L SAT+ ++ M + ++ + ++
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE----------- 262
Query: 259 YRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLD 313
++F + T +++T F N ++++ + + ++ + S+HG + + R +
Sbjct: 263 WKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
F S VL +TDV ARG+D+P V L+I D P + +++IHR GR+GR R G A+ F
Sbjct: 322 EFRSG-ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 380
Query: 374 L 374
+
Sbjct: 381 V 381
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 129 bits (324), Expect = 1e-29
Identities = 95/379 (25%), Positives = 174/379 (45%), Gaps = 28/379 (7%)
Query: 2 SKSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAF 61
++ + W+ L + P + I +G++ +PVQ ++IP G K+++V S G+GKT ++
Sbjct: 105 TEGIGWESLG--LGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASY 162
Query: 62 VIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQL 121
++P+L + E + +I+ P RELA QI + K + I + +
Sbjct: 163 IVPMLNMINSSELS--------IQGIILVPIRELALQISRNV----KRMSEGTGVISAPV 210
Query: 122 LVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLN 181
+ GTS ++DDI + N ++VGTPGR++D ++K + +V DEADKLLD+
Sbjct: 211 VGGTS---MQDDIIRVS-NGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVT 266
Query: 182 FQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI 241
F + V +L +LP++++ L+SAT + M+ Y
Sbjct: 267 FGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRYMKNPLCINLMKELAPVGVKQF-YT 325
Query: 242 VIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHG 301
+ P +K +C+++ + +V L + + + L + +H
Sbjct: 326 YVKPSEKLLCLKSLLLRLSINQCVIFCNSIKTV--------ELLAMKITEMGLPSYFIHS 377
Query: 302 KLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRT 361
K+ + R +F +L TD+ RG+D P+ + VI D + ++HR GR
Sbjct: 378 KMAQEDRNIVFHNFLKGKC-KILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRA 436
Query: 362 GRANRIGKALVFLNEGREE 380
GR G A+ + +E
Sbjct: 437 GRFGAPGVAISLVTTEEKE 455
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 129 bits (323), Expect = 2e-29
Identities = 93/368 (25%), Positives = 166/368 (44%), Gaps = 30/368 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P I AI GFE + VQ IP D++ ++ +G GKT FV+ L++L +
Sbjct: 48 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSD 107
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
N+ H L++ TRELA QI E F KY P ++ V +++ D
Sbjct: 108 NNTC-------HVLVMCHTRELAFQISKEYERFSKYMPT------VKVAVFFGGMAIQKD 154
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
+ P I+VGTPGR+L ++ + VLDE DK+L+ L+ ++DV+ I +
Sbjct: 155 EETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRS 214
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P ++ +FSAT+ + K M+ L +Y+ + +K
Sbjct: 215 TPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKK 274
Query: 252 XXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSR 308
+ F + +++ + C++++ L + + +H + + R
Sbjct: 275 LFELLDVLEFNQVVIFVKSVQRCVALSQL-----------LTEQNFPAIGIHRGMTQEER 323
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ F + +L T++ RG+DI V++V D P D+D ++HR R GR G
Sbjct: 324 LNRYQQF-KDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 382
Query: 369 KALVFLNE 376
A+ F+++
Sbjct: 383 LAITFVSD 390
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 129 bits (323), Expect = 2e-29
Identities = 101/366 (27%), Positives = 164/366 (44%), Gaps = 37/366 (10%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
++ GF T +Q+ P+ +D+V + TGSGKT+A+++P + + N +
Sbjct: 252 MKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHI----GNQPPIIR 307
Query: 82 SHFH-SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA--SVRDDINSFT 138
+L+++PTRELA QI V+ D+ IR + G SS RD
Sbjct: 308 GEGPIALVLAPTRELAQQIQSVVRDYGHLCKPE---IRHTCIFGGSSKVPQARD-----L 359
Query: 139 DNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRR 198
D ++++ TPGR++DFL+ N C +VLDEAD++LD+ F+ + I++ + R+
Sbjct: 360 DRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 419
Query: 199 TGLFSATIES-----AG------AQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD 247
++SAT AG QI M + ++ +
Sbjct: 420 VVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLN 479
Query: 248 KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQS 307
+ NN K IV+ T I V I + S+HG
Sbjct: 480 EISPIKNSGNN--GNKIIVFVETKIKVEDILQIIR--------AEGYNATSIHGDKTQNE 529
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R L F + ++ +L TDVA+RG+D+ D+ VI D P ++ ++HR GRTGR ++
Sbjct: 530 RDSVLKDFRNGKSN-ILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQL 588
Query: 368 GKALVF 373
G A F
Sbjct: 589 GTAYTF 594
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 128 bits (322), Expect = 2e-29
Identities = 106/399 (26%), Positives = 175/399 (43%), Gaps = 44/399 (11%)
Query: 4 SLSWDDLKCEIQPWIRTAIES--------MGFETMTPVQASTIPLFSGNKDVVVESVTGS 55
S+ DDL ++ W + S + ++ + +Q + IP+ KD++ + TGS
Sbjct: 238 SIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGS 297
Query: 56 GKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLY 115
GKT AF+IP++ + K + ++++++PTRELA QI F +
Sbjct: 298 GKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAE------- 350
Query: 116 PIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEAD 175
P+ + + + + + I+V TPGR+LD L++ + C VV+DEAD
Sbjct: 351 PLGFRCVSVVGGHAFEEQSFQMSQGA-HIVVATPGRLLDCLERRLFVLSQCTYVVMDEAD 409
Query: 176 KLLDLNFQKDVETILKMLP-------------------KQRRTGLFSATIESAGAQIFKT 216
++LD+ F+ DV IL LP +R+T +FSAT+ A + K+
Sbjct: 410 RMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKS 469
Query: 217 GMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKX-XXXXXXXNNYRFKKCIVYFPTCISVT 275
+ + +I K + RF I+ F
Sbjct: 470 YLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNI 529
Query: 276 YFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGID 335
A K+LN I +LHG + R + ++ + D +L TD+A RGID
Sbjct: 530 EAIA-----KQLNAI--GWHAVTLHGSKSQEQRERAIEQLRNKTAD-ILVATDIAGRGID 581
Query: 336 IPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
IP+V LV+ + + + HR GRTGRA + G A+ FL
Sbjct: 582 IPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 128 bits (322), Expect = 2e-29
Identities = 109/405 (26%), Positives = 182/405 (44%), Gaps = 35/405 (8%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
SW ++C I I +++ G+E TP+Q IP +D++ + TGSGKTIAF++P+
Sbjct: 373 SW--VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
++ + + + ++I++PTRELA QI + F K + + +
Sbjct: 431 FRHIMDQRSLE---EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISE 487
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFL-----QKTNVKTASCGTVVLDEADKLLDL 180
A ++ +I+V TPGR++D L + TN++ + VVLDEAD++ D+
Sbjct: 488 QIAELK--------RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY--VVLDEADRMFDM 537
Query: 181 NFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINY 240
F+ V I+ + R+T +FSAT A + + + +
Sbjct: 538 GFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV 597
Query: 241 IVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL--NLIQDDLKLFS 298
IVI + K +Y+ SV F H L +L++ S
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESG---------SVIIFVDKQEHADGLLKDLMRASYPCMS 648
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LHG + R ++ F N T +L T VAARG+D+ + LV+ P + ++HR
Sbjct: 649 LHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRA 707
Query: 359 GRTGRANRIGKALVFLNEGREE---DYVPFLEVKNVKLEEESVEL 400
GRTGRA G A F+ E + D + LE+ + + +L
Sbjct: 708 GRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 128 bits (321), Expect = 3e-29
Identities = 125/441 (28%), Positives = 196/441 (44%), Gaps = 77/441 (17%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I +++++ F T +Q +IP+ DV+ ++ TGSGKT+A+ IPI+E+LI S
Sbjct: 182 ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISN--FSQ 239
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLK-YYPDNLYPIRSQLLVGTSSASVRDDINS 136
K KK SLI +PTRELA Q+ D ++ + + Y I S L G S + +
Sbjct: 240 KNKKP--ISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILS--LTGGLSIQKQQRLLK 295
Query: 137 FTDNRPQILVGTPGRVLDFLQKTNV---KTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+ DN QI++ TPGR L+ L+K N + + T++LDEAD+LL + E I+K L
Sbjct: 296 Y-DNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHL 354
Query: 194 PKQRR--------------TGLFSATIE-------SAGAQIFKTGMRXXXXXXXXXXXXX 232
+RR T +FSAT S+ Q+ +
Sbjct: 355 LVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHL 414
Query: 233 XXXLSIN----YIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAF-------- 280
+ N I P+ K + K+ ++ P Y Y F
Sbjct: 415 MSKIHFNSKPVIIDTNPESKVSS--------QIKESLIECPPLERDLYCYYFLTMFPGTT 466
Query: 281 ------INHLKELNLIQDDLKL--FSLHGKLQTQSRMKTLDSF---------------TS 317
I+ +K+L + ++L + F +H + ++R+K+L+ F S
Sbjct: 467 LIFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDS 526
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
VL +DVAARG+DIP V VI P DI+IHR GRT RA G + + +
Sbjct: 527 VQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSP- 585
Query: 378 REEDYVPFLEVKNVKLEEESV 398
+E P +++ + SV
Sbjct: 586 -QESMGPLRKLRKTLATKNSV 605
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 128 bits (321), Expect = 3e-29
Identities = 106/386 (27%), Positives = 169/386 (43%), Gaps = 30/386 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+ S GF +P+QA + P+ N+D+V + TGSGKT+ ++IP L + +S
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
L++SPTRELA+QI + LK+ + L G +I D
Sbjct: 304 I----LVLSPTRELATQIQ---VEALKFGKSSKISCAC-LYGGAPKGPQLKEIERGVD-- 353
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
I+V TPGR+ D L+ + +VLDEAD++LD+ F+ + I+ +P +R+T +
Sbjct: 354 --IVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLM 411
Query: 202 FSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
++AT + A + + +I V+ P +K
Sbjct: 412 YTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSRLEQILR 469
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+ I+ F C + +L ++HG R L+ F S
Sbjct: 470 SQEPGSKIIIF--CSTKRMCDQLARNLTR------TFGAAAIHGDKSQAERDDVLNQFRS 521
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE- 376
T VL TDVAARG+D+ D+ +V+ D P + ++HR GRTGRA G A F +
Sbjct: 522 GRT-PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQ 580
Query: 377 --GREEDYVPFLEVKNVKLEEESVEL 400
D + LE N K+ + E+
Sbjct: 581 DAKHASDLIKILEGANQKVPPQVREM 606
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 128 bits (321), Expect = 3e-29
Identities = 118/467 (25%), Positives = 210/467 (44%), Gaps = 91/467 (19%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQAS--TIPLFSGNKDVVVESVTGSGKTIAFVI 63
+W ++ + P + +I + F+ T +Q + + + G KDV+ + TGSGKT+AF +
Sbjct: 192 AWSSMR--LHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG-KDVIGAAETGSGKTLAFGL 248
Query: 64 PILERLIKEEANSAKF------------KKSHFHSLIISPTRELASQIHDVIEDFLKYYP 111
PIL+RL+ E K + +LII+PTRELA Q+ + +E+ K
Sbjct: 249 PILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLS 308
Query: 112 DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFL---QKTNVKTASCGT 168
+ PI + +++ +P+I+V TPGR+ + + +K V+ S
Sbjct: 309 VKVVPIVGGMFSEKQERRLKE--------KPEIVVATPGRLWELMSAGEKHLVELHSLSF 360
Query: 169 VVLDEADKLLDLNFQKDVETILKMLP------------------------KQRRTGLFSA 204
VLDEAD++++ +++++IL +LP K+R+T +FSA
Sbjct: 361 FVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSA 420
Query: 205 TI------------------ESAGAQI-------FKTGMRXXXXXXXXXXXXXXX-XLSI 238
TI +S+ ++ + GMR +
Sbjct: 421 TIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEE 480
Query: 239 NYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
++I K+K + + + IV+ C SVT LK L L D LFS
Sbjct: 481 SFIKCEEKEKDAYLYYILSVHGQGRTIVF---CTSVTDLRHISGLLKILGL--DVCTLFS 535
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
+++ ++R+K++D F ++ + +L TD+ ARGIDI +V +I P A++++HRC
Sbjct: 536 ---EMKQRARLKSIDRFRAS-ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRC 591
Query: 359 GRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVEN 405
GRT RA G ++ + + + ESV++ ++N
Sbjct: 592 GRTARAFADGCSIALIEPNETSKFYTLCK----SFSMESVKIFPLDN 634
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 127 bits (319), Expect = 5e-29
Identities = 97/358 (27%), Positives = 170/358 (47%), Gaps = 34/358 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I + G+ET + VQ+ I +DV+ ++ +G+GKT F I IL+ S
Sbjct: 36 IYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ--------SIDLSV 87
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELA QI +V+ + ++ +G SV +DI D
Sbjct: 88 RDTQALILSPTRELAVQIQNVVLALGDHMN-----VQCHACIG--GTSVGNDIKKL-DYG 139
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
++ GTPGRV D +++ N++T + ++LDEAD+LL+ F++ + I + LP + +
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
SAT+ ++ L +I + ++ ++F
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEE-----------WKF 248
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLDSFT 316
+ T +++T F N ++++ + + ++ + S+HG++ + R + F
Sbjct: 249 DTLCDLYDT-LTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFR 307
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
VL TD+ ARGID+ V LVI D P + + +IHR GR+GR R G A+ F+
Sbjct: 308 QG-NSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFV 364
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 127 bits (319), Expect = 5e-29
Identities = 113/379 (29%), Positives = 170/379 (44%), Gaps = 33/379 (8%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIIS 90
TP+Q +P+ +D++ + TGSGKT AF+ P+L ++ ++ ++I+
Sbjct: 158 TPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPI---AVIVC 214
Query: 91 PTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPG 150
PTREL QIH + F K Y +RS + G S+ + + + +I+V TPG
Sbjct: 215 PTRELCQQIHAECKRFGK-----AYNLRSVAVYG--GGSMWEQAKALQEGA-EIVVCTPG 266
Query: 151 RVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT----I 206
R++D ++K +V DEAD++ D+ F+ V +I + R+T LFSAT I
Sbjct: 267 RLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKI 326
Query: 207 ESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIV 266
E I +R + I + N+ ++ +V
Sbjct: 327 EKLARDILIDPIRVVQGDIGEANEDVTQIVEILH-----------SGPSKWNWLTRR-LV 374
Query: 267 YFPTCISVTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVL 324
F + SV F + +EL NL Q+ L LHG + R K + F VL
Sbjct: 375 EFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK-DIPVL 433
Query: 325 FTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL---NEGREED 381
TDVAARG+DIP + VI D D D HR GRTGRA G A L + D
Sbjct: 434 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 493
Query: 382 YVPFLEVKNVKLEEESVEL 400
V LE N + +E ++L
Sbjct: 494 LVRNLEGANQHVSKELLDL 512
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 127 bits (318), Expect = 6e-29
Identities = 108/374 (28%), Positives = 178/374 (46%), Gaps = 39/374 (10%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPI 65
+DD+ E+ + + GFE + +Q I P+ G+ DV+ ++ +G+GKT F I
Sbjct: 24 FDDM--ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAA 80
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+R+ S K ++ L+++PTRELA QI V+ L ++ D I+ +G
Sbjct: 81 LQRI----DTSVKAPQA----LMLAPTRELALQIQKVVMA-LAFHMD----IKVHACIG- 126
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
S +D D QI+VGTPGRV D +Q+ +T +LDEAD++L F++
Sbjct: 127 -GTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 183
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ I +LP + L SAT+ + ++ MR + Y+ +
Sbjct: 184 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 243
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL-----NLIQDDLKLFSLH 300
++ Y++ +C+ ISVT F N +++ L D + +++
Sbjct: 244 EE-----------YKY-ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 291
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
L Q R + F S + +L +TD+ ARGID+ V LVI D P + + +IHR GR
Sbjct: 292 SDLPQQERDTIMKEFRSG-SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
Query: 361 TGRANRIGKALVFL 374
GR R G A+ F+
Sbjct: 351 GGRFGRKGVAINFV 364
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 127 bits (318), Expect = 6e-29
Identities = 108/374 (28%), Positives = 178/374 (46%), Gaps = 39/374 (10%)
Query: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTI-PLFSGNKDVVVESVTGSGKTIAFVIPI 65
+DD+ E+ + + GFE + +Q I P+ G+ DV+ ++ +G+GKT F I
Sbjct: 24 FDDM--ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAA 80
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+R+ S K ++ L+++PTRELA QI V+ L ++ D I+ +G
Sbjct: 81 LQRI----DTSVKAPQA----LMLAPTRELALQIQKVVMA-LAFHMD----IKVHACIG- 126
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
S +D D QI+VGTPGRV D +Q+ +T +LDEAD++L F++
Sbjct: 127 -GTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 183
Query: 186 VETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPP 245
+ I +LP + L SAT+ + ++ MR + Y+ +
Sbjct: 184 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 243
Query: 246 KDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL-----NLIQDDLKLFSLH 300
++ Y++ +C+ ISVT F N +++ L D + +++
Sbjct: 244 EE-----------YKY-ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 291
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
L Q R + F S + +L +TD+ ARGID+ V LVI D P + + +IHR GR
Sbjct: 292 SDLPQQERDTIMKEFRSG-SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
Query: 361 TGRANRIGKALVFL 374
GR R G A+ F+
Sbjct: 351 GGRFGRKGVAINFV 364
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 126 bits (316), Expect = 1e-28
Identities = 99/392 (25%), Positives = 176/392 (44%), Gaps = 35/392 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L+++ E
Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI--EP 108
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
N L++ TRELA QI E F KY P ++ + G S++ D
Sbjct: 109 VNG------QVTVLVMCHTRELAFQISKEYERFSKYMPS----VKVSVFFG--GLSIKKD 156
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
N P ++VGTPGR+L ++ + + VLDE DK+L+ L+ ++DV+ I ++
Sbjct: 157 EEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRL 216
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P +++ +FSAT+ + + M+ L Y+ + +K
Sbjct: 217 TPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRK 276
Query: 252 XXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSR 308
+ F + I++ + C+++ L++ + ++H + + R
Sbjct: 277 LFDLLDVLEFNQVIIFVKSVQRCMALAQL-----------LVEQNFPAIAIHRGMAQEER 325
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ F + +L T++ RG+DI V++V D P D+D ++HR R GR G
Sbjct: 326 LSRYQQF-KDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 384
Query: 369 KALVFLNEGRE----EDYVPFLEVKNVKLEEE 396
A+ F+++ + D EV +L EE
Sbjct: 385 LAITFVSDENDAKILNDVQDRFEVNVAELPEE 416
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 125 bits (315), Expect = 1e-28
Identities = 111/373 (29%), Positives = 161/373 (42%), Gaps = 45/373 (12%)
Query: 22 IESMGFETMTP--VQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
I+++G E P +Q IP ++++ + TG GKT+ F+IPI+ER +
Sbjct: 110 IKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIER-------HRQM 162
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASV------RDD 133
KK + IISPTREL QI + + LV S V + D
Sbjct: 163 KKPQ--ACIISPTRELCEQIR----------------VEASKLVAGSRIRVVSIYGKKQD 204
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+ S++ I+V TPGR++D L + V + VLDEADKLLD+ F+ + I +
Sbjct: 205 LPSYSG--VDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFV 262
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
PK +T LFSAT ++ + + + + K K
Sbjct: 263 PKNTQTCLFSATYSPKLTRMINYFL-PEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNI 321
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSR 308
+ K + + F+ E ++ LK SLHG + R
Sbjct: 322 LKGPDINLKGS---WRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADR 378
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ L F N V+ T VAARGIDI DV LVI D P D +IHR GRTGR + G
Sbjct: 379 DEALKGF-RNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSG 437
Query: 369 KALVFLNEGREED 381
K++ F + G D
Sbjct: 438 KSISFYDGGMTAD 450
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 125 bits (315), Expect = 1e-28
Identities = 108/370 (29%), Positives = 168/370 (45%), Gaps = 46/370 (12%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I AI +GF TP+QA P+ +D++ + TGSGKT+A+++P L + A
Sbjct: 149 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL---VHVSAQPR 205
Query: 78 KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS--SASVRDDIN 135
+ LI++PTRELA QI + F +RS + G + +RD
Sbjct: 206 LGQDDGPIVLILAPTRELAVQIQEESRKF-----GLRSGVRSTCIYGGAPKGPQIRD--- 257
Query: 136 SFTDNRPQILVGTPGRVLDFL--QKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+I++ TPGR++D L Q TN+K + +VLDEAD++LD+ F+ + I+ +
Sbjct: 258 --LRRGVEIVIATPGRLIDMLECQHTNLKRVTY--LVLDEADRMLDMGFEPQIRKIVSQI 313
Query: 194 PKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV--IPPKD 247
R+T L+SAT +E+ Q + + SIN ++ +P +
Sbjct: 314 RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQ-----SINQVIEIVPTPE 368
Query: 248 KXXXXXXXXNNYRF-KKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
K K +++ T C VT L D ++HG
Sbjct: 369 KYNRLLTLLKQLMDGSKILIFVETKRGCDQVTR-----------QLRMDGWPALAIHGDK 417
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
R + L F S + ++ TDVAARG+D+ D+ V+ D P + +IHR GRTGR
Sbjct: 418 TQSERDRVLAEFKSGRSP-IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGR 476
Query: 364 ANRIGKALVF 373
A G A F
Sbjct: 477 AGAKGMAFTF 486
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 125 bits (314), Expect = 2e-28
Identities = 95/358 (26%), Positives = 174/358 (48%), Gaps = 34/358 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I + GFE + +Q +I +DV+ ++ +G+GKT F I IL+ L ++
Sbjct: 41 IYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL------DTTLRE 94
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ L +SPTRELA QI VI ++ ++ + +G ++ +DI D
Sbjct: 95 TQV--LCLSPTRELAVQIQKVILAL-----GDMMNVQCHVCIG--GTNLGEDIRKL-DYG 144
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
I+ GTPGRV D +++ ++T + +VLDEAD++L+ F++ + + + LP + L
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
SAT+ ++ M + ++ + ++ ++F
Sbjct: 205 ISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREE-----------WKF 253
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLDSFT 316
+ T +++T F N ++++ + + ++ + S+HG + + R + + F
Sbjct: 254 DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
+ VL TTDV ARGID+ V LVI D P + +++IHR GR+GR R G A+ F+
Sbjct: 313 AG-QSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 125 bits (313), Expect = 2e-28
Identities = 99/378 (26%), Positives = 164/378 (43%), Gaps = 50/378 (13%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE---E 73
++ + F TP+Q PL +D+V + TGSGKT+A+++P + + + E
Sbjct: 102 YVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLE 161
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS--SASVR 131
L+++PTRELA Q+ V +D+ K ++S + G + +R
Sbjct: 162 RGDGPI------CLVLAPTRELAQQVQQVADDYGK-----CSRLKSTCIYGGAPKGPQIR 210
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
D + +I + TPGR++DFL+ C +VLDEAD++LD+ F+ + I+
Sbjct: 211 D-----LERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 265
Query: 192 MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD---- 247
+ R+T ++SAT Q+ + +R LS N+ ++ D
Sbjct: 266 QIRPDRQTLMWSATWPKEVRQLAEDFLR-----DYTQINVGNLELSANHNILQIVDVCME 320
Query: 248 -----KXXXXXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSL 299
K + K I++ T C +T + +D +
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLT-----------RRMRRDGWPAMCI 369
Query: 300 HGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCG 359
HG R L+ F S +L TDVA+RG+D+ DV VI D P ++ ++HR G
Sbjct: 370 HGDKSQPERDWVLNEFRSGKA-PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIG 428
Query: 360 RTGRANRIGKALVFLNEG 377
RT R+ G A F G
Sbjct: 429 RTARSTNKGTAYTFFTPG 446
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 124 bits (312), Expect = 3e-28
Identities = 92/368 (25%), Positives = 165/368 (44%), Gaps = 31/368 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L++L
Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ L++ TRELA QI E F KY P+ ++ V S++ D
Sbjct: 112 GQVSV--------LVMCHTRELAFQISKEYERFSKYMPN------VKVAVFFGGLSIKKD 157
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
N P I+VGTPGR+L + ++ +LDE DK+L+ L+ ++DV+ I +M
Sbjct: 158 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 217
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
P +++ +FSAT+ + + M+ L Y+ + +K
Sbjct: 218 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 277
Query: 252 XXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSR 308
+ F + +++ + CI++ L++ + ++H + + R
Sbjct: 278 LFDLLDVLEFNQVVIFVKSVQRCIALAQL-----------LVEQNFPAIAIHRGMPQEER 326
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+ F + +L T++ RG+DI V++ D P D+D ++HR R GR G
Sbjct: 327 LSRYQQF-KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG 385
Query: 369 KALVFLNE 376
A+ F+++
Sbjct: 386 LAITFVSD 393
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 124 bits (312), Expect = 3e-28
Identities = 108/359 (30%), Positives = 163/359 (45%), Gaps = 31/359 (8%)
Query: 53 TGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPD 112
TG+GKT+AF IPIL++L + ++LI++PTRELA QI + K
Sbjct: 192 TGTGKTLAFAIPILQKLSVDPYG--------IYALILTPTRELAFQIAEQFTALGK---- 239
Query: 113 NLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGT---- 168
PI + V S+ ++ RP ++V TPGR+ D ++ A
Sbjct: 240 ---PITLKCSVIVGGRSLIHQARELSE-RPHVVVATPGRLADLIESDPDTIAKVFKKIQF 295
Query: 169 VVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRX--XXXXXX 226
VLDEAD++L+ + ++ I + + ++R+T L SATI + + + R
Sbjct: 296 FVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKG 355
Query: 227 XXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKE 286
L Y+V P K NY K SV F +
Sbjct: 356 KDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKN------PKSSVMIFAQTCRECQA 409
Query: 287 LNLIQDDL--KLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQ 344
L + + L ++ SLH ++ + R+ L +F S T V+ TDVA+RG+DIP VDLV+
Sbjct: 410 LAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSK-TLQVIICTDVASRGLDIPHVDLVVN 468
Query: 345 LDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGV 403
+ P +IHR GR+ RA R G AL F+ + E +V KL+E V K V
Sbjct: 469 HNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHV 527
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 123 bits (308), Expect = 9e-28
Identities = 102/413 (24%), Positives = 179/413 (42%), Gaps = 41/413 (9%)
Query: 8 DDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILE 67
D + + ++ I G++ T +QA P+ + V + TGSGKT+ +++P +
Sbjct: 140 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 199
Query: 68 RLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSS 127
+ ++ + +L+++PTRELA QI V +F + Y + + G
Sbjct: 200 HINNQQPLQ---RGDGPIALVLAPTRELAQQIQQVATEF----GSSSYVRNTCVFGGAPK 252
Query: 128 ASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVE 187
D+ + I++ TPGR++DFL + C +VLDEAD++LD+ F+ +
Sbjct: 253 GGQMRDLQRGCE----IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIR 308
Query: 188 TILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD 247
I+ + R+T ++SAT Q+ + + LS N+ + D
Sbjct: 309 KIVSQIRPDRQTLMWSATWPKEVKQLAEDFL-----GNYIQINIGSLELSANHNIRQVVD 363
Query: 248 -----------KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKL 296
K + K I++ T V FI ++
Sbjct: 364 VCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSF--------GVRC 415
Query: 297 FSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIH 356
++HG R L F S ++ +L TDVAARG+D+ + VI D P +++ +IH
Sbjct: 416 GAIHGDKSQSERDFVLREFRSGKSN-ILVATDVAARGLDVDGIKYVINFDYPQNSEDYIH 474
Query: 357 RCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELK-GVENLTK 408
R GRTGR+N G + F + + ++V L E + E+ +ENL +
Sbjct: 475 RIGRTGRSNTKGTSFAFFTKNNAKQAKALVDV----LREANQEINPALENLAR 523
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 122 bits (307), Expect = 1e-27
Identities = 113/376 (30%), Positives = 166/376 (44%), Gaps = 32/376 (8%)
Query: 9 DLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILER 68
D + +I + I GF+ TP+Q IP+ ++++ + TGSGKT+AF IPIL +
Sbjct: 59 DQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 118
Query: 69 LIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA 128
L K+ AN F +LIISPTRELASQIH + +K + I + +A
Sbjct: 119 L-KQPANKG------FRALIISPTRELASQIH---RELIKISEGTGFRIH----MIHKAA 164
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQK--TNVKTASCGTVVLDEADKLLD---LNFQ 183
+ + ILV TP R++ L++ + AS +V+DE+DKL + F+
Sbjct: 165 VAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFR 224
Query: 184 KDVETI-LKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV 242
+ +I L + R +FSAT Q K + + +
Sbjct: 225 DQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLF 284
Query: 243 IPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL--NLIQDDLKLFSLH 300
+ + F V F I KEL LI + + + +H
Sbjct: 285 VGSETGKLLAMRELVKKGFNP---------PVLVFVQSIERAKELFHELIYEGINVDVIH 335
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
+ Q R T+ SF + VL T + ARGID V+LVI D PT + +IHR GR
Sbjct: 336 AERTQQQRDNTVHSFRAGKI-WVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGR 394
Query: 361 TGRANRIGKALVFLNE 376
TGRA GKA+ F E
Sbjct: 395 TGRAGNKGKAITFFTE 410
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 122 bits (305), Expect = 2e-27
Identities = 96/378 (25%), Positives = 169/378 (44%), Gaps = 48/378 (12%)
Query: 2 SKSLSWDDLKCEIQPW-IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIA 60
S+S W+++ I+ W ++TAI S D++V++ +G+GKT+
Sbjct: 27 SQSACWEEVSLFIRAWALKTAIFS---------------------DMLVQAKSGTGKTLV 65
Query: 61 FVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQ 120
F + +E L + SH +I++PTRE++ QI + + K P R+
Sbjct: 66 FSVLAVENLDS--------RSSHIQKVIVTPTREISVQIKETVR---KVAPTGA---RTS 111
Query: 121 LLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDL 180
+ VG S+ + ++ RPQI++GTPGR+ ++ + + VLDEADKL+D
Sbjct: 112 VYVGGSAHKL--NLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDE 169
Query: 181 NFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINY 240
F+ D+ I+ LP+ R+ +FSAT + T +R + Y
Sbjct: 170 VFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIK-QY 228
Query: 241 IVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLH 300
+V + R+ + +V+ C ++ HLK L D+ S
Sbjct: 229 VVAKCSPMLEKLTHVLKSIRYVQALVF---CDQISKCEPIATHLKSSGL---DVTFVS-- 280
Query: 301 GKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
+ + R +D + +L ++D+ ARGID +V+LV+ +D + + + HR GR
Sbjct: 281 SAMSQKDRQLAVDQLRAKRV-KILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGR 339
Query: 361 TGRANRIGKALVFLNEGR 378
R G A+ L + R
Sbjct: 340 AARFGAHGAAVTLLEDER 357
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 121 bits (304), Expect = 3e-27
Identities = 106/416 (25%), Positives = 184/416 (43%), Gaps = 81/416 (19%)
Query: 21 AIESMGFETMTPVQASTIPL-FSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
AI+++GF+ T +Q+ IPL +D++ ++ TGSGKT+A++IP++E +++ +
Sbjct: 31 AIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNG 90
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+++ +I+ PTRELA Q+++V+E + Y + IR+ + S SV +++
Sbjct: 91 EENGTLGIILVPTRELAQQVYNVLEKLVLYCSKD---IRTLNISSDMSDSV---LSTLLM 144
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGT---VVLDEADKLLDLNFQKDVETILKMLP-- 194
++P+I+VGTPG++LD LQ T + + S +V+DE D +L +Q D+ I + LP
Sbjct: 145 DQPEIIVGTPGKLLDLLQ-TKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLK 203
Query: 195 KQRRTGLFSATIESAGAQIFKTGMR--XXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
K +T L SAT+ + + R L Y+ + DK
Sbjct: 204 KNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDK---- 259
Query: 253 XXXXNNYRFKKCIVYFPTCISVTYFYAFINHLK-----ELNLIQDDLKLFSLHGKLQTQS 307
F C V F + F+N++ +L + Q +K L+ +L S
Sbjct: 260 --------FLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 308 RMKTLDSFTSNLTDAVLFTTDV-------------------------------------- 329
R +D F N+ ++ T D
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKK 371
Query: 330 -----------AARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
+RG+D +V V+ D PT A ++HR GRT R + G A+ F+
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFV 427
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 120 bits (301), Expect = 6e-27
Identities = 104/408 (25%), Positives = 181/408 (43%), Gaps = 75/408 (18%)
Query: 9 DLKCEIQPWIRTAIES--------MGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIA 60
D+ IQ W +T + S + +E P+QA +P+ +D + + TGSGKT+
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 61 FVIPILERLIKE---EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPI 117
FV+P+L + + EA L+++PTREL QI+ I F K P+
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPI------GLVMAPTRELVQQIYSDIRKFSKALGIICVPV 503
Query: 118 RSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEA 174
G+ A ++ T+ I+V TPGR++D L ++ K + V V+DEA
Sbjct: 504 YG----GSGVAQQISELKRGTE----IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEA 555
Query: 175 DKLLDLNFQKDVETILKMLPKQRRTGL----FSATIESAGAQIFKTGMRXXXXXXXXXXX 230
D++ D+ F+ + I++ + R+T L F +E+ ++ +
Sbjct: 556 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVE----------- 604
Query: 231 XXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLI 290
+ + + KD + RF + + F+
Sbjct: 605 -----IQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFV--------- 650
Query: 291 QDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTD 350
+S+ K++ F S++ + +L T VAARG+D+ +++LV+ D P
Sbjct: 651 ---------------RSQEKSISDFKSDVCN-LLIATSVAARGLDVKELELVVNFDAPNH 694
Query: 351 ADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESV 398
+ ++HR GRTGRA R G A+ F++E + Y P L VK ++L E+ V
Sbjct: 695 YEDYVHRVGRTGRAGRKGCAVTFISED-DAKYAPDL-VKALELSEQPV 740
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 119 bits (299), Expect = 1e-26
Identities = 102/380 (26%), Positives = 169/380 (43%), Gaps = 24/380 (6%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AI +E TP+QA IP +DV+ + TGSGKT A++ P + ++ + A
Sbjct: 279 AIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEG 338
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
++I+ PTRELA Q+ + F K Y N+ PI + S + N +
Sbjct: 339 PV---AVIVVPTRELAIQVFQEAKKFCKVY--NINPICAY-----GGGSKWEQSNELQNE 388
Query: 141 RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTG 200
+++V TPGR++D ++ +V DEAD++ D+ F+ V++I + R+
Sbjct: 389 GAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCL 448
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR 260
+FSAT + ++ + + + V+ +D +
Sbjct: 449 MFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQD--------VKLHW 500
Query: 261 FKKCIVYFPTCISVTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQSRMKTLDSFTSN 318
+ +V F + V F +++ L D + LHG + R + L F
Sbjct: 501 LIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKK 560
Query: 319 LTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGR 378
+L TDVAARG+DI ++ VI D D D +HR GRTGRA G A + E +
Sbjct: 561 --SQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTE-K 617
Query: 379 EEDYVPFLEVKNVKLEEESV 398
+ + V L VKN++ + V
Sbjct: 618 DIEMVGHL-VKNLESVSQEV 636
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 119 bits (298), Expect = 1e-26
Identities = 96/371 (25%), Positives = 166/371 (43%), Gaps = 38/371 (10%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
++ +++ GF+ T +Q P+ +D+V + TGSGKT+++ +P ++ A
Sbjct: 123 YVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP---GIVHINAQP 179
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG--TSSASVRDDI 134
L+++PTRELA QI F + IR+ + G S +RD
Sbjct: 180 LLAPGDGPIVLVLAPTRELAVQIQTECSKF-----GHSSRIRNTCVYGGVPKSQQIRD-- 232
Query: 135 NSFTDNRPQILVGTPGRVLDFLQ--KTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
+I++ TPGR++D L+ KTN+K + +VLDEAD++LD+ F+ + I+
Sbjct: 233 ---LSRGSEIVIATPGRLIDMLEIGKTNLKRVTY--LVLDEADRMLDMGFEPQIRKIVDQ 287
Query: 193 LPKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDK 248
+ R+T ++SAT ++ A ++ + +D+
Sbjct: 288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347
Query: 249 XXXXXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQT 305
+ K +++ T C +T + L +D ++HG
Sbjct: 348 LNKYLETASQDNEYKTLIFASTKRMCDDITKY-----------LREDGWPALAIHGDKDQ 396
Query: 306 QSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRAN 365
+ R L F N ++ TDVAARGID+ ++ VI D P + + ++HR GRTGRA
Sbjct: 397 RERDWVLQEF-RNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG 455
Query: 366 RIGKALVFLNE 376
G A+ F E
Sbjct: 456 ATGTAISFFTE 466
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 119 bits (298), Expect = 1e-26
Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 27/350 (7%)
Query: 20 TAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
+++ GF T +Q P+ +D+V + TGSGKT++F++P L + +
Sbjct: 100 SSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPAL---VHAKDQQPLR 156
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+ L+++PTREL QI V+++F ++ +RS + G AS + I + +
Sbjct: 157 RGDGPIVLVLAPTRELVMQIKKVVDEFC-----GMFNLRSTAVYG--GASSQPQIRALHE 209
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
++++ TPGR++D + + + +VLDEAD++LD+ F+ + I+ R+T
Sbjct: 210 GA-EVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQT 268
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI-VIPPKDKXXXXXXXXNN 258
++SAT + ++ M + V ++K +N
Sbjct: 269 LMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDN 328
Query: 259 YRFKKCIVYF---PTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
++ K IV+ TC + Y L + +LHG R K LD F
Sbjct: 329 FKGDKVIVFCNMKRTCDDLEYV-----------LNRSGYGAAALHGDKSQNIRDKVLDDF 377
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRAN 365
S +L T+VA RG+D+ DV LVI D P + ++HR GRT R N
Sbjct: 378 RSG-RRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGN 426
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 119 bits (297), Expect = 2e-26
Identities = 88/354 (24%), Positives = 173/354 (48%), Gaps = 34/354 (9%)
Query: 26 GFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFH 85
GFE + +Q + +DV+ ++ +G+GKT + + + + + +S + +
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVV---DTSSREVQ----- 105
Query: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
+LI+SPTRELA+Q I+ + I++ +G +S V +DI ++ ++
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHAN-----IQAHACIGGNS--VGEDIRKL-EHGVHVV 157
Query: 146 VGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT 205
GTPGRV D +++ +++T + ++LDE+D++L F+ + + + LP + L SAT
Sbjct: 158 SGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSAT 217
Query: 206 IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI 265
+ ++ M + ++ + ++ ++F
Sbjct: 218 LPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEE-----------WKFDTLC 266
Query: 266 VYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLDSFTSNLT 320
+ T +++T F N ++++ + + ++ + S+HG + + R ++ F S
Sbjct: 267 DLYDT-LTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSG-D 324
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
VL TTDV ARGID+ V LVI D P + +++IHR GR+GR R G A+ F+
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 378
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 118 bits (296), Expect = 2e-26
Identities = 105/395 (26%), Positives = 170/395 (42%), Gaps = 53/395 (13%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P + A+ +G+ T +Q IPL KD++ + TGSGKT A+ IP+L+ L+ +
Sbjct: 14 LDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRK 73
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
A +++ L++ PT+ELA Q +I+ Y R + S+A
Sbjct: 74 ATGPVVEQA-VRGLVLVPTKELARQAQSMIQQLATYC------ARDVRVANVSAAEDSVS 126
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTA-SCGTVVLDEADKLLDLNFQKDVETILKM 192
+ +P ++VGTP R+L LQ+ ++K S +V+DEAD L F+++++++L
Sbjct: 127 QRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCH 186
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
LP+ + L SAT + Q K L + +P D+
Sbjct: 187 LPRIYQAFLMSATF-NEDVQALK-----------ELILHNPVTLKLQESQLPGPDQLQQF 234
Query: 253 XXXXNNYRFKKCIVYFPTCISVT--YFYAFINHLKELNLIQDDLKLFS-----LHGKLQT 305
K ++Y +S+ F+N L+ ++ L+ FS L+G+L
Sbjct: 235 QVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPL 294
Query: 306 QSRMKTLDSFTSNLTDAVLFTT-------------------DVA-------ARGIDIPDV 339
+SR + F D V+ T D A ARGID V
Sbjct: 295 RSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHV 354
Query: 340 DLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
V+ D P + +IHR GRT RAN G L F+
Sbjct: 355 SAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFV 389
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 118 bits (296), Expect = 2e-26
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 34/362 (9%)
Query: 27 FETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHS 86
F T T +QA+ IP+ D++++S +G+GKT+ +VI +++ S + H+
Sbjct: 45 FVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQ--------SFNPNINQPHA 96
Query: 87 LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILV 146
+I+ PTRELA Q+ D K + D S + GT A R + N ++++
Sbjct: 97 MIVVPTRELAIQVQDTFFHLCKSFRDFKC---SAFIGGTDVAKDRKRM-----NESRVII 148
Query: 147 GTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDL-NFQKDVETILKMLPKQRRTGLFSAT 205
GTPGR+L + + +VLDEAD+L + Q V +++ +PK R+ SAT
Sbjct: 149 GTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSAT 208
Query: 206 ----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXL----SINYIVIPPKDKXXXXXXXXN 257
++ A++ M + N V + K N
Sbjct: 209 YDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFN 268
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+++ I++ + + ++ N+L + D L S G ++ R+ + +
Sbjct: 269 QLPYEQAIIFASSQMRAD---SYKNYLTASGI---DCHLIS--GAMEQSERLHVFEGY-R 319
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
N T +L TD+ ARG+D P +LVI +DPP D ++HR GR GR G A+ F+
Sbjct: 320 NFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASK 379
Query: 378 RE 379
+E
Sbjct: 380 KE 381
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 118 bits (296), Expect = 2e-26
Identities = 97/365 (26%), Positives = 164/365 (44%), Gaps = 28/365 (7%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
A+ + TP+QA +P +D++ + TGSGKT AF+ P+L ++ ++ + K
Sbjct: 283 AVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQK----QLK 338
Query: 81 KSHFH-SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
LI++PTREL+ QI++ + F K Y N+ V + + + +
Sbjct: 339 PGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNV--------VCCYGGGSKWEQSKALE 390
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
+I+V TPGR++D ++ +VLDEAD++ + F+ V +I + R+
Sbjct: 391 QGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC 450
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIP-PKDKXXXXXXXXNN 258
+FSAT + ++ + + ++ + V P P K
Sbjct: 451 LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQK---------- 500
Query: 259 YRFKKC-IVYFPTCISVTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQSRMKTLDSF 315
+ + C +V F + SV F + + NL+ + LHG + R K + F
Sbjct: 501 WNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 560
Query: 316 TSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLN 375
D +L TDVAARG+DIP + V+ D D + HR GRTGRA G A +
Sbjct: 561 KRKECD-ILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVT 619
Query: 376 EGREE 380
+ +E
Sbjct: 620 DKDKE 624
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 118 bits (295), Expect = 3e-26
Identities = 107/397 (26%), Positives = 176/397 (43%), Gaps = 48/397 (12%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AI + GFE + +Q S IP +VVV+S +G+GKTIA+ +L E
Sbjct: 65 AIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGNTKIGERTQV--- 121
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDI-NSFTD 139
++++PTREL++Q+ +VI L G V + N TD
Sbjct: 122 ------MVVTPTRELSTQVTEVISG----------------LAGPLGIKVFSALKNKITD 159
Query: 140 N-RPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQ-KDVETILKMLPKQR 197
+ +++VG+PG +L ++ + +VLDEAD LLD + ILK++ +
Sbjct: 160 SIGEEVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLISGAQ 219
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
FSAT Q + + + YI ++K
Sbjct: 220 MI-FFSATFSEQVKQTIEF-YAPDAVKMYEERNGKPDEIKLFYIEAEGENKRRALKSLYE 277
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS-LHGKLQTQSRMKTLDSFT 316
+ I++ T A +N+L++ ++DDL S LHG L+ + R K + F
Sbjct: 278 YLSISQMIIFVST-------KATVNYLRK--KLEDDLHSVSCLHGDLEIEEREKAVGDFR 328
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP-----TDADIFIHRCGRTGRANRIGKAL 371
S+ +L TTDV +RG+DIP V+L++ D P +IHR GR+GR R G +
Sbjct: 329 SS-KSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVV 387
Query: 372 VFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTK 408
F+ + E Y+ F K +K + ++ +E + +
Sbjct: 388 DFVRDEELEAYLSF--QKELKFASKKFTIRALEEVAE 422
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 118 bits (295), Expect = 3e-26
Identities = 112/400 (28%), Positives = 178/400 (44%), Gaps = 52/400 (13%)
Query: 21 AIESMGFETMTPVQASTIPL-FSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF 79
AIE MGF T +Q++ +P +DV+ + TGSGKT+AF IP++ RL++ +S +
Sbjct: 169 AIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQET 228
Query: 80 KKSHF---HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS----SASVRD 132
+ + +LI++PTREL QI I I + L+ TS A V+
Sbjct: 229 ESTEVRGPRALIVAPTRELVIQIMKHINAL----------ISTTQLIATSIVGGLAQVKQ 278
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNV-------KTASCGTVVLDEADKLLDLNFQKD 185
+ + RP I+V TPGR+ +Q+ K C +V+DE D++++ + +
Sbjct: 279 E-RIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKC--LVVDETDRMVEEGYFAE 335
Query: 186 VETILKMLPKQR-----RTGLFSATIESAGAQIF----KTGMRXXXXXXXXXXXXXXXXL 236
+ IL + ++ +T +FSAT+ A AQ K + L
Sbjct: 336 LTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGL 395
Query: 237 SINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYF--------YAFINHLKELN 288
N + + R C S+ Y F+N +
Sbjct: 396 RENKHKVIDLTRQMGTAGCLVEARI-NCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAAR 454
Query: 289 LIQDDLKLFS-----LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVI 343
+ LK + LH K+ + R+K L+ F S +AVL TDVAARG+DI +D VI
Sbjct: 455 RLYSVLKSVNIDPMILHAKMIQKQRLKNLEKF-SESKNAVLLATDVAARGLDIQGIDHVI 513
Query: 344 QLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYV 383
P +I+IHR GRT RA+ G +V ++ + Y+
Sbjct: 514 HYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYM 553
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 118 bits (295), Expect = 3e-26
Identities = 96/394 (24%), Positives = 173/394 (43%), Gaps = 30/394 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I MGF +P+Q+ P+ D++ + TG+GKT+AF++P + + E ++ + +
Sbjct: 298 ITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGM--IHTEYQSTPRGTR 355
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+ L+++PTRELA QI ++ Y R V R+ S +
Sbjct: 356 GGANVLVLAPTRELALQIEMEVKK---------YSFRGMKAVCVYGGGNRNMQISDLERG 406
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
+I++ TPGR+ D + + ++ +VLDEAD++LD+ F+ + ++ + R+T +
Sbjct: 407 AEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIM 466
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
SAT ++ ++ M+ S+ I+ +D +F
Sbjct: 467 TSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATH-SVKQIIKLMEDDMD---------KF 516
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS-----LHGKLQTQSRMKTLDSFT 316
+ S F + + +L L +HG R + +
Sbjct: 517 NTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIK 576
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
S + +L TDVA+RG+DI D+ VI D P + + ++HR GRTGRA R G ++ F
Sbjct: 577 SGVV-RILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFT- 634
Query: 377 GREEDYVPFLEVKNVKLEEESVELKGVENLTKIF 410
ED+ E+ + E E + N+ + F
Sbjct: 635 --REDWAMAKELIEILQEAEQEVPDELHNMARRF 666
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 117 bits (294), Expect = 4e-26
Identities = 104/405 (25%), Positives = 178/405 (43%), Gaps = 56/405 (13%)
Query: 2 SKSLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAF 61
S ++S++ + Q I A G+ TP+Q + IP+ KD+ + TG+GKT AF
Sbjct: 145 SVNVSFEQMNLSRQ--ILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAF 202
Query: 62 VIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQL 121
V+PILER+I + S L++ PTRELA Q+ V + + L
Sbjct: 203 VLPILERMIYRPKGA-----SCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGL 257
Query: 122 LVGTSSASVRDDINSFTDNRPQILVGTPGRVLD---------------FLQKTNV----- 161
+ A++R + P ++V TPGR++D F + N+
Sbjct: 258 DLKAQEAALR--------SGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKN 309
Query: 162 -----KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKT 216
K + +VLDEAD++L+ F+ + ++++ + R+T LFSAT+ ++
Sbjct: 310 SRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASM 369
Query: 217 GMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTY 276
++ L +I I + + + T T
Sbjct: 370 SLQKPVKIFINENTDTALKLRQEFIRIRAGRETDR----------EAMVAALVTRTFQTN 419
Query: 277 FYAFINHLKELNLIQDDLKLFSLH-GKLQTQ----SRMKTLDSFTSNLTDAVLFTTDVAA 331
F+ K+ +Q L L + G++Q+ R+++L F D VL +TD+A+
Sbjct: 420 TIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEID-VLVSTDLAS 478
Query: 332 RGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
RG+DI V VI ++ P +IHR GRT RA + G+++ + E
Sbjct: 479 RGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGE 523
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 117 bits (294), Expect = 4e-26
Identities = 95/367 (25%), Positives = 161/367 (42%), Gaps = 38/367 (10%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
++ ++ GF TP+Q+ P+ +D++ + TGSGKT+++++P + + +
Sbjct: 109 YVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHV------N 162
Query: 77 AKFKKSHFHS---LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG--TSSASVR 131
A+ +H L+++PTRELA QI F + I++ + G VR
Sbjct: 163 AQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF-----GSSSKIKTTCIYGGVPKGPQVR 217
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
D +I++ TPGR++D ++ N +VLDEAD++LD+ F + I+
Sbjct: 218 D-----LQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS 272
Query: 192 MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
+ R+T +SAT Q+ K + +I IV
Sbjct: 273 HIRPDRQTLYWSATWPKEVEQLSKKFL-YNPYKVIIGSSDLKANRAIRQIV--------- 322
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKL-----FSLHGKLQTQ 306
+ ++ K + + + F++ K + I L++ S+HG
Sbjct: 323 -DVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQA 381
Query: 307 SRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANR 366
R L F S ++ TDVAARG+D+ DV VI D P + ++HR GRTGRA
Sbjct: 382 ERDWVLSEFRSG-KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 440
Query: 367 IGKALVF 373
G A F
Sbjct: 441 KGTAYTF 447
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 116 bits (291), Expect = 8e-26
Identities = 98/373 (26%), Positives = 163/373 (43%), Gaps = 34/373 (9%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERL--IK 71
+ P + + +P+Q +IP + ++V+ + TGSGKT+AF +P+++ + +K
Sbjct: 133 MSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELK 192
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ A+ + S ++++ PTRELA+Q + +FLKY +S S
Sbjct: 193 QRADYSSSNSSKLLAVVLEPTRELAAQTY---TEFLKY-------------CANTSISAA 236
Query: 132 DDINSFTD-NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL------DLNFQK 184
+ TD ILV TP R++ L K + T+S +V+DE+D+L D F+
Sbjct: 237 NFSGEETDIQHADILVSTPNRIVFHLDK--IDTSSLRWLVVDESDRLFEVVEGQDKCFRN 294
Query: 185 DVETILKML-PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
+ I K K R FSAT + K + +
Sbjct: 295 QLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYC 354
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKL 303
+D FK P + V + +K L+ I +LK+ S++
Sbjct: 355 GTEDGKKIAIRNLLRTSFKP-----PALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGK 409
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
+ R +T++ F VL T++ RG+D+ DV LVI D PT +IHR GRTGR
Sbjct: 410 SDKERDETMERFRRG-EIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGR 468
Query: 364 ANRIGKALVFLNE 376
A + G A+ + +
Sbjct: 469 AGKSGHAVTYFTD 481
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 116 bits (290), Expect = 1e-25
Identities = 103/404 (25%), Positives = 179/404 (43%), Gaps = 55/404 (13%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
+ I F T +QA P+ D+V + TGSGKT+++++P + + N
Sbjct: 105 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-----NHQ 159
Query: 78 KFKKSHFHS--LIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS--SASVRDD 133
F + L+++PTRELA Q+ V ++ + ++S + G + +RD
Sbjct: 160 PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR-----ACRLKSTCIYGGAPKGPQIRD- 213
Query: 134 INSFTDNRPQILVGTPGRVLDFLQ--KTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
+ +I + TPGR++DFL+ KTN++ + +VLDEAD++LD+ F+ + I+
Sbjct: 214 ----LERGVEICIATPGRLIDFLECGKTNLRRTT--YLVLDEADRMLDMGFEPQIRKIVD 267
Query: 192 MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIV--------- 242
+ R+T ++SAT Q+ + ++ LS N+ +
Sbjct: 268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-----DYIHINIGALELSANHNILQIVDVCHD 322
Query: 243 IPPKDKXXXXXXXXNNYRFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSL 299
+ +K + + K IV+ T C +T + +D +
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELT-----------RKMRRDGWPAMGI 371
Query: 300 HGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCG 359
HG Q R L+ F +L TDVA+RG+D+ DV VI D P ++ +IHR G
Sbjct: 372 HGDKSQQERDWVLNEFKHGKA-PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIG 430
Query: 360 RTGRANRIGKALVFL---NEGREEDYVPFLEVKNVKLEEESVEL 400
RT R+ + G A F N + D + L N + + ++L
Sbjct: 431 RTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 115 bits (289), Expect = 1e-25
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 14/197 (7%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I+ GF TP+Q TIPL ++D+V + TGSGKT AF++P++E+L +++S K
Sbjct: 152 IKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKL---KSHSGKIGA 208
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
++I+SP+RELA Q +V +DF + +RS LL G S + + N
Sbjct: 209 ---RAVILSPSRELAMQTFNVFKDFARGTE-----LRSVLLTGGDS--LEEQFGMMMTN- 257
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
P +++ TPGR L + N+ S VV DEAD+L ++ FQ+ + +L LP R+T L
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLL 317
Query: 202 FSATIESAGAQIFKTGM 218
FSAT+ ++ K G+
Sbjct: 318 FSATLPNSLVDFVKAGL 334
Score = 60.1 bits (144), Expect = 9e-09
Identities = 47/128 (36%), Positives = 66/128 (50%), Gaps = 12/128 (9%)
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS-LHGKLQTQSRMKTLDSFTSNLT 320
K I++ PT V Y L++D L S ++G L +R + L +F + LT
Sbjct: 433 KATILFVPTRHHVEYIS---------QLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLT 483
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
++L TDVAARG+DIP + VI P + IF+HR GRT RA G A + E E
Sbjct: 484 -SILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAE-NEL 541
Query: 381 DYVPFLEV 388
Y+ LE+
Sbjct: 542 PYLLDLEL 549
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 115 bits (289), Expect = 1e-25
Identities = 105/379 (27%), Positives = 169/379 (43%), Gaps = 75/379 (19%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
AI+ M F MT +Q TI +D++ + TGS +E +K KF
Sbjct: 383 AIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS----------VELTVK-----LKFM 427
Query: 81 KSHFHSL-IISPTRELASQIHDVIEDFLKYYPDNLYPIRSQ-LLVGTSSASVRDDINSFT 138
++ + I+SPTRELA QI + N + + + L++G + S +
Sbjct: 428 PTNRPGVFILSPTRELAMQI---------FGGANTHHMHTYGLIMGGDNTSAEAQKLA-- 476
Query: 139 DNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
N I+V TPG +LD++Q T + +V+DEAD++LD+ F+++++ I+K+LP R
Sbjct: 477 -NGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCR 535
Query: 198 RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXN 257
T L SAT + + ++
Sbjct: 536 HTMLLSATQTRKVEDLARISLKKGAIKN-------------------------------- 563
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
R +K +V+F + +SV Y Y +N++ DL + ++HGK + T F
Sbjct: 564 --RKRKIMVFFSSSMSVKYHYELLNYM--------DLPILAIHGKQKQNKGTTTFFQFCK 613
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRA-NRIGKALVFLNE 376
+L DVAARG+DIP+VD ++Q DP D +IHR RT R N G L+ L
Sbjct: 614 -ADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEYIHRVSRTARGLNGRGHVLLILCP 672
Query: 377 GREEDYVPFLEVKNVKLEE 395
E ++ +L+ L E
Sbjct: 673 -EEMGFLHYLKQSKFPLSE 690
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 115 bits (288), Expect = 2e-25
Identities = 98/367 (26%), Positives = 157/367 (42%), Gaps = 36/367 (9%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
++ ++ +GFE TP+Q P+ +D+V S TGSGKT+++ +P + + + S
Sbjct: 132 YVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLS 191
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG--TSSASVRDDI 134
L+++PTRELA QI F K IR+ + G +RD I
Sbjct: 192 PGDGPI---VLVLAPTRELAVQIQQECTKFGKSSR-----IRNTCVYGGVPRGPQIRDLI 243
Query: 135 NSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP 194
+I + TPGR+LD L +VLDEAD++LD+ F+ + I+ +
Sbjct: 244 RGV-----EICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298
Query: 195 KQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI--VIPPKDKXXXX 252
R+T +FSAT ++ + + +I I V+ DK
Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASH-NIKQIVEVVDNADKRARL 357
Query: 253 XXXXNNY---RFKKCIVYFPT---CISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQ 306
R K +++ T +T F L QD ++HG
Sbjct: 358 GKDIEEVLKDRDNKVLIFTGTKRVADDITRF-----------LRQDGWPALAIHGDKAQD 406
Query: 307 SRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANR 366
R L+ F + ++ TDVA+RGID+ + V D P + + ++HR GRTGRA
Sbjct: 407 ERDWVLNEFRTG-KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGA 465
Query: 367 IGKALVF 373
G A +
Sbjct: 466 KGTAYTY 472
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 114 bits (286), Expect = 3e-25
Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 45/377 (11%)
Query: 13 EIQPWIRTAIESMGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVIPILERLI 70
E++P + I SM F+ + +Q +PL N ++++ +S +G+GKT AF + +L R+
Sbjct: 120 ELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV- 178
Query: 71 KEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASV 130
A K ++ ++P+RELA QI DV+ + KY ++ +
Sbjct: 179 -----DASVPKPQ--AICLAPSRELARQIMDVVTEMGKYTEVK------------TAFGI 219
Query: 131 RDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
+D + QI++GTPG V+D +++ + VLDEAD +LD D +
Sbjct: 220 KDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 279
Query: 191 K-MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKX 249
K +LP+ + LFSAT ++ K R LS+ I K
Sbjct: 280 KHLLPRNTQIVLFSATFSE---RVEKYAER--FAPNANEIRLKTEELSVEGI------KQ 328
Query: 250 XXXXXXXNNYRFKKCI-VYFPTCISVTYFYAFINHLKE---LNLIQDDLKLFSLHGKLQT 305
+++ + +Y I + + E + D + L G L+
Sbjct: 329 LYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEG 388
Query: 306 QSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP------TDADIFIHRCG 359
R +DSF T VL TT+V ARGID+ V+LV+ D P D ++HR G
Sbjct: 389 AQRDAIMDSFRVG-TSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 447
Query: 360 RTGRANRIGKALVFLNE 376
RTGR R+G ++ F+++
Sbjct: 448 RTGRFGRVGVSINFVHD 464
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 114 bits (286), Expect = 3e-25
Identities = 102/379 (26%), Positives = 173/379 (44%), Gaps = 44/379 (11%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVI 63
S+++L+ ++P + + +MGF + +Q + +PL ++++ +S +G+GKT AFV+
Sbjct: 93 SFEELR--LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 64 PILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPD--NLYPIRSQL 121
+L ++ E AN + L +SPT ELA Q VIE K+YP+ Y +R
Sbjct: 151 AMLSQV--EPANK------YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202
Query: 122 LVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDL 180
L S QI++GTPG VLD+ K + VLDEAD ++
Sbjct: 203 LERGQKIS------------EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250
Query: 181 NFQKDVE-TILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN 239
+D I +MLP+ + LFSAT E + + + + +
Sbjct: 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQY 310
Query: 240 YIVIPPKD-KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
Y++ +D K + +++ T + ++ A L ++ ++
Sbjct: 311 YVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA--------ELSKEGHQVAL 362
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDAD------ 352
L G++ + R ++ F + VL TT+V ARGID+ V +VI D P D D
Sbjct: 363 LSGEMMVEQRAAVIERFREG-KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 421
Query: 353 IFIHRCGRTGRANRIGKAL 371
++HR GRTGR + G A+
Sbjct: 422 TYLHRIGRTGRFGKRGLAV 440
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 114 bits (285), Expect = 4e-25
Identities = 96/364 (26%), Positives = 157/364 (42%), Gaps = 24/364 (6%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+ + GFE +PVQ IPL D++V++ +G+GKT F L+ L+ E ++
Sbjct: 77 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST----- 131
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
LI++PTRE+A QIH VI + + + +G + S + +
Sbjct: 132 ---QILILAPTREIAVQIHSVITAI----GIKMEGLECHVFIGGTPLSQ----DKTRLKK 180
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDL-NFQKDVETILKMLPKQRRTG 200
I VG+PGR+ ++ + S +LDEADKLL+ +FQ+ + I LP ++
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 240
Query: 201 LFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI---PPKDKXXXXXXXXN 257
SAT A MR L Y V+ P K
Sbjct: 241 AVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHL 300
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
F + + F + + ++ HL ++ L + G + R+ +
Sbjct: 301 QELFSR--IPFNQALVFSNLHSRAQHLADI-LSSKGFPAECISGNMNQNQRLDAMAKL-K 356
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEG 377
+ VL +TD+ +RGID V+LV+ LD P D + ++HR GR GR +G + + G
Sbjct: 357 HFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRG 416
Query: 378 REED 381
EE+
Sbjct: 417 EEEN 420
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 114 bits (285), Expect = 4e-25
Identities = 93/383 (24%), Positives = 166/383 (43%), Gaps = 41/383 (10%)
Query: 11 KCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLI 70
+C + + ++ + T +QA IP +DV+ + TGSGKT+AF++P+ ++
Sbjct: 308 QCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL 367
Query: 71 K----EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
EE + ++I++PTRELA Q + F K P+ ++
Sbjct: 368 DQPELEEGDGP-------IAVILAPTRELAMQTYKEANKFAK-------PLGLKVACTYG 413
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEADKLLDLNFQ 183
+ + I +I+V TPGR++D L + K + V VLDEAD++ D F+
Sbjct: 414 GVGISEQIADL-KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFE 472
Query: 184 KDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
+ ++ + ++T LFSAT + + + ++ N ++
Sbjct: 473 PQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVIC 532
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL------KLF 297
+ +F K + F++ ++ + I D L +
Sbjct: 533 ------------AEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVA 580
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
LHG + R ++ F + + VL T VAARG+D+ ++ LV+ D P + ++HR
Sbjct: 581 PLHGGIDQHDRDSSIADFKTGVI-KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHR 639
Query: 358 CGRTGRANRIGKALVFLNEGREE 380
GRTGRA R G A F+ +E
Sbjct: 640 VGRTGRAGRKGYAYTFVLPEHQE 662
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 114 bits (285), Expect = 4e-25
Identities = 93/383 (24%), Positives = 166/383 (43%), Gaps = 41/383 (10%)
Query: 11 KCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLI 70
+C + + ++ + T +QA IP +DV+ + TGSGKT+AF++P+ ++
Sbjct: 308 QCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL 367
Query: 71 K----EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
EE + ++I++PTRELA Q + F K P+ ++
Sbjct: 368 DQPELEEGDGP-------IAVILAPTRELAMQTYKEANKFAK-------PLGLKVACTYG 413
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTV---VLDEADKLLDLNFQ 183
+ + I +I+V TPGR++D L + K + V VLDEAD++ D F+
Sbjct: 414 GVGISEQIADL-KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFE 472
Query: 184 KDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
+ ++ + ++T LFSAT + + + ++ N ++
Sbjct: 473 PQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVIC 532
Query: 244 PPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDL------KLF 297
+ +F K + F++ ++ + I D L +
Sbjct: 533 ------------AEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVA 580
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
LHG + R ++ F + + VL T VAARG+D+ ++ LV+ D P + ++HR
Sbjct: 581 PLHGGIDQHDRDSSIADFKTGVI-KVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHR 639
Query: 358 CGRTGRANRIGKALVFLNEGREE 380
GRTGRA R G A F+ +E
Sbjct: 640 VGRTGRAGRKGYAYTFVLPEHQE 662
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 114 bits (284), Expect = 5e-25
Identities = 102/369 (27%), Positives = 164/369 (43%), Gaps = 33/369 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
I+P ++ E F+ TP+QA+ + ++ + TG+GKT+AF++PIL R+
Sbjct: 3 IKPALQAQFEQQ-FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRI---- 57
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
K K++ LI++P++ELA Q V ++ L + L+G A+ R
Sbjct: 58 --DPKVKQTQV--LILAPSQELAMQTTAVAREW-----GALVDVSVTSLIG--GANGRRQ 106
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+ ++P I+VGT GRVL L +K TV+ DEAD +L + ++ + L
Sbjct: 107 ADKLKKDKPHIVVGTLGRVLTMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQL 166
Query: 194 PKQRRTGLFSATIESAGAQI-FKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
P + GLFSAT +G + + ++ + + K K
Sbjct: 167 PTDVQLGLFSAT---SGVDLKYVADTFGQEVRPVSVGTDAPAAITHEFQYVDQKAKASLL 223
Query: 253 XXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312
N ++ +V+F T + A + H + + K Q Q R L
Sbjct: 224 IQLARNK--QQALVFFNTISGLVNMQATLRH------AHASVMSIGSNDKRQVQ-RADAL 274
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
F ++L TDVAARG+DI D+ LV+ P +IHR GRTGR + G+
Sbjct: 275 RLFKKGEV-SLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMGKPGRV-- 331
Query: 373 FLNEGREED 381
LN G + D
Sbjct: 332 -LNLGNDHD 339
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 114 bits (284), Expect = 5e-25
Identities = 86/326 (26%), Positives = 157/326 (47%), Gaps = 34/326 (10%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I + GFE + +Q IP +DV+ ++ +G+GKT F I +L+ L + +
Sbjct: 41 IYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRET----- 95
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+LI+SPTRELA QI V+ Y ++ +G ++ +DI D
Sbjct: 96 ---QALILSPTRELAVQIQKVVLALGDYMN-----VQCHACIG--GTNLGEDIRKL-DYG 144
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
++ GTPGRV D +++ N++T + +VLDEAD++L+ F++ + I + LP + L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 202 FSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRF 261
SAT+ ++ M + ++ + ++ ++F
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREE-----------WKF 253
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDDLK-----LFSLHGKLQTQSRMKTLDSFT 316
I + T +++T F N ++++ + D +K + S+HG ++ + R + + F
Sbjct: 254 DTLIDLYDT-LTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLV 342
+ T VL +TDV ARG+D+P V LV
Sbjct: 313 AG-TTRVLISTDVWARGLDVPQVSLV 337
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 113 bits (282), Expect = 9e-25
Identities = 99/379 (26%), Positives = 171/379 (44%), Gaps = 44/379 (11%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVI 63
S+++L+ ++P + + +MGF + +Q + +P+ ++++ +S +G+GKT AFV+
Sbjct: 92 SFEELR--LKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149
Query: 64 PILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPD--NLYPIRSQL 121
+L R+ + + L +SPT ELA Q VIE K+YP+ Y +R
Sbjct: 150 AMLSRVEPSDR--------YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 201
Query: 122 LVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDL 180
L S QI++GTPG VLD+ K + VLDEAD ++
Sbjct: 202 LERGQKIS------------EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 249
Query: 181 NFQKDVE-TILKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN 239
+D I +MLP+ + LFSAT E + + + + +
Sbjct: 250 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQY 309
Query: 240 YIVIPPKD-KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS 298
Y++ +D K + +++ T + ++ A L ++ ++
Sbjct: 310 YVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA--------ELSKEGHQVAL 361
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDAD------ 352
L G++ + R ++ F + VL TT+V ARGID+ V +VI D P D D
Sbjct: 362 LSGEMMVEQRAAVIERFREG-KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 420
