ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV3902 good A KOG1782 RNA processing and modification Small Nuclear ribonucleoprotein splicing factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV3902 1349357 1349893 179
(179 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL124c [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor 231 5e-61
SPBC3D6.08c [A] KOG1782 Small Nuclear ribonucleoprotein splicing... 132 3e-31
Hs7657313 [A] KOG1782 Small Nuclear ribonucleoprotein splicing f... 104 7e-23
7291257 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor 102 2e-22
At1g19120 [A] KOG1782 Small Nuclear ribonucleoprotein splicing f... 84 1e-16
At3g14080 [A] KOG1782 Small Nuclear ribonucleoprotein splicing f... 74 1e-13
CE05848 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor 69 3e-12
ECU05g1310 [A] KOG1782 Small Nuclear ribonucleoprotein splicing ... 60 2e-09
Hs7706425 [A] KOG1784 Small Nuclear ribonucleoprotein splicing f... 60 2e-09
CE29146 [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor 57 1e-08
At1g65700 [A] KOG1784 Small Nuclear ribonucleoprotein splicing f... 54 2e-07
SPCC1840.10 [A] KOG1784 Small Nuclear ribonucleoprotein splicing... 50 2e-06
>YJL124c [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 172
Score = 231 bits (588), Expect = 5e-61
Identities = 116/155 (74%), Positives = 132/155 (84%), Gaps = 1/155 (0%)
Query: 25 EENRPKSKLSEGEADLYLDQYNFTTTAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANL 84
++N PK K+SEGEADLYLDQYNFTTTAAIV SVDRKIFVLLRDGRM FGVLRTFDQYANL
Sbjct: 19 QQNFPK-KISEGEADLYLDQYNFTTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANL 77
Query: 85 ILQHTVERIYIEGENKYGECDRGVFMIRGENVVMLGEVDIDKEDAPLESMERVPFEEAES 144
ILQ VERIY ENKY E DRG+FMIRGENVVMLGEVDIDKED PLE+MER+PF+EA
Sbjct: 78 ILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGEVDIDKEDQPLEAMERIPFKEAWL 137
Query: 145 YKEKMDEVKYKENTAKGKRLAQLGLTTDFNKGDLY 179
K+K DE ++KE T KGK++A+ G+ DF+K D+Y
Sbjct: 138 TKQKNDEKRFKEETHKGKKMARHGIVYDFHKSDMY 172
>SPBC3D6.08c [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 140
Score = 132 bits (331), Expect = 3e-31
Identities = 64/133 (48%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 47 FTTTAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDR 106
FTT+ ++V VDRK+ V+LRDG+ G+LR+FDQ+ANL+LQ+T+ERIY++ + YG+ DR
Sbjct: 10 FTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVD--DMYGDIDR 67
Query: 107 GVFMIRGENVVMLGEVDIDKEDAPLESMERVPFEEAESYKEKMDEVKYKENTAKGKRLAQ 166
GV+++RGENVV+LGE+D+DKE ++ + R+P EE + +E K K KGK L
Sbjct: 68 GVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIREKGKYLHS 127
Query: 167 LGLTTDFNKGDLY 179
+G + D DLY
Sbjct: 128 VGFSVDGGHDDLY 140
>Hs7657313 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 133
Score = 104 bits (259), Expect = 7e-23
Identities = 54/119 (45%), Positives = 81/119 (67%), Gaps = 5/119 (4%)
Query: 50 TAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVF 109
TA+++ +D+K VLLRDGR G LR+ DQ+ANL+L TVERI++ KYG+ RG+F
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHV--GKKYGDIPRGIF 64
Query: 110 MIRGENVVMLGEVDIDKE-DAPLE--SMERVPFEEAESYKEKMDEVKYKENTAKGKRLA 165
++RGENVV+LGE+D++KE D PL+ S+E + E+ + K++ K K K + L+
Sbjct: 65 VVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLS 123
>7291257 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 137
Score = 102 bits (255), Expect = 2e-22
Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 50 TAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVF 109
TA ++ VD+K+ VLLRDGR G LR+ DQ+ANL+LQ T+ERI++ N+YG+ RGVF
Sbjct: 10 TAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHV--GNEYGDIPRGVF 67
Query: 110 MIRGENVVMLGEVDIDKEDAPLESMERVPFEEAESYKEKMDEVKYKENTAKGKRLAQLGL 169
+IRGENVV+LGE+D +KE ++ + +E + + E + +++ K L + GL
Sbjct: 68 IIRGENVVLLGEIDREKEQK--LPLKEISVDEILDAQRREQEQRQEKHRLVSKALKERGL 125
Query: 170 TTDFN 174
D N
Sbjct: 126 AVDAN 130
>At1g19120 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 128
Score = 84.0 bits (206), Expect = 1e-16
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 43 DQYNFTTTAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYG 102
D F+T+ A +D+K+ VLLRDGR G+LR+FDQ+AN +L+ ER+ + + Y
Sbjct: 7 DDIFFSTSLAAY--LDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIV--GDLYC 62
Query: 103 ECDRGVFMIRGENVVMLGEVDIDKEDAPLESMERVPFEEAESYKEKMDEVKYKENTAK 160
+ G+++IRGENVV++GE+D++KE+ P ++ E + K + +E+ K K
Sbjct: 63 DIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120
>At3g14080 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 118
Score = 73.6 bits (179), Expect = 1e-13
Identities = 36/71 (50%), Positives = 53/71 (73%), Gaps = 2/71 (2%)
Query: 60 KIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVFMIRGENVVML 119
K+ VLLRDGR G LR+FDQ+AN +L+ ER+ I GE +Y + G+++IRGENVV++
Sbjct: 12 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERV-IVGE-QYCDIPLGLYVIRGENVVLI 69
Query: 120 GEVDIDKEDAