ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3888 good G KOG3111 Carbohydrate transport and metabolism D-ribulose-5-phosphate 3-epimerase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3888 1345080 1345790 237
(237 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL121c [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 345 3e-95
Hs14746517 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 239 2e-63
CE27934 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 238 5e-63
Hs14727532 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 233 2e-61
SPAC31G5.05c [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 220 1e-57
At3g01850 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 219 2e-57
At1g63290 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 219 3e-57
7304193_2 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 214 1e-55
At5g61410 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 160 2e-39
ECU06g1040 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 83 3e-16
Hs20476519 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase 63 3e-10
>YJL121c [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 238
Score = 345 bits (885), Expect = 3e-95
Identities = 167/238 (70%), Positives = 196/238 (82%), Gaps = 2/238 (0%)
Query: 1 MVRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVI 60
MV+ IIAPSILASDF LGCECH VIN+GADWLHID+MDGHFVPN++LGQP+V SLR+ +
Sbjct: 1 MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSV 60
Query: 61 GKYNDPDT--KLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVALVKLIKK 118
+ D K P AFFDCHMMV PE+WV+DFA+ G DQFTFHYEAT+DP+ LVKLIK
Sbjct: 61 PRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKS 120
Query: 119 HGMKAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNL 178
G+KAAC++KPGT VDVL+ELAP LDMALVMTVEPGFGGQKFM DMM KV+ LR +FP+L
Sbjct: 121 KGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHL 180
Query: 179 NIQVDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDALVTKGLYE 236
NIQVDGGLGK+ + AA+AGANVIVAGTSVF A DP DVI FMK +V+ L ++ L +
Sbjct: 181 NIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLLD 238
>Hs14746517 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 228
Score = 239 bits (610), Expect = 2e-63
Identities = 120/229 (52%), Positives = 162/229 (70%), Gaps = 9/229 (3%)
Query: 6 IAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIGKYND 65
I PSIL SD LG +C +++SGAD+LH+D+MDGHFVPN++ G PVVESLRK +G+ D
Sbjct: 7 IGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQ--D 64
Query: 66 PDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVALVKLIKKHGMKAAC 125
P FFD HMMVS+PE+WV+ A +Q+TFH EAT++P L+K I+++GMK
Sbjct: 65 P-------FFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGL 117
Query: 126 SVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLNIQVDGG 185
++KPGT V+ L A +DMALVMTVEPGFG QKFM DMM KV LRT+FP+L+I+ DGG
Sbjct: 118 AIKPGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGG 177
Query: 186 LGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDALVTKGL 234
+G V AEAGAN+ V+G+++ R+ DP VI ++ ++A + L
Sbjct: 178 VGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSL 226
>CE27934 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 227
Score = 238 bits (607), Expect = 5e-63
Identities = 117/231 (50%), Positives = 158/231 (67%), Gaps = 12/231 (5%)
Query: 2 VRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIG 61
+R + PSIL +D L EC ++ +GADWLH+D+MDGHFVPN++ G PVVESLRK +G
Sbjct: 3 LRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLG 62
Query: 62 KYNDPDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVA---LVKLIKK 118
FFD H+MVS P +WVE A+ G QFTFHYEA VA L++ I+K
Sbjct: 63 A---------EPFFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRK 113
Query: 119 HGMKAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNL 178
GMK SVKPGT V+ + + A LD AL+MTVEPGFGGQKFM +MM KV+ +R+++PNL
Sbjct: 114 SGMKVGLSVKPGTSVEHILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNL 173
Query: 179 NIQVDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDAL 229
IQVDGG+ +N+E++A+AGAN IV+GT + +A D + + ++ V A+
Sbjct: 174 TIQVDGGVTPENIEISAQAGANAIVSGTGIIKAADQSVAMTTIRNAVEAAI 224
>Hs14727532 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 203
Score = 233 bits (594), Expect = 2e-61
Identities = 115/210 (54%), Positives = 156/210 (73%), Gaps = 9/210 (4%)
Query: 25 VINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIGKYNDPDTKLPRAFFDCHMMVSEP 84
+++SGAD+LH+D+MDGHFVPN++ G PVVESLRK +G+ DP FFD HMMVS+P
Sbjct: 1 MLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQ--DP-------FFDMHMMVSKP 51
Query: 85 ERWVEDFARIGCDQFTFHYEATKDPVALVKLIKKHGMKAACSVKPGTPVDVLYELAPSLD 144
E+WV+ A G +Q+TFH EAT++P AL+K I+++GMK ++KPGT V+ L A +D
Sbjct: 52 EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQID 111
Query: 145 MALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLNIQVDGGLGKQNVELAAEAGANVIVA 204
MALVMTVEPGFGGQKFM DMM KV LRT+FP+L+I+VDGG+G V AEAGAN+IV+
Sbjct: 112 MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVS 171
Query: 205 GTSVFRAHDPADVIGFMKTKVNDALVTKGL 234
G+++ R+ DP VI ++ ++A + L
Sbjct: 172 GSAIMRSEDPRSVINLLRNVCSEAAQKRSL 201
>SPAC31G5.05c [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 228
Score = 220 bits (561), Expect = 1e-57
Identities = 111/232 (47%), Positives = 150/232 (63%), Gaps = 8/232 (3%)
Query: 1 MVRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVI 60
MV+A IAPS+LA DF L E ++ G+DWLH+D+MD FVPN+++G VV+++R
Sbjct: 1 MVQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHY 60
Query: 61 GKYNDPDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVALVKLIKKHG 120
K AFFDCH+MV EPER+++ A G F FHYEAT+ ++ + G
Sbjct: 61 TK--------EEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKG 112
Query: 121 MKAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLNI 180
M C++KP TPV+V+ LDM LVMTVEPG GGQ FM + + KV+ LR ++P LN+
Sbjct: 113 MLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNV 172
Query: 181 QVDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDALVTK 232
+VDGGL + V+ AA+AGANVIVAGT+VF A P +VI ++ V A TK
Sbjct: 173 EVDGGLSLKTVDAAADAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQETK 224
>At3g01850 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 233
Score = 219 bits (559), Expect = 2e-57
Identities = 120/243 (49%), Positives = 155/243 (63%), Gaps = 23/243 (9%)
Query: 1 MVRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMD--------GHFVPNMSLGQPV 52
MV IAPS+L+SDF L E + +I+ GA+WLH+DIM GHFVPN+++G PV
Sbjct: 1 MVSPKIAPSMLSSDFANLAAEANRMIDLGANWLHMDIMVPTFYSLLWGHFVPNLTIGAPV 60
Query: 53 VESLRKVIGKYNDPDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDP-VA 111
+ESLRK A+ DCH+MV+ P +V A+ G FTFH E +D
Sbjct: 61 IESLRKHTN-----------AYLDCHLMVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQ 109
Query: 112 LVKLIKKHGMKAACSVKPGTPVDVLYELAPS---LDMALVMTVEPGFGGQKFMADMMSKV 168
LV+ IK GM+ ++KPGTPV+ +Y L ++M LVMTVEPGFGGQKFM DMM KV
Sbjct: 110 LVEKIKSTGMRPGVALKPGTPVEQVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKV 169
Query: 169 KDLRTRFPNLNIQVDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDA 228
+ LR ++P L+IQVDGGLG ++ AA AGAN IVAG+SVF A +P DVI ++T V A
Sbjct: 170 RALRQKYPTLDIQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTSVEKA 229
Query: 229 LVT 231
T
Sbjct: 230 QPT 232
>At1g63290 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 227
Score = 219 bits (558), Expect = 3e-57
Identities = 114/227 (50%), Positives = 149/227 (65%), Gaps = 15/227 (6%)
Query: 6 IAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIGKYND 65
IAPS+L+SDF L E +I+ GA+WLH+DIMDGHFV N+++G PV+ESLRK
Sbjct: 8 IAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTN---- 63
Query: 66 PDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDP-VALVKLIKKHGMKAA 124
A+ DCH+MV+ P +V+ A+ G FTFH E ++ LVK IK GM+
Sbjct: 64 -------AYLDCHLMVTNPMDYVDQMAKAGASGFTFHVEVAQENWQELVKKIKAAGMRPG 116
Query: 125 CSVKPGTPVDVLYELAPS---LDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLNIQ 181
++KPGTPV+ +Y L ++M LVMTVEPGFGGQKFM MM KV+ LR ++P L+I+