Query: 353 IFIHRCGRTGRANRIGKAL 371
++HR GRTGR + G A+
Sbjct: 421 TYLHRIGRTGRFGKRGLAV 439
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 113 bits (282), Expect = 9e-25
Identities = 94/387 (24%), Positives = 176/387 (45%), Gaps = 23/387 (5%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P + +I +G TP+Q+ P+ D++V + TG+GKT+++++P L + +
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
+ +++ L+++PTRELA + + KY L I + G + +DI+
Sbjct: 291 --REQRNGPGMLVLTPTRELALHVE---AECSKYSYKGLKSIC--IYGGRNRNGQIEDIS 343
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
D I++ TPGR+ D +V S +V+DEADK+LD+ F+ + IL +
Sbjct: 344 KGVD----IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP 399
Query: 196 QRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXX 254
R+T + SAT Q+ + ++ + N IV K+K
Sbjct: 400 DRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQE 459
Query: 255 XXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDS 314
N ++ F V+ + + + N+ + SLHG + + + ++
Sbjct: 460 FVENMSPNDKVIMF-----VSQKHIADDLSSDFNI--QGISAESLHGNSEQSDQERAVED 512
Query: 315 FTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFL 374
F S +L TTD+ +RG+D+ DV V D P + D+++HR G GR + G ++ +
Sbjct: 513 FKSG-NIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLI 571
Query: 375 NEGREE---DYVPFLEVKNVKLEEESV 398
+ + + + L+ N + E+ V
Sbjct: 572 TQRDSKMAGELIKILDRANQSVPEDLV 598
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 113 bits (282), Expect = 9e-25
Identities = 93/350 (26%), Positives = 159/350 (44%), Gaps = 29/350 (8%)
Query: 12 CEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK 71
C + + ++ G+E TP+Q IP+ +D++ + TGSGKT AF++P++ R +
Sbjct: 208 CSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALF 267
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
E + +LI++PTRELA QI ++ + P +++ LLVG +
Sbjct: 268 ESKTPS--------ALILTPTRELAIQIERQAKELMSGLPR----MKTVLLVG--GLPLP 313
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
+ + ++++ TPGR+LD +++++V+ VV+DEAD +L + FQ+ V IL+
Sbjct: 314 PQLYRLQQH-VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILE 372
Query: 192 MLPKQRRTGLFSAT----IESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD 247
+P +T L SAT IE +Q+ +R I V P
Sbjct: 373 NIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVR---QIILWVEDPAK 429
Query: 248 KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQS 307
K + FK ++ F C + L E LK S+H +
Sbjct: 430 KKKLFEILNDKKLFKPPVLVFVDC------KLGADLLSEAVQKITGLKSISIHSEKSQIE 483
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
R L + V+ +T V RG+D+ V LV+ D P+ D ++H+
Sbjct: 484 RKNILKGLLEGDYEVVV-STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 113 bits (282), Expect = 9e-25
Identities = 108/405 (26%), Positives = 174/405 (42%), Gaps = 59/405 (14%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFK 80
A+ G E T +Q S IP KDVV + TGSGKT+A+++P+L++L A+S K
Sbjct: 60 ALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLF--SADSVSKK 117
Query: 81 KSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN 140
K + I+ P+REL Q++ + ++ L ++ + + TSS S D N+
Sbjct: 118 KLAPSAFILVPSRELCQQVYTEVSSLIE-----LCRVQLKAVQLTSSMSASDMRNALA-G 171
Query: 141 RPQILVGTPGRV-----LDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
P+ILV TP + L+ T V + S +VLDEAD LL ++ ++ ++ ++P+
Sbjct: 172 LPEILVSTPACIPKCFAAGVLEPTAV-SESLSILVLDEADLLLSYGYEDNLRSVTSIIPR 230
Query: 196 QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSIN----YIVIPPKDKXXX 251
+ + L SAT S ++ K + + N +I +DK
Sbjct: 231 RCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLH 290
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
+K I+ F I + + LK L L + +K L+G+L SR+
Sbjct: 291 ILALLKLEVVQKKILIFINTIDMGF------RLK-LFLEKFGIKSAILNGELPQNSRLHI 343
Query: 312 LDSFTSNLTDAVLFTTDVA----------------------------------ARGIDIP 337
L+ F + L D ++ T D + RGID
Sbjct: 344 LEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFK 403
Query: 338 DVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDY 382
V VI D P +IHR GRTGRA G ++ ++ E +
Sbjct: 404 KVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGF 448
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 112 bits (279), Expect = 2e-24
Identities = 107/411 (26%), Positives = 172/411 (41%), Gaps = 55/411 (13%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-- 71
+ P I ++ + + + +Q + IP DV+ ++ T +GKT AF +PI++++++
Sbjct: 388 LHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMD 447
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
EE + + +LI++PTRELA+QIH+ L+ Y N I +L+ +
Sbjct: 448 EETRNKARQDDGPLALILAPTRELAAQIHEA----LRTYCQNTDII---VLLSYGQSDRA 500
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
+N N IL+GT GR++DF K+++ +V DEAD+LL + +KD
Sbjct: 501 RSLNEIR-NGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQ-DMKKD------ 552
Query: 192 MLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXX 251
G A I+ AG ++ ++ + P
Sbjct: 553 ------PLGHLGAIIKDAG--FMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMI 604
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLF-------------- 297
N K+ + F C + A + + + N+ LK
Sbjct: 605 KIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAA 664
Query: 298 ----------SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQL-- 345
+LHG R K ++ F SN + +L TTD+ +RGID+ D+D VI
Sbjct: 665 KLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVN-LLVTTDLLSRGIDVSDLDRVINFDL 723
Query: 346 ---DPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKL 393
DP AD FIHR GRTGR R L + D L K V+L
Sbjct: 724 PDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVEL 774
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 108 bits (269), Expect = 3e-23
Identities = 109/426 (25%), Positives = 186/426 (43%), Gaps = 69/426 (16%)
Query: 22 IESMGFETMTPVQASTIPLFSGN-----KDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
I+S+ +++ PV T+ + N D++V + TGSGKT+A+ IPI++ L K + N
Sbjct: 200 IQSIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQINR 259
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSA--SVRDDI 134
+ +II PT+ L +Q++ + + + L+V + S++D+
Sbjct: 260 LR-------CIIIVPTKLLINQVYTTLTKLTQ---------GTSLIVSIAKLENSLKDEH 303
Query: 135 NSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETI----- 189
++ P IL+ TPGR++D L ++ + +++DEAD+LL+ +FQ +
Sbjct: 304 KKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLK 363
Query: 190 ---LKMLPKQRRTGLFSATIES-----AGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYI 241
L LP +FSAT+ + G ++K + +IN
Sbjct: 364 TDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNIN-- 421
Query: 242 VIPPKDKXXXXXXXXNNYRFKKCIVYFPTCISVTYFY----AFINHLKELNLIQDDLKLF 297
IP Y + + + P + F + I K L LI +
Sbjct: 422 -IPTAKSVYKPLILL--YSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQS 478
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDA-------------------VLFTTDVAARGIDIPD 338
S+ LQ + +++S SN + A +L TTD+ +RGIDI D
Sbjct: 479 SVLKNLQNLA--VSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDIMSRGIDIND 536
Query: 339 VDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESV 398
+ VI DPP + ++HR GRT RAN +G A L GR E F + N L+ +
Sbjct: 537 ITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLL-VGRGER--TFFDDLNKDLDRDGK 593
Query: 399 ELKGVE 404
++ +E
Sbjct: 594 SVQPLE 599
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 106 bits (264), Expect = 1e-22
Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 40/378 (10%)
Query: 17 WIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS 76
+I + +GF+ TP+Q IP+ ++ + TGSGKT AF+ P+ LIK + +
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPM---LIKLKVLN 207
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIR--SQLLVGTSSASVRDDI 134
+ ++I+SP RELA+Q + K + + IR ++ LV T+
Sbjct: 208 CRPSTDGIRAVILSPARELAAQ---TAREGKKLIKGSNFHIRLMTKPLVKTA-------- 256
Query: 135 NSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML- 193
F+ +L+ TP R+ ++ + + +VLDE+DKL + + K ++ ++K
Sbjct: 257 -DFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACS 315
Query: 194 -PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
P R+ LFSAT+ + ++ ++ M + + ++
Sbjct: 316 NPSIIRS-LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLA 374
Query: 253 XXXXNNYRFKKCIVYFPTCIS--VTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQSR 308
F ++ V F KEL L ++++ +H L R
Sbjct: 375 LRQS-----------FAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGER 423
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+D F + VL TDV ARG+D ++ VI D P A +IHR GR+GRA R G
Sbjct: 424 ENAVDQFRAG-EKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSG 482
Query: 369 KALVFLNEGREEDYVPFL 386
+A+ F E VPFL
Sbjct: 483 EAITFYT----EQDVPFL 496
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 105 bits (262), Expect = 2e-22
Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 46/375 (12%)
Query: 25 MGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKS 82
MGF + +Q +P+ + ++++ +S +G+GKT AFV+ +L R+ E
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFP------ 54
Query: 83 HFHSLIISPTRELASQIHDVIEDFLKYYPDN--LYPIRSQLLVGTSSASVRDDINSFTDN 140
L ++PT ELA Q V+E K+ D +Y IR + I TD
Sbjct: 55 --QCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRG------------NRIPRGTDI 100
Query: 141 RPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDL-NFQKDVETILKMLPKQRR 198
QI++GTPG VLD+ K + VLDEAD ++D F I + LP + +
Sbjct: 101 TKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQ 160
Query: 199 TGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIP-PKDKXXXXXXXXN 257
LFSAT E + + + + Y++ KDK
Sbjct: 161 MLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG 220
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+ + I++ T + + + +IQD ++ L G+L + R + F
Sbjct: 221 SITIGQAIIFCQTRRNAKWL--------TVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 272
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT------DADIFIHRCGRTGRANRIGKAL 371
+ VL TT+V ARGID+ V +V+ D P D + ++HR GRTGR + G A
Sbjct: 273 G-KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 331
Query: 372 VFLNEGREEDYVPFL 386
+ E D +P L
Sbjct: 332 NMI----EVDELPSL 342
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 104 bits (259), Expect = 4e-22
Identities = 102/375 (27%), Positives = 161/375 (42%), Gaps = 46/375 (12%)
Query: 25 MGFETMTPVQASTIPLFSGN--KDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKS 82
MGF + +Q +P+ + ++++ +S +G+GKT AFV+ +L R+ E
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFP------ 54
Query: 83 HFHSLIISPTRELASQIHDVIEDFLKYYPDN--LYPIRSQLLVGTSSASVRDDINSFTDN 140
L ++PT ELA Q V+E K+ D +Y IR + I TD
Sbjct: 55 --QCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRG------------NRIPRGTDI 100
Query: 141 RPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDL-NFQKDVETILKMLPKQRR 198
QI++GTPG VLD+ K + VLDEAD ++D F I + LP + +
Sbjct: 101 TKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQ 160
Query: 199 TGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIP-PKDKXXXXXXXXN 257
LFSAT E + + + + Y++ KDK
Sbjct: 161 MLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG 220
Query: 258 NYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTS 317
+ + I++ T + + + +IQD ++ L G+L + R F
Sbjct: 221 SITIGQAIIFCQTRRNAKWL--------TVEMIQDGHQVSLLSGELTVEQRASITQRFRD 272
Query: 318 NLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT------DADIFIHRCGRTGRANRIGKAL 371
+ VL TT+V ARGID+ V +V+ D P D + ++HR GRTGR + G A
Sbjct: 273 G-KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 331
Query: 372 VFLNEGREEDYVPFL 386
+ E D +P L
Sbjct: 332 NMI----EVDELPSL 342
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 104 bits (259), Expect = 4e-22
Identities = 88/368 (23%), Positives = 159/368 (42%), Gaps = 27/368 (7%)
Query: 34 QASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTR 93
Q + +P+ G +DV+ ++ +G+GKT I + + L++SP+R
Sbjct: 50 QRALVPILKG-RDVIAQAQSGTGKTSMIAISVCQ--------IVNISSRKVQVLVLSPSR 100
Query: 94 ELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVL 153
ELASQ I+ + I++ +G S+ +DI + + GTPGRV
Sbjct: 101 ELASQTEKTIQAIGAH-----TNIQAHACIG--GKSIGEDIKKL-ERGVHAVSGTPGRVY 152
Query: 154 DFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQI 213
D +++ +++T + +VLDE+D++L + + + + LP + L SAT+ ++
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEM 212
Query: 214 FKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD-KXXXXXXXXNNYRFKKCIVYFPTCI 272
+ M + Y+ + ++ K + I++ T
Sbjct: 213 TEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQ 272
Query: 273 SVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAAR 332
V + ++ N I + S+HG + + R ++ F S VL +DV AR
Sbjct: 273 KVDW---LTEKMRSSNFI-----VSSMHGDKRQKERDDIMNQFRS-FKSRVLIASDVWAR 323
Query: 333 GIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVK 392
GID+ V VI D P + +++IHR GR GR R G A+ F+ +D K
Sbjct: 324 GIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTK 383
Query: 393 LEEESVEL 400
+ E +L
Sbjct: 384 IREMPADL 391
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 104 bits (259), Expect = 4e-22
Identities = 93/389 (23%), Positives = 165/389 (41%), Gaps = 41/389 (10%)
Query: 13 EIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE 72
E+ I A+ +G++ T +Q++ IPL KDVVV + TGSGKT + +P++++++
Sbjct: 15 ELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNS 74
Query: 73 EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132
+ N++ + + +++++PT++L Q VIE ++ +R + +S+ +V
Sbjct: 75 KLNAS---EQYVSAVVLAPTKKLCRQSRKVIEQLVESCGK---VVRVADIADSSNDTVTQ 128
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVETILK 191
P I+V TP +L + + + V T+V+DEAD + ++KD + ++K
Sbjct: 129 --RHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIK 186
Query: 192 MLPKQRRTGLFSATIESAGAQIFKTGMRX-XXXXXXXXXXXXXXXLSINYIVIPPKDKXX 250
LP + L SAT+ ++ + LS I+ DK
Sbjct: 187 HLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPA 246
Query: 251 XXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMK 310
+ + F I Y L L Q ++ L+ +L R+
Sbjct: 247 ILYALLKLRLIRGKSIIFVNSIDRCY-------KVRLFLEQFGIRACVLNSELPANIRIH 299
Query: 311 TLDSFTSNLTDAVLFTTD------------------------VAARGIDIPDVDLVIQLD 346
T+ F D ++ + + A+RGID V+ VI D
Sbjct: 300 TISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFD 359
Query: 347 PPTDADIFIHRCGRTGRANRIGKALVFLN 375
P D +IHR GRT R N G L F++
Sbjct: 360 FPRDVTSYIHRAGRTARGNNKGSVLSFVS 388
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 103 bits (257), Expect = 7e-22
Identities = 95/344 (27%), Positives = 156/344 (44%), Gaps = 25/344 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ P ++ AI FE T VQ+ TIPL KD+V ++ TGSGKT A++IPILE L+K++
Sbjct: 21 LDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQK 80
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
+ +L++ PTRELA Q+++V+E + + IR + SS +V+
Sbjct: 81 --QIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKH---IRFINVATNSSDTVQ-- 133
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
+ P I++ TP R + + + +V+DEAD +L + +D++T+ + L
Sbjct: 134 -RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSL 192
Query: 194 PKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXX 253
P+ ++ L SAT+ A + K R L+ + +DK
Sbjct: 193 PRGTQSFLMSATLSKNIASLQKLVCR-NPFILAVKDKEASGKLTQYVVKCSEQDKFLLAY 251
Query: 254 XXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLD 313
K I+ F I+ Y LK L L Q LK L+ +L SR+ L+
Sbjct: 252 ILLKLRLIKGKILIFVNEINRCY------RLK-LFLEQFGLKSLVLNSELPVNSRLHILE 304
Query: 314 SFTSNLTDAVLFTTDVAARG--------IDIPDVDLVIQLDPPT 349
+ L ++ T + G +D + + VI D PT
Sbjct: 305 QYNKGLYQIIIATDESGMMGEIEELENNVDFVEEE-VISTDQPT 347
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 103 bits (256), Expect = 1e-21
Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 25/355 (7%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPIL----ERLIKEEAN- 75
A++ + E T +Q IP K VV+ S TGSGKT+A+++PI+ E + ++EAN
Sbjct: 126 ALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQVLSELMREDEANL 185
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
K K ++++ PTREL+ Q+ + +D+ + RS L+ G S ++D
Sbjct: 186 GKKTKPRRPRTVVLCPTRELSEQV-CLHQDY------HHARFRSILVSGGSRIRPQED-- 236
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+N ++VGTPGR+L +++ N+ +VLDEAD + D F ++ L P
Sbjct: 237 -SLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFL--APL 293
Query: 196 QRRTGLFSATIESAGAQ-IFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXX 254
+ + + + Q + + ++I + +
Sbjct: 294 NQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALL 353
Query: 255 XXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDS 314
K C ++ A ++L E + + + HG++ + R++ L
Sbjct: 354 QVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSE-----NQISTVNYHGEVPAEQRVENLKK 408
Query: 315 FTSNLTDA-VLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
F D L TD+AARG+D+ DVD V+ D P ++ ++HR GRT R G
Sbjct: 409 FKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 102 bits (255), Expect = 1e-21
Identities = 101/372 (27%), Positives = 168/372 (45%), Gaps = 58/372 (15%)
Query: 67 ERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTS 126
+ L + A + K L+++PTRELA Q+ I+ ++ I++ +LVG
Sbjct: 371 QELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTG-----IKTAILVGGM 425
Query: 127 SASVRDDINSFTDNRPQILVGTPGRVLDFLQKT-----NVKTASCGTVVLDEADKLLDLN 181
S + + + RP+I+V TPGR+ + +++ N++ C +V+DEAD++++
Sbjct: 426 STQKQQRM---LNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRC--LVVDEADRMVEKG 480
Query: 182 FQKDVETILKML------PKQRRTGLFSAT---IESAGAQIF------------------ 214
++ +L+ML PK R+T +FSAT + A A+I
Sbjct: 481 HFAELSQLLEMLNDSQYNPK-RQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLM 539
Query: 215 -KTGMRXX-XXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCIVYFPTCI 272
K GMR L+ I +K Y + + F I
Sbjct: 540 QKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLV--FANSI 597
Query: 273 SVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAAR 332
S I L L + D + L +LH + + R++ L+ F + L D VL TDVAAR
Sbjct: 598 SC------IKRLSGLLKVLDIMPL-TLHACMHQKQRLRNLEQF-ARLEDCVLLATDVAAR 649
Query: 333 GIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVK 392
G+DIP V VI P ++I++HR GRT RA G +L+ + ED + F ++
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIG---PEDVINFKKIYKTL 706
Query: 393 LEEESVELKGVE 404
++E + L V+
Sbjct: 707 KKDEDIPLFPVQ 718
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 102 bits (254), Expect = 2e-21
Identities = 95/360 (26%), Positives = 154/360 (42%), Gaps = 30/360 (8%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIIS 90
T +Q IP +D++ + TGSGKTIA++ PIL++L + ++I++
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG-------YRAIIVA 122
Query: 91 PTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPG 150
PTREL QI+ E + +L I + S+ +++ + + + +GTP
Sbjct: 123 PTRELCEQIYRQAEKL--SFGTSLKIIE----LSKSNEKIQEKAPKLRE-KYDMCIGTPM 175
Query: 151 RVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR-RTGLFSATIESA 209
R++ +Q T + V+DEAD+L + F + + IL LFSATI S
Sbjct: 176 RLVQAIQ-TGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSR 234
Query: 210 GAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI-PPKDKXXXXXXXXNNYRFKKCIVYF 268
++ K + + + K +N K +V
Sbjct: 235 VEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVV-- 292
Query: 269 PTCISVTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFT 326
F I K L L+ D++ + +HG+L R + L F VL
Sbjct: 293 -------IFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKG-EIWVLIA 344
Query: 327 TDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFL 386
TD+ ARGID V +VI D P +IHR GRTGRA G+A+ F + + +Y+ +
Sbjct: 345 TDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTK-EDGEYIKLI 403
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 102 bits (254), Expect = 2e-21
Identities = 103/355 (29%), Positives = 154/355 (43%), Gaps = 43/355 (12%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIIS 90
T VQ IP + V V S TGSGKT+++V+P + L E+ + L+I
Sbjct: 80 TDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLL---ESGDKRL-------LVIV 129
Query: 91 PTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRP-QILVGTP 149
PTREL SQ+ V F + L + + V + +RP + + TP
Sbjct: 130 PTRELVSQVGQVFRKFSE----------GLLRIVEITGEVSIESQRLQVSRPFDVAISTP 179
Query: 150 GRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSAT-IES 208
GR+ + L+ ++ VV+DEAD+L+ + + DV IL+ + K FSAT E
Sbjct: 180 GRLRELLELKSI--GGFEYVVVDEADRLMQHDIRSDVTFILERM-KPEVASFFSATPFEW 236
Query: 209 AGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYR--FKKCIV 266
+G G + ++ + K+K + K +
Sbjct: 237 SGGTRILVG-----------NVSVGRDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMG 285
Query: 267 YFPTCISVTYFYAFINHLKEL-NLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLF 325
+ V F N ++ NL + +L LH + Q R +++ AVL
Sbjct: 286 VDRNGLEVKKIIVFCNSIRTCENLHKRFRQLLVLHSRRTMQERKAVIEALEGER--AVLI 343
Query: 326 TTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL-VFLNEGRE 379
TD+ RGIDI DVDLV+ D P D ++HRCGRTGR R G AL + E RE
Sbjct: 344 ATDLGGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGR-QRKGMALSMICREDRE 397
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 99.0 bits (245), Expect = 2e-20
Identities = 104/382 (27%), Positives = 171/382 (44%), Gaps = 29/382 (7%)
Query: 22 IESMGFETMTPVQ-ASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK--EEANSAK 78
++ M TP+Q AS P+ GN DVV + TGSGKT+AF+IP + +L++ E+
Sbjct: 751 LKRMKMNRPTPIQRASFFPIMHGN-DVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVT 809
Query: 79 FKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR-DDINSF 137
+K LI++PTREL +Q L Y ++ L G S + + SF
Sbjct: 810 DEKPSPRLLIVAPTRELVNQTFTTARQ-LTYETG----LKCGLAFGGYSRNANVQHLRSF 864
Query: 138 TDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLN-FQKDVETILKMLPKQ 196
++ ILV T GR+ DF+ V + +VLDEAD+++D N F ++V I+ P +
Sbjct: 865 --SQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGS-PGE 921
Query: 197 R--RTGLFSATI--ESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
R +T LFSA+ + + K + + +P +K
Sbjct: 922 RTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAI 981
Query: 253 XXXXNNYRFKKCIVYFPTC-ISVTYFYAFINHLKELNLI-----QDDLKLFSLHGKLQTQ 306
+ + P I F+N +K + + + S+H +
Sbjct: 982 YKLLG--IDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQE 1039
Query: 307 SRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP--TDADIFIHRCGRTGRA 364
R +TLD F ++ ++V ARG++I +D V+ D P D +++R GRTGRA
Sbjct: 1040 QRDRTLDDFRRGKYQCMV-ASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRA 1098
Query: 365 NRIGKALVFLNEGREEDYVPFL 386
G + F++ + D +P L
Sbjct: 1099 GFTGTSTAFVDVENDTDIIPCL 1120
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 99.0 bits (245), Expect = 2e-20
Identities = 61/173 (35%), Positives = 99/173 (56%), Gaps = 12/173 (6%)
Query: 23 ESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKS 82
E MGFE T VQA IP+ +DV+V + TG+GKTIA++ P++ L + +S K +S
Sbjct: 46 ERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL---QGHSPKVDRS 102
Query: 83 H-FHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
H +L+I PTREL Q+++ +E L + + + ++ G A + +
Sbjct: 103 HGTFALVIVPTRELCLQVYETLEKLLHRFH---WIVPGYVMGGEKKAKEKARLRKGI--- 156
Query: 142 PQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILKML 193
IL+ TPGR+LD L+ T + + V+ DEAD +L+L + K++E I+K+L
Sbjct: 157 -SILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLL 208
Score = 79.3 bits (194), Expect = 1e-14
Identities = 67/243 (27%), Positives = 110/243 (44%), Gaps = 43/243 (17%)
Query: 262 KKCIVYFPTCISVTYFYAFINHL-------------KELNLIQDDLKLFSLHGKLQTQSR 308
+K +V+F T +V + Y+ ++ KEL L K F LHG ++ + R
Sbjct: 332 QKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFL---KCKTFRLHGSMEQEDR 388
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
+F + AVL +TDVAARG+D P V +IQ D P +A ++HR GRT R G
Sbjct: 389 RSAFGTFKTE-KQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKG 447
Query: 369 KALVFLNEGREEDYVPFLEVKNVKLEE-------ESVELKG-VENLTKIF----HDWILH 416
+AL+FL + E DY+ L+ L E + + G + + K+ H W++
Sbjct: 448 EALLFL-QPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLSLESHPWVIS 506
Query: 417 DRARFDH-----------SVRAYVAFIKYYSKHTA--SSIFRFHSMDFIGVANFYGLLRL 463
+ + + A+V++++ Y+ H SIF + VA + L
Sbjct: 507 LQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQ 566
Query: 464 PRM 466
P +
Sbjct: 567 PSL 569
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 98.6 bits (244), Expect = 2e-20
Identities = 67/188 (35%), Positives = 102/188 (53%), Gaps = 16/188 (8%)
Query: 23 ESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKS 82
E + F ++TP+Q+ +P +DV+ S TGSGKTI++++P+L R +K + +K +
Sbjct: 272 EKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLL-RQVKAQRPLSKHETG 330
Query: 83 HFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR- 141
LI++PTRELA QIH+ + F + IRS G S TD +
Sbjct: 331 PM-GLILAPTRELALQIHEEVTKFTEADTS----IRSVCCTGGSEMK-----KQITDLKR 380
Query: 142 -PQILVGTPGRVLDFLQKTNVK---TASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197
+I+V TPGR +D L + K T VV+DEAD+L DL F+ + I+K + +
Sbjct: 381 GTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDK 440
Query: 198 RTGLFSAT 205
+ LFSAT
Sbjct: 441 QCVLFSAT 448
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 98.2 bits (243), Expect = 3e-20
Identities = 68/198 (34%), Positives = 112/198 (56%), Gaps = 23/198 (11%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77
I T + +MT VQ +IP+ +D +V S TGSGKT+A+ IP+++ L +A +
Sbjct: 242 ISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSL---QAMES 298
Query: 78 KFKKSHF-HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVG----TSSASVRD 132
K ++S ++L++ PTRELA Q D ++ LK + + + L+ G + A +R
Sbjct: 299 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRKSEKARLRK 355
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKT-NVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
IN IL+ TPGR++D ++ T N+ + +V DEAD++LDL F+KD+ IL
Sbjct: 356 GIN--------ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN 407
Query: 192 MLP---KQRRTGLFSATI 206
+ ++R+ L SAT+
Sbjct: 408 AVNAECQKRQNVLLSATL 425
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 98.2 bits (243), Expect = 3e-20
Identities = 95/377 (25%), Positives = 164/377 (43%), Gaps = 32/377 (8%)
Query: 25 MGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHF 84
+G + +T +Q +P+ GN+ ++ + TG GKTI +++PI+++L+++E + + K +
Sbjct: 127 LGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTER-KLNTP 185
Query: 85 HSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQI 144
LI++P RELA+QI V E K ++S L T + I
Sbjct: 186 RVLILTPGRELATQIAGVTE---KLTQGTNLKVQSLLGGNTKQLMMNPQFEEV-----DI 237
Query: 145 LVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLP----KQRRTG 200
LV T G + + + +VLDEAD LLD F + L+ P ++ G
Sbjct: 238 LVATLGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAG 297
Query: 201 ----LFSATIESAGAQIFK--TGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXX 254
L SAT+ + +I + ++ ++ + D+
Sbjct: 298 TQMILASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLS 357
Query: 255 XXNNYRFKK--CIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312
+ K+ IV+ + + F+N+ + +L+G + + R+
Sbjct: 358 LVKHDLAKRRPLIVFSNKSTTSDFVSIFLNN--------SGVNCLNLNGDMLMKIRLGRF 409
Query: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372
+ F + D VL TTDV +RG+D V+ D P +IHRCGR GR + KALV
Sbjct: 410 EQFQNGHCD-VLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALV 468
Query: 373 --FLNEGREEDYVPFLE 387
++ RE D V +E
Sbjct: 469 TNLISSRREIDVVQRIE 485
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 95.9 bits (237), Expect = 2e-19
Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 43/261 (16%)
Query: 143 QILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLF 202
+I++ TPG ++D L+ + + C VVLDEAD+++D+ F+ DV+ IL+ +P+
Sbjct: 384 EIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMPQSEARHDE 443
Query: 203 SATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFK 262
S E A F++G R P ++ + + K
Sbjct: 444 SEDPEKMLAN-FESGKRK------------------------PHERVEQVFLMSESEKRK 478
Query: 263 KCIVY----FPTCISVTYFYAFINHLKELNLIQDDLKLF-----SLHGKLQTQSRMKTLD 313
K + F I++ F+N K +++ L+ +LHG + R L
Sbjct: 479 KLLEILKQGFDPAITI-----FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 533
Query: 314 SFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
+ D VL TTDVA GIDI DV +V+ D + D +IHR GR G+A + G A+ F
Sbjct: 534 NLKPGAKD-VLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITF 592
Query: 374 LNEGREEDYVPFLEVKNVKLE 394
L +ED F E+K LE
Sbjct: 593 LT---KEDSAVFYELKQAILE 610
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 95.9 bits (237), Expect = 2e-19
Identities = 105/424 (24%), Positives = 185/424 (42%), Gaps = 61/424 (14%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLF--SGNKDVVVESVTGSGKTIAFVIPILERLIK 71
++P + A+++M F+ T +Q + +PL +++ ++ +G+GKT AFV+ +L R+
Sbjct: 216 LKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI-- 273
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNL---YPIRSQLLVGTSSA 128
+ ++PT ELA QI +V+E K+ DNL Y I+ G + A
Sbjct: 274 ------DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI-DNLKIHYAIK-----GGNMA 321
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVE 187
++R T+ QI++GTPG D+LQK + + +VLDEAD ++ D+
Sbjct: 322 AMRG--RKLTE---QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDIS 376
Query: 188 TILKMLPKQR----RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
T + + + ++ LFSAT + ++ + Y+
Sbjct: 377 TTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQC 436
Query: 244 PPKD-KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGK 302
+D K + +++ T SV + Y N+ ++ LHG
Sbjct: 437 ACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYE--------NMRARGHQVDVLHGD 488
Query: 303 LQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP-------------- 348
+ R T+ F VL TT+V ARGID+ V +VI D P
Sbjct: 489 MTVVERADTIIHFKRG-DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDG 547
Query: 349 ---TDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE----VKNVKLEEES-VEL 400
D + ++HR GRTGR + G A+ ++ + + LE +K +++ + VEL
Sbjct: 548 FTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 607
Query: 401 KGVE 404
+ +E
Sbjct: 608 EAIE 611
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 95.9 bits (237), Expect = 2e-19
Identities = 105/424 (24%), Positives = 185/424 (42%), Gaps = 61/424 (14%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLF--SGNKDVVVESVTGSGKTIAFVIPILERLIK 71
++P + A+++M F+ T +Q + +PL +++ ++ +G+GKT AFV+ +L R+
Sbjct: 241 LKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI-- 298
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNL---YPIRSQLLVGTSSA 128
+ ++PT ELA QI +V+E K+ DNL Y I+ G + A
Sbjct: 299 ------DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI-DNLKIHYAIK-----GGNMA 346
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVE 187
++R T+ QI++GTPG D+LQK + + +VLDEAD ++ D+
Sbjct: 347 AMRG--RKLTE---QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDIS 401
Query: 188 TILKMLPKQR----RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
T + + + ++ LFSAT + ++ + Y+
Sbjct: 402 TTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQC 461
Query: 244 PPKD-KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGK 302
+D K + +++ T SV + Y N+ ++ LHG
Sbjct: 462 ACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYE--------NMRARGHQVDVLHGD 513
Query: 303 LQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP-------------- 348
+ R T+ F VL TT+V ARGID+ V +VI D P
Sbjct: 514 MTVVERADTIIHFKRG-DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDG 572
Query: 349 ---TDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE----VKNVKLEEES-VEL 400
D + ++HR GRTGR + G A+ ++ + + LE +K +++ + VEL
Sbjct: 573 FTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 632
Query: 401 KGVE 404
+ +E
Sbjct: 633 EAIE 636
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 95.9 bits (237), Expect = 2e-19
Identities = 105/424 (24%), Positives = 185/424 (42%), Gaps = 61/424 (14%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLF--SGNKDVVVESVTGSGKTIAFVIPILERLIK 71
++P + A+++M F+ T +Q + +PL +++ ++ +G+GKT AFV+ +L R+
Sbjct: 625 LKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI-- 682
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNL---YPIRSQLLVGTSSA 128
+ ++PT ELA QI +V+E K+ DNL Y I+ G + A
Sbjct: 683 ------DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI-DNLKIHYAIK-----GGNMA 730
Query: 129 SVRDDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKLLDLNFQKDVE 187
++R T+ QI++GTPG D+LQK + + +VLDEAD ++ D+
Sbjct: 731 AMRG--RKLTE---QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDIS 785
Query: 188 TILKMLPKQR----RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
T + + + ++ LFSAT + ++ + Y+
Sbjct: 786 TTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQC 845
Query: 244 PPKD-KXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGK 302
+D K + +++ T SV + Y N+ ++ LHG
Sbjct: 846 ACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYE--------NMRARGHQVDVLHGD 897
Query: 303 LQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP-------------- 348
+ R T+ F VL TT+V ARGID+ V +VI D P
Sbjct: 898 MTVVERADTIIHFKRG-DFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDG 956
Query: 349 ---TDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLE----VKNVKLEEES-VEL 400
D + ++HR GRTGR + G A+ ++ + + LE +K +++ + VEL
Sbjct: 957 FTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 1016
Query: 401 KGVE 404
+ +E
Sbjct: 1017 EAIE 1020
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 94.7 bits (234), Expect = 3e-19
Identities = 95/384 (24%), Positives = 159/384 (40%), Gaps = 35/384 (9%)
Query: 13 EIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE 72
E++ + I GFE + +Q S + + KDV ++S GSGKT+ +I IL+ + E
Sbjct: 2 ELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCE 61
Query: 73 EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132
+A H ++++P R +A + H+ LK NL ++ +
Sbjct: 62 DA--------HLQVILLAPQRGMAQRAHEQ----LKSLGRNL---------NVNATCLGF 100
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