Sbjct: 117 VALKPGTPVEQVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRNKYPTLDIE 176
Query: 182 VDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDA 228
VDGGLG ++ AA AGAN IVAG+SVF A P DVI ++ V A
Sbjct: 177 VDGGLGPSTIDAAAAAGANCIVAGSSVFGAPKPGDVISLLRASVEKA 223
>7304193_2 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 221
Score = 214 bits (544), Expect = 1e-55
Identities = 108/228 (47%), Positives = 151/228 (65%), Gaps = 10/228 (4%)
Query: 2 VRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIG 61
V+A I PSIL +D + L E ++++GAD+LH+D+MDG FVPN++ G P+V+SLR
Sbjct: 3 VQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRN--- 59
Query: 62 KYNDPDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVALVKLIKKHGM 121
K+ AFF+ HMMV PE+W+E A G + +TFH E +D V + + +++ GM
Sbjct: 60 -------KIKTAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGM 112
Query: 122 KAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLNIQ 181
K ++KPGT V L + D+ LVMTVEPGFGGQ FMADMM KVK LR +PNL+I+
Sbjct: 113 KVGLAIKPGTEVQDLEKYLSIADVVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIE 172
Query: 182 VDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDAL 229
VDGG+G + + AEAGAN+IV+GT+V A D + VI ++ V+ L
Sbjct: 173 VDGGVGPKTIHCCAEAGANMIVSGTAVVGASDQSQVIKELRDVVHSYL 220
>At5g61410 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 281
Score = 160 bits (404), Expect = 2e-39
Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 17/232 (7%)
Query: 5 IIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVIGKYN 64
I++PSIL+++F KLG + V +G DW+H+D+MDG FVPN+++G VV++LR
Sbjct: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR------- 111
Query: 65 DPDTKLPRAFFDCHMMVSEPERWVEDFARIGCDQFTFHYE--ATKDPVALVKLIKKHGMK 122
P T LP D H+M+ EPE+ V DF + G D + H E +T V IK G K
Sbjct: 112 -PVTDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAK 167
Query: 123 AACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLR----TRFPNL 178
A + PGTP+ + + +D+ L+M+V PGFGGQ F+ + K+ DLR + N
Sbjct: 168 AGVVLNPGTPLSAIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNP 227
Query: 179 NIQVDGGLGKQNVELAAEAGANVIVAGTSVFRAHDPADVIGFMKTKVNDALV 230
I+VDGG+ N EAGAN +VAG++VF A D A+ I +K A V
Sbjct: 228 WIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAV 279
>ECU06g1040 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 217
Score = 83.2 bits (204), Expect = 3e-16
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 21/214 (9%)
Query: 1 MVRAIIAPSILASDFTKLGCECHNVINSGADWLHIDIMDGHFVPNMSLGQPVVESLRKVI 60
M++ I SIL +F L E + +G +H+D+MD FV N++ G ++ +
Sbjct: 5 MLKKRIGISILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRI---- 60
Query: 61 GKYNDPDTKLPRAF-FDCHMMVSEPERWVEDFARIGCDQFTFHYEATKDPVALVKLIKKH 119
L F FD HMMV P + T H E D + + ++K
Sbjct: 61 ---------LEHDFVFDVHMMVESPLDIIMQIDLERVSLVTIHSEVC-DKAGVAEYLRKR 110
Query: 120 GMKAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRFPNLN 179
+ ++ P T VD S D L+M+V+PGFGGQKF + ++KV+++R R+ +
Sbjct: 111 NVLFGIALNPETQVDDAE--MRSADFVLIMSVKPGFGGQKFQEECLAKVEEVR-RYGKM- 166
Query: 180 IQVDGGLGKQNVELAAEAGANVIVAGTSVFRAHD 213
+ +DGG+ N+ GA+ V G+ FR+ D
Sbjct: 167 VGIDGGIEMSNI--GRITGADYAVVGSGYFRSGD 198
>Hs20476519 [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
Length = 118
Score = 63.2 bits (152), Expect = 3e-10
Identities = 34/67 (50%), Positives = 45/67 (66%)
Query: 116 IKKHGMKAACSVKPGTPVDVLYELAPSLDMALVMTVEPGFGGQKFMADMMSKVKDLRTRF 175
I ++GM ++K GT V+ L +DMALVMTVEPGF QKFM DMM KV L+T+
Sbjct: 49 IWENGMNVGLAIKLGTTVEYLALCTNKIDMALVMTVEPGFEEQKFMKDMMPKVHWLQTQL 108
Query: 176 PNLNIQV 182
+L+I+V
Sbjct: 109 LSLDIEV 115
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,205,294
Number of Sequences: 60738
Number of extensions: 595748
Number of successful extensions: 1185
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 12
length of query: 237
length of database: 30,389,216
effective HSP length: 103
effective length of query: 134
effective length of database: 24,133,202
effective search space: 3233849068
effective search space used: 3233849068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)