D + D +L+GTP DFL T+ VLDEAD++L F+ + + +
Sbjct: 101 DTTAENDKISHVLMGTP---KDFLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRS 157
Query: 193 LPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKD-KXXX 251
+P+ + L SAT+ S + MR + YI + + K
Sbjct: 158 MPQDVQVVLLSATMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNC 217
Query: 252 XXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKT 311
R + +++ T VT L E L+ +K+ HG ++ R
Sbjct: 218 LCDLLKTSRETQALIFCNTRRRVT-------QLTE-QLMSIPIKVSCFHGNMEHNEREDM 269
Query: 312 LDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKAL 371
+ F S T VL TTD+ ARG++I L+I D + + ++ R GR G G +
Sbjct: 270 VKDFNSRNT-RVLVTTDLMARGMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPI 327
Query: 372 VFLNEGREEDYVPFLEVKNVKLEE 395
F E D + ++EE
Sbjct: 328 SFFTENDISDLKKIENHYSTRIEE 351
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 93.6 bits (231), Expect = 8e-19
Identities = 61/181 (33%), Positives = 93/181 (50%), Gaps = 14/181 (7%)
Query: 31 TPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSL--I 88
TPVQ IP+ +D++ + TGSGKT AF PI+ ++K++ + L I
Sbjct: 183 TPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVI 242
Query: 89 ISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGT 148
+SPTRELASQIHD + F Y +++V + + + ILV T
Sbjct: 243 LSPTRELASQIHDEAKKFS-------YQTGVKVVVAYGGTPINQQLREL-ERGVDILVAT 294
Query: 149 PGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ----RRTGLFSA 204
PGR+ D L++ V + LDEAD++LD+ F+ + I++ + R+T LFSA
Sbjct: 295 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSA 354
Query: 205 T 205
T
Sbjct: 355 T 355
Score = 75.5 bits (184), Expect = 2e-13
Identities = 41/91 (45%), Positives = 51/91 (55%), Gaps = 1/91 (1%)
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
S+HG Q R L +F S T +L TDVAARG+DIP V V+ D P D D ++HR
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTP-ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 358 CGRTGRANRIGKALVFLNEGREEDYVPFLEV 388
GRTGRA + G A F N+G P E+
Sbjct: 506 IGRTGRAGKSGLATAFFNDGNTSLARPLAEL 536
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 92.0 bits (227), Expect = 2e-18
Identities = 92/369 (24%), Positives = 155/369 (41%), Gaps = 32/369 (8%)
Query: 16 PWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEAN 75
P ++ + S F+ TP+Q +P+ + ++ + TGSGKT+AF+ PI+ L
Sbjct: 128 PRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL------ 181
Query: 76 SAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDIN 135
K + +L+++PTRELA QI+ + + +R+ + S A +
Sbjct: 182 -RAHKTTGLRALVLAPTRELAQQIYRECAELTRE-----TGLRTHFISKVSEAKQKH--G 233
Query: 136 SFTDNRPQILVGTPGRVLDFLQKTN--VKTASCGTVVLDEADKLLD---LNFQKDVETIL 190
+ R ILV TP RV LQ+ + + VLDEAD+L++ NF++ ++ I
Sbjct: 234 AECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIY 293
Query: 191 KMLPKQRR-TGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKX 249
+ FSAT A+ ++ + + + +
Sbjct: 294 AACSNPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGK 353
Query: 250 XXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKEL--NLIQDDLKLFSLHGKLQTQS 307
+ +V V F K+L L+ D + + +H +
Sbjct: 354 LVAI---------RDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQ 404
Query: 308 RMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRI 367
R + +F + VL T++ RGID V+LVI D P +IHR GRTGRA R
Sbjct: 405 RDNCVKAFREG-SIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRP 463
Query: 368 GKALVFLNE 376
G+A+ F +
Sbjct: 464 GRAITFFTQ 472
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 91.7 bits (226), Expect = 3e-18
Identities = 62/194 (31%), Positives = 101/194 (51%), Gaps = 15/194 (7%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
++P + AI GFE + VQ IP DV+ ++ +G GKT FV+ L+++ E
Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI--EP 108
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
N L++ TRELA QI E F KY P ++ + G S++ D
Sbjct: 109 VNG------QVTVLVMCHTRELAFQISKEYERFSKYMPS----VKVSVFFG--GLSIKKD 156
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKM 192
N P ++VGTPGR+L ++ + + VLDE DK+L+ L+ ++DV+ I ++
Sbjct: 157 EEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRL 216
Query: 193 LPKQRRTGLFSATI 206
P +++ +FSAT+
Sbjct: 217 TPHEKQCMMFSATL 230
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 91.3 bits (225), Expect = 4e-18
Identities = 97/402 (24%), Positives = 163/402 (40%), Gaps = 69/402 (17%)
Query: 18 IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE-EANS 76
I +I +G+E VQ S I L NK+++ + TGSGKT AF+IP++++LI E + N
Sbjct: 100 ILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTND 159
Query: 77 AKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINS 136
S ++II+PT+EL +QI+ + + P L + + ++ NS
Sbjct: 160 GSVGPS---AVIIAPTKELITQIYKLFVKLSQALP---------FLQAINLCDINEEENS 207
Query: 137 -FTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPK 195
+ ++R ++V TPG++L +V+DEAD LL +++++ I LP
Sbjct: 208 VWLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPP 267
Query: 196 QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXX 255
+ + SAT++ + K M + + +P D+
Sbjct: 268 TYQCLMTSATLKDDMTTLKKLFM-----------TGPVITIKLTEGDLPNSDQLTQYQLT 316
Query: 256 --XNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFS-----LHGKLQTQSR 308
+ RF + F + V F+N + + L++F L+ + SR
Sbjct: 317 CGSDEERFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSR 376
Query: 309 MKTLDSF---------TSNLTDA----------------------------VLFTTDVAA 331
++ F S+++DA L +
Sbjct: 377 CHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVS 436
Query: 332 RGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVF 373
RGID V V+ D P D +IHR GRT R G AL F
Sbjct: 437 RGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSF 478
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 89.4 bits (220), Expect = 1e-17
Identities = 68/239 (28%), Positives = 111/239 (45%), Gaps = 20/239 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEE 73
+ W+ +G + TPVQ IP +D + + TGSGKT AFV+PIL++L ++
Sbjct: 9 LSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDD 133
L+++PTRELA QI + K ++ ++VG +
Sbjct: 69 YG--------IFCLVLTPTRELAYQIAERFRVLGKPLG-----LKDCIIVGGMDMVAQAL 115
Query: 134 INSFTDNRPQILVGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLD---LNFQKDVETI 189
S +P +++ TPGR+ D L+ +N +V+DEAD+LL+ +F D+E I
Sbjct: 116 ELS---RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAI 172
Query: 190 LKMLPKQRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDK 248
L +P +R+T LFSAT+ ++ L Y+++P K K
Sbjct: 173 LAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVK 231
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 88.6 bits (218), Expect = 2e-17
Identities = 90/372 (24%), Positives = 153/372 (40%), Gaps = 28/372 (7%)
Query: 21 AIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANS-AKF 79
A++ F+ +QA K ++ +GSGKT+A+++P+++RL +EE +K
Sbjct: 388 ALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKS 447
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+++ PT ELASQ+ K + P RS +V T R + + +
Sbjct: 448 SPGCPRVIVLVPTAELASQVLANCRSISK----SGVPFRS--MVVTGGFRQRTQLENL-E 500
Query: 140 NRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLL-DLNFQKDVETILKMLPKQRR 198
+L+ TPGR + + + ++ +LDE D L D F+ ++ ++ P +
Sbjct: 501 QGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQ 560
Query: 199 TGLFSAT----IESAGAQIFK-----TGMRXXXXXXXXXXXXXXXXLSINYIVIPP---K 246
+AT I + ++F G R N P +
Sbjct: 561 YLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQ 620
Query: 247 DKXXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQ 306
+K K I++ C + N K ++ + L + H L +
Sbjct: 621 NKKTALLQIMEENPVSKTIIF---CNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQE 677
Query: 307 SRMKTLDSFTSNLTD---AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
SR+ + FTS+ + L TD A+RGID VD V+ D P D ++ R GRT R
Sbjct: 678 SRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTAR 737
Query: 364 ANR-IGKALVFL 374
R GKA +F+
Sbjct: 738 GARGKGKAFIFV 749
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 88.6 bits (218), Expect = 2e-17
Identities = 102/436 (23%), Positives = 167/436 (37%), Gaps = 72/436 (16%)
Query: 21 AIESMGFETMTPVQASTIPLFSGN---------KDVVVESVTGSGKTIAFVIPILERLIK 71
A++ M + + PVQ IP +D+ V + TGSGKT+AF IPI++ L +
Sbjct: 151 ALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQ 210
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ +L++ P ELA Q++ VI + + + Q + +
Sbjct: 211 RVDCKVR-------ALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLV 263
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTN-VKTASCGTVVLDEADKL-----------LD 179
+ ++ I+V TPGR++D L T S +V+DEAD++ LD
Sbjct: 264 EQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLD 323
Query: 180 LNFQKDVETILK-------------MLPKQRRTGLFSATIESAGAQI----------FKT 216
+ ++ + +L KQ LFSAT+ ++ F T
Sbjct: 324 SHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFAT 383
Query: 217 GMRXXXXXXXXXXXXXXXXLSI----------------NYIVIPPKDKXXXXXXXXNNYR 260
+ L+ Y V + K Y+
Sbjct: 384 VLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYK 443
Query: 261 FKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLT 320
+K+ + + + T + L + + K+ L G L + R + L F +
Sbjct: 444 WKRFLCFTNSSDQATRLTFVLKVLFQ----KYSTKVSELSGNLSAKVRNERLRDFAAGKI 499
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
+ L +D ARGID+ DVD+V+ + P +IHR GRT RA R G A+ L E
Sbjct: 500 NG-LICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMT 558
Query: 381 DYVPFLEVKNVKLEEE 396
+ L N L EE
Sbjct: 559 LFKKILSDANKGLGEE 574
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 87.0 bits (214), Expect = 7e-17
Identities = 97/404 (24%), Positives = 176/404 (43%), Gaps = 48/404 (11%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
+W+D ++ + I S+GFET + +Q + I +D+ ++ +G+GKT AF +
Sbjct: 39 TWEDYG--LKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAA 96
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGT 125
L+ + L+++ TRE+A+Q ED + R LL G
Sbjct: 97 LQ--------ICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMG-----ARVALLSGG 143
Query: 126 SSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKD 185
S + D + + +P I+VGTPGRV + + + V+DEAD++L FQ+
Sbjct: 144 SPIAA-DKVA--LEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQ 200
Query: 186 VETILKMLPK--QRRTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVI 243
V++I + + + + +FSAT + ++ + + + +I +
Sbjct: 201 VKSIFRRITNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDL 260
Query: 244 ---PPKDKXXXXXXXXNNYRFKKCIVYFPTCIS--VTYFYAFINHLKELNLIQD-----D 293
PP K +Y K + + + FIN ++ ++ D +
Sbjct: 261 RKEPPFRK------GREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHE 314
Query: 294 LKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT--DA 351
+ + +L R +TL+ F T L ++ + +RGIDI ++ +V LD P+
Sbjct: 315 WECELISAELTQAERERTLNRFRGG-TGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERK 373
Query: 352 DIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEE 395
+IHR GR+GR R G A+ + E E+KN+K E
Sbjct: 374 STYIHRIGRSGRYGRKGIAINIVYEH---------ELKNLKAIE 408
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 82.8 bits (203), Expect = 1e-15
Identities = 85/383 (22%), Positives = 167/383 (43%), Gaps = 55/383 (14%)
Query: 45 KDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIE 104
+DV + + TGSGKTI +V+P+L + + + + ++I+ P + L +QI ++
Sbjct: 260 RDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQ-------AVILVPVQTLVAQI---VD 309
Query: 105 DFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKT---NV 161
+F ++ ++ ++++ + + + + P ++V TP R++ L +
Sbjct: 310 EFKRWNDESGV---AKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPI 366
Query: 162 KTASCGTVVLDEADKLLDLNFQKDVETI------------LKMLPKQRRTG---LFSATI 206
+ +++DEAD++ L ++ ++ + LK + +QRR + SAT+
Sbjct: 367 DLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATL 426
Query: 207 ESAGAQI-----FKTGMRXXXXXXXXXXXXXX-------------XXLSINYIVIPPKDK 248
++ FK + +S +V PK
Sbjct: 427 SKDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFH 486
Query: 249 XXXXXXXXNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSR 308
+F + +++ V+ + LKEL Q ++ F+ +L + R
Sbjct: 487 PLAVYQQITRNKFNRTLIFVN---EVSSSNRLAHVLKELCKDQFEVDYFT--AQLFGKRR 541
Query: 309 MKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIG 368
K L+ F N + VL +DV ARG D+ VD VI + P D +F+HR GRTGRA + G
Sbjct: 542 YKMLEKFNKN-ENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDG 600
Query: 369 KALVFLNEGREEDYVPFLEVKNV 391
+ ++ + +V L+V N+
Sbjct: 601 YVISVGDKESKRLFVKMLKVTNL 623
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 82.4 bits (202), Expect = 2e-15
Identities = 100/406 (24%), Positives = 171/406 (41%), Gaps = 59/406 (14%)
Query: 25 MGFETMTPVQASTIPLFSG--NKDVVVESVTGSGKTIAFVIPILERL---IKEEANSAKF 79
M FE + +QA ++P+ +K ++ ++ GSGKT FV+ +L R+ ++E
Sbjct: 110 MKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREP------ 163
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTD 139
+L I PTRELA+Q +V++ K+ I ++L V S+ + T
Sbjct: 164 -----QALCICPTRELANQNMEVLQKMGKFTG-----ITAELAVPDSTRGAP----AATR 209
Query: 140 NRP---QILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLN-FQKDVETILKMLPK 195
P +++GTPG + ++ + +V DEAD +L + F+ D I+K + +
Sbjct: 210 GAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGR 269
Query: 196 QR---RTGLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXX 252
+ LFSAT ++ + Y V+ PK++
Sbjct: 270 VNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVK-QYKVVCPKEQNKIE 328
Query: 253 XXXXNNYRFK---KCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRM 309
+ I++ T S + + + + S+HG L R
Sbjct: 329 VIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEM--------GYDVTSVHGNLTESDRD 380
Query: 310 KTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPT-------DADIFIHRCGRTG 362
K + F LT VL TDV ARG D V+LV+ + PT D ++++HR GR G
Sbjct: 381 KIVKEFKECLTQ-VLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAG 439
Query: 363 RANRIGKAL-VFLNEGREEDYVPFLE------VKNVKLEEESVELK 401
R R G + L++G +++ + +E VK +K E K
Sbjct: 440 RFGRKGAVFNLLLDDGWDKEVMEKIEKYFEANVKEIKSWNSEEEYK 485
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 82.0 bits (201), Expect = 2e-15
Identities = 62/217 (28%), Positives = 101/217 (45%), Gaps = 15/217 (6%)
Query: 166 CGTVVLDEADKLLDLNFQKDVETIL---KMLPKQRR-TGLFSATIESAGAQIFKTGMRXX 221
C +VLDEAD++LD+ F+ + I+ +M K+ R T +FSAT + + ++
Sbjct: 11 CRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKEN 70
Query: 222 XXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFKKCI--VYFPTCISVTYFYA 279
+ IV +D+ + + V+ T +
Sbjct: 71 YVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAY 130
Query: 280 FINHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDV 339
++N + + ++ ++HG L+ R K LD F + T +L T VAARG+DIP+V
Sbjct: 131 YLN--------RQNYEVVTIHGDLKQFEREKHLDLFRTG-TAPILVATAVAARGLDIPNV 181
Query: 340 DLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
VI D P+D D ++HR GRTGR +G A F N+
Sbjct: 182 KHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFND 218
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 72.4 bits (176), Expect = 2e-12
Identities = 65/191 (34%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 22 IESMGFETMTPVQ-ASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK--EEANSAK 78
++ M TP+Q AS P+ G+ DVV + TGSGKT+AF+IP + +L++ E+
Sbjct: 714 LKRMKMNRPTPIQRASFFPIMHGD-DVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVT 772
Query: 79 FKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR-DDINSF 137
+K LI++PTREL +Q L Y ++ L G S + + SF
Sbjct: 773 DEKPSPRLLIVAPTRELVNQTFTTARQ-LTYETG----LKCGLAFGGYSRNANVQHLRSF 827
Query: 138 TDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKMLPKQ 196
++ ILV T GR+ DF+ V + +VLDEAD+++D ++F ++V I+ P +
Sbjct: 828 --SQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGS-PGE 884
Query: 197 R--RTGLFSAT 205
R +T LFSA+
Sbjct: 885 RTQQTVLFSAS 895
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 71.2 bits (173), Expect = 4e-12
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 36/198 (18%)
Query: 31 TPVQASTIPLFSGN------KDVVVESVTGSGKTIAFVIPILERLIKEEANSAKF----- 79
+P+Q I S N + + + TGSGKT+A++IP+++ L ++E + +
Sbjct: 138 SPIQTVAIKRISKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETLR 197
Query: 80 KKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSS------ASVRDD 133
K S+I+ PT EL Q+++ + +++ L+G +S S RD
Sbjct: 198 KNVLIRSIILVPTHELVDQVYETVS-------------KTKTLLGLNSFKWDKATSYRDL 244
Query: 134 INSFTDNRPQILVGTPGRVLDF-----LQKTNVKTASCGTVVLDEADKLLDLNFQKDVET 188
+ + NR ILV TPG++L+ + + + + G VVLDEAD LLD ++ ++ +
Sbjct: 245 LENIK-NRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHS 303
Query: 189 ILKMLPKQRRTGLFSATI 206
+K +P SATI
Sbjct: 304 AIKRIPNINHLIFCSATI 321
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 71.2 bits (173), Expect = 4e-12
Identities = 36/91 (39%), Positives = 54/91 (58%), Gaps = 1/91 (1%)
Query: 293 DLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDAD 352
D LH + + R+K L+ F + T +L TDVAARG+DIP+V+ VI P ++
Sbjct: 569 DCNPLPLHANMIQKQRLKNLERFRDSPT-GLLIATDVAARGLDIPNVEHVIHYQVPRTSE 627
Query: 353 IFIHRCGRTGRANRIGKALVFLNEGREEDYV 383
++HR GRT RAN+ G ++F+ G + YV
Sbjct: 628 NYVHRSGRTARANKHGITVMFMEPGEVKSYV 658
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 69.7 bits (169), Expect = 1e-11
Identities = 50/157 (31%), Positives = 79/157 (49%), Gaps = 19/157 (12%)
Query: 39 PLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQ 98
P++S DV V + TGSGKT+++VIPI++ L ++I PTREL Q
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTV-------PRLRCVVIVPTRELTVQ 220
Query: 99 IHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDN----RPQILVGTPGRVLD 154
+ E YY + Q+ T S+R + + R +LV TPGR++D
Sbjct: 221 VAKTFE----YY---MSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
Query: 155 FLQK-TNVKTASCGTVVLDEADKLLDLNFQKDVETIL 190
++ + +V+DEAD+LLD +FQ V+T++
Sbjct: 274 HIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 69.7 bits (169), Expect = 1e-11
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 14 IQPWIRTAIESMGFETMTP--VQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK 71
++P + A++ E + P VQ+STIP + VV + TGSGKT+++++P+L+RL+
Sbjct: 133 LEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLG 192
Query: 72 EEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR 131
+ + + L++ P+RELA Q+ V + + +L + L G +R
Sbjct: 193 QPSLDS-LPIPAPRGLVLVPSRELAQQVRAVAQPLGR----SLGLLVRDLEGGHGMRRIR 247
Query: 132 DDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILK 191
++ +LV TPG + L+ + +VLDEAD LLD +F + V+ IL+
Sbjct: 248 LQLS--RQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILE 305
Score = 51.2 bits (121), Expect = 4e-06
Identities = 30/79 (37%), Positives = 42/79 (52%), Gaps = 3/79 (3%)
Query: 287 LNLIQDDLKL--FSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQ 344
L I DD K+ L G++ R+ SF + D +L TD+A+RG+D V+LV+
Sbjct: 413 LGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRD-ILLCTDIASRGLDSTGVELVVN 471
Query: 345 LDPPTDADIFIHRCGRTGR 363
D P +IHR GR GR
Sbjct: 472 YDFPPTLQDYIHRAGRVGR 490
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 65.9 bits (159), Expect = 2e-10
Identities = 39/85 (45%), Positives = 51/85 (59%), Gaps = 2/85 (2%)
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LHG + R TL F + + VL T+VAA + IP+VDLVIQ PP D + IHR
Sbjct: 595 LHGDIAQSQREITLKGFRED-SFKVLVATNVAAHSLHIPEVDLVIQHSPPQDVEARIHRS 653
Query: 359 GRTGRANRIGKALVFLNEGREEDYV 383
G TGRA + G VF+N+ +EE +V
Sbjct: 654 GCTGRAGQ-GFVYVFINQEKEEIWV 677
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 65.1 bits (157), Expect = 3e-10
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE- 72
+ WI I++ G++ TPVQ +IP G +D++ + TGSGKT AF++P++ ++++
Sbjct: 370 LHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDG 429
Query: 73 -------EANSAKFKKSHFHSLIISPTRELASQI 99
+S KK + +L++SPTREL+ Q+
Sbjct: 430 PDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 64.7 bits (156), Expect = 4e-10
Identities = 41/115 (35%), Positives = 61/115 (52%), Gaps = 2/115 (1%)
Query: 304 QTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGR 363
Q RM+ + F AVLF +DVAARG+D P V+ +Q D P DA+ +IHR GRT R
Sbjct: 217 QQMRRMEVYNEFVRKRA-AVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTAR 275
Query: 364 ANRIGKALVFLNEGREEDYVPFLEVKNVKLEEESVELKGVENLTKIFHDWILHDR 418
G+AL+ L E+ V L K V ++E + + + ++ K + D+
Sbjct: 276 YKEDGEALLIL-LASEKAIVQQLLQKKVPIKEIKINPEKLIDIQKKLESFSAEDQ 329
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 64.7 bits (156), Expect = 4e-10
Identities = 87/339 (25%), Positives = 140/339 (40%), Gaps = 55/339 (16%)
Query: 33 VQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-EEANSAKFKKSHFHSLIISP 91
VQ +I + + +VVE+ TG GKT AF+IP +E ++ ++N + K LI++
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 92 TRELASQIHDVIEDFLKYY-PDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPG 150
T L Q+ + E L DN+ PIR + + A+ + FT + I T G
Sbjct: 79 TSALVDQLFNRCELILGLQCMDNVEPIR-DIKIDKLVAN-----HPFTKGQCDIAFCTIG 132
Query: 151 RVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKMLPKQRRTGL----FSAT 205
++ ++ +V + T++LDEADK++D F D+ IL L ++ L FSAT
Sbjct: 133 KLKATIECGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSAT 192
Query: 206 I-ESAGAQIFKT--GMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNYRFK 262
++A I T MR ++I + + Y FK
Sbjct: 193 YNKNANGTIALTVLQMRMLGEDDPCKDGPYNETIAI-FCETVQRVTQVTMTLRQLGYNFK 251
Query: 263 KCIVYFPTCISVTYFYAFINHLKELNLIQ-DDLKLFSLHGKLQTQSRMKTLDSFTSNLTD 321
P C +T K L+ +DL+ +HG
Sbjct: 252 ------PVCSMIT---------KNQQLVTVNDLEFRKIHG-------------------- 276
Query: 322 AVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGR 360
+ T++ ARGID+ V I ++ D D + HR GR
Sbjct: 277 --VVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGR 313
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 64.7 bits (156), Expect = 4e-10
Identities = 57/184 (30%), Positives = 92/184 (49%), Gaps = 13/184 (7%)
Query: 29 TMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIK-EEANSAKFKKSHFHSL 87
T VQ +I + + +VVE+ TG GKT AF+IP +E +K ++N ++ K L
Sbjct: 115 TFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSIL 174
Query: 88 IISPTRELASQIHDVIEDFLKYY-PDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILV 146
I++ T L Q+ + E L DN+ PIR + + A+ + FT + I
Sbjct: 175 IMASTSALVDQLFNRCELILGLQCMDNVEPIR-DIKIDKLVAN-----HPFTKGQCDIAF 228
Query: 147 GTPGRVLDFLQKTNVKTASCGTVVLDEADKLLD-LNFQKDVETILKMLPKQRRTGL---- 201
T G++ ++ +V + T++LDEADK++D F D+ IL L ++ L
Sbjct: 229 CTIGKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCF 288
Query: 202 FSAT 205
FSAT
Sbjct: 289 FSAT 292
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 64.7 bits (156), Expect = 4e-10
Identities = 79/383 (20%), Positives = 157/383 (40%), Gaps = 35/383 (9%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
+E G++ TP+QA T + K++V+ S G+GKT+ +++P + ++ + + KK
Sbjct: 47 LEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKM-HNQRGLMQHKK 105
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
LI+ RE A + + Y N +R+ L+G S + +
Sbjct: 106 GPI-VLILVDCREAAVMVQREV-----LYYTNPLELRTHCLLGNSQWQGHAECD------ 153
Query: 142 PQILVGTPGRVLDFL--QKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRT 199
+LV + GR+L + +K V+ C +VLD D+++D+ + ++ +L L +
Sbjct: 154 --LLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHAQL 211
Query: 200 GLFSATIESAGAQIFKTGMRXXXXXXXXXXXXXXXXLSINYIVIPPKDKXXXXXXXXNNY 259
+ S+T S+ K + + I + +
Sbjct: 212 -IVSSTSWSSN---LKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVERL 267
Query: 260 RFKKCIVYFPTCI--SVTYFYAFINHLKEL-NLIQDDLKLFSLHGKLQTQSRMKTLDSFT 316
+ +Y + I V + ++EL +LI++ + +HG Q + F
Sbjct: 268 MKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCEGIHGGRTAQENQGIIHDFG 327
Query: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376
+ + ++ T + + +D+P + VI D P + D ++ R RTG L+
Sbjct: 328 TGAYN-IIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTG----------CLSY 376
Query: 377 GREEDYVPFLEVKNVKLEEESVE 399
R + + F + N KL E V+
Sbjct: 377 NRNCEVISFFTMANYKLVTEVVD 399
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 61.2 bits (147), Expect = 4e-09
Identities = 31/92 (33%), Positives = 51/92 (54%), Gaps = 1/92 (1%)
Query: 289 LIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPP 348
L Q++L LHG + R +L+ F + L +DV ARG+D+ V VI + P
Sbjct: 549 LQQNNLSAACLHGDRSAEERQSSLEGFKKGII-RFLVCSDVVARGLDVQGVPFVISVTLP 607
Query: 349 TDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
+ +++HR GR GRA R+G ++ ++E E+
Sbjct: 608 DEKSMYVHRIGRVGRAERMGLSISLVSEYEEK 639
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 60.8 bits (146), Expect = 6e-09
Identities = 53/200 (26%), Positives = 90/200 (44%), Gaps = 23/200 (11%)
Query: 4 SLSWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVI 63
++SW L + + A+ GF+ + QA IP KDV+V + TGSGKT ++
Sbjct: 79 TVSWKSLG--LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLA 136
Query: 64 PILERLIKEEANSAKFKKSHFH------SLIISPTRELASQIHDVIEDFLKYYPDNLYPI 117
PI+++L +S + SLI+ P L Q+ ++ + D +
Sbjct: 137 PIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVD--EDGNPLL 194
Query: 118 RSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQ---KTNVKTASC-GTVVLDE 173
R + + G+ + D P I+V TP +L+ ++ ++ C VV DE
Sbjct: 195 RVEAVCGS---------QGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDE 245
Query: 174 ADKLLDLNFQKDVETILKML 193
AD LL +FQ + ++ ML
Sbjct: 246 ADMLLCGSFQNQIIRLINML 265
Score = 53.9 bits (128), Expect = 7e-07
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 280 FINHLKELNLIQDDLKLFSL-----HGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGI 334
F N ++ + + D L+ S+ H + R L F T V TD AARG+
Sbjct: 430 FANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE--TGGVFVCTDAAARGV 487
Query: 335 DIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
D+P+V VIQ D + A F+HR GRT RA + G E +
Sbjct: 488 DVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRD 533
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 60.1 bits (144), Expect = 9e-09
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 284 LKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVI 343
+K+ L D + ++HG + + R + + S + VL TTD+ RGID+ + LVI
Sbjct: 144 VKKEELTLKDFTVSAMHGDMDQKERDVVMREYRSG-SSRVLITTDLLPRGIDVQQLSLVI 202
Query: 344 QLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGR 378
DPPT+ + +IHR GR G+ G A+ + E +
Sbjct: 203 NYDPPTNRENYIHRIGRGGQFGHKGVAINMVAEDK 237
Score = 50.4 bits (119), Expect = 7e-06
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 142 PQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGL 201
P I++GTPGRV D L + VLDEAD++L F+ + I +ML + L
Sbjct: 60 PHIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSNTQVVL 119
Query: 202 FSATIESAGAQIFKTGMR 219
SATI S ++ K MR
Sbjct: 120 LSATIPSDVLEVTKKFMR 137
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 58.5 bits (140), Expect = 3e-08
Identities = 44/142 (30%), Positives = 71/142 (49%), Gaps = 11/142 (7%)
Query: 73 EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132
+ KF + +LI+ P+RELA Q + I+ F KY + +R L++G +A RD
Sbjct: 276 QVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNP--KLRELLIIGGVAA--RD 331
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
+ S +N I+VGTPGR+ D + + + +VLDEAD LL + + +
Sbjct: 332 QL-SVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ 390
Query: 193 LPKQRRTG------LFSATIES 208
+P+ G + SAT+ S
Sbjct: 391 IPQVTSDGKRLQVIVCSATLHS 412
Score = 55.8 bits (133), Expect = 2e-07
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LHG + R + L+ F L TDVAARGIDI V VI + P + ++HR
Sbjct: 545 LHGDRKPHERKQNLERFKKGDV-RFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRI 603
Query: 359 GRTGRANRIGKALVFLNEGREE 380
GR GRA R+G A+ + +E+
Sbjct: 604 GRVGRAERMGLAISLVATEKEK 625
Score = 50.1 bits (118), Expect = 1e-05
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 14 IQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILE---RLI 70
+ P I A+E M + T +QA +IPL G DV++ + TGSGKT AF IP+++ +
Sbjct: 9 VMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL 68
Query: 71 KEEANSAKFK 80
K++ K K
Sbjct: 69 KDQQEGKKGK 78
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 58.5 bits (140), Expect = 3e-08
Identities = 44/123 (35%), Positives = 67/123 (53%), Gaps = 7/123 (5%)
Query: 74 ANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVR-D 132
A SAK + ++I+ P+RELA Q ++ IE F KY+ N +RS LL+G VR +
Sbjct: 277 APSAKPAPNAPQAIIMEPSRELAEQTYNQIEKF-KYHLSNP-EVRSLLLIG----GVRLE 330
Query: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192
+ + I+VGTPGR+ + + V C VLDEAD LL + + ++ + K
Sbjct: 331 EQKAQLMQGTHIVVGTPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQ 390
Query: 193 LPK 195
+PK
Sbjct: 391 IPK 393
Score = 56.2 bits (134), Expect = 1e-07
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 299 LHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRC 358
LHG + Q R + L+ F L TDVAARG+DI + +I + P D ++HR
Sbjct: 538 LHGDRKPQERKENLEMFKRQQVK-FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596
Query: 359 GRTGRANRIGKAL 371
GR GRA R+G A+
Sbjct: 597 GRVGRAERMGLAI 609
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 55.1 bits (131), Expect = 3e-07
Identities = 28/69 (40%), Positives = 41/69 (58%), Gaps = 1/69 (1%)
Query: 298 SLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHR 357
SLHG + R ++ F + + VL T VAARG+D+ ++ LV+ D P + ++HR
Sbjct: 280 SLHGGIDQHDRDSSIADFKTGVIK-VLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHR 338
Query: 358 CGRTGRANR 366
GRTGRA R
Sbjct: 339 VGRTGRAGR 347
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 54.7 bits (130), Expect = 4e-07
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 140 NRPQILVGTPGRVLDFLQKTN---VKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQ 196
N I+V T GR+LD +Q T K C +V+DEAD++LD+ F+++++ I+K+L
Sbjct: 15 NGINIIVATSGRLLDHMQNTPGFMYKNLQC--LVIDEADRILDVGFEEELKQIIKLLLTH 72
Query: 197 RRTGLFSAT 205
R+T LFSAT
Sbjct: 73 RQTMLFSAT 81
>Hs17474221 [A] KOG0345 ATP-dependent RNA helicase
Length = 140
Score = 54.7 bits (130), Expect = 4e-07
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 392 KLEEESVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIKYYSKHTASSIFRFHSMDF 451
K E E++ K +L L +++ F+ ++A+V++++ Y+K +++DF
Sbjct: 28 KQEVENLGRKNTADLLPKLKSMTLAEKSVFEKGMKAFVSYVQAYAK--------LNNLDF 79
Query: 452 IGVANFYGLLRLPRMPEITRYAADQIPEEGWLVSPPVNLDTFAYLDKQKEKARLQELQNL 511
+A + LLR+P+MPE+ Q P+ V +N DT ++ DK +EK R + L+
Sbjct: 80 ASLARGFSLLRMPKMPEL---RGKQFPD---FVPVDINTDTISFKDKIREKQRQKLLEQQ 133
Query: 512 KQ 513
++
Sbjct: 134 RK 135
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 52.8 bits (125), Expect = 1e-06
Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 6 SWDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPI 65
S++DLK ++ F++ Q IP F +V+V++ TGSGKT+++ +P+
Sbjct: 35 SFEDLKTKVP-----------FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPL 83
Query: 66 LERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDF-------LKYYPDNLYPI- 117
+E + I+ P + L Q++ V+ + + Y D
Sbjct: 84 VEMA----------RGRSLFGAILVPGKPLVRQVYRVVREIKHEGLKVVGVYGDGREDFL 133
Query: 118 -----RSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLD 172
+ +L+ +R+ I ++L+GTP VL + + ++ + +V+D
Sbjct: 134 VEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMSEIRNVT--HLVID 191
Query: 173 EADKLLDLNFQKDVETILKMLPKQR-RTGLFSATIESAGAQIFKT 216
EAD L++ +IL ++ + FSAT+ +++ +T
Sbjct: 192 EADLLINPETVGVFASILSVIEMEDIHISCFSATMNEYVSEVIET 236
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 52.0 bits (123), Expect = 3e-06
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 22 IESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKK 81
I MG++ +P Q +IP+ +D++ + G+GK+ A IP+L+RL KK
Sbjct: 64 IFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRL--------DLKK 115
Query: 82 SHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNR 141
+++I PT A Q+ + K+ ++++ T + DD+ D+
Sbjct: 116 DTIQTIVIVPTGGPALQVSQICIQVSKHMGG------VKVVMTTGGTNSGDDVLRL-DDT 168
Query: 142 PQILVGTPGRVLDFLQK 158
+++ PGR+L+ ++K
Sbjct: 169 VHMVIAAPGRILNLIKK 185
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 51.6 bits (122), Expect = 3e-06
Identities = 41/127 (32%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 262 KKCIVYFPTCISVTYFYAFINHLKELNLIQDD-LKLFSLHGKLQTQSRMKTLDSFTSNLT 320
+KCI+ F + + T K LN D +K G L R K L +F
Sbjct: 288 EKCII-FTSSVETTRRLC-----KLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDI 341
Query: 321 DAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREE 380
VL +D RG+D+ V VI D P A FIHR GRT RA + G+ L+
Sbjct: 342 Q-VLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVR 400
Query: 381 DYVPFLE 387
+ LE
Sbjct: 401 RFSKLLE 407
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 51.2 bits (121), Expect = 4e-06
Identities = 42/167 (25%), Positives = 82/167 (48%), Gaps = 9/167 (5%)
Query: 30 MTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHS-LI 88
+ VQ +I + ++V++ TG GKT AF+IP +E ++E + + LI
Sbjct: 115 LNAVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILI 174
Query: 89 ISPTRELASQIHDVIEDFLKYYP-DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVG 147
++ T L Q+ + E L +++ PIR + + AS + FT ++ I
Sbjct: 175 LANTNSLVEQLFNRCEVLLGLIDMEDIIPIR-DIKIEKLVASYQ-----FTKDQCDIAFC 228
Query: 148 TPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLN-FQKDVETILKML 193
T G++ ++ + + ++LDE+DK++D+ F D++ +L L
Sbjct: 229 TMGKLKASIEDKTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQL 275
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,868,895
Number of Sequences: 60738
Number of extensions: 1267531
Number of successful extensions: 4973
Number of sequences better than 1.0e-05: 236
Number of HSP's better than 0.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3945
Number of HSP's gapped (non-prelim): 427
length of query: 596
length of database: 30,389,216
effective HSP length: 112
effective length of query: 484
effective length of database: 23,586,560
effective search space: 11415895040
effective search space used: 11415895040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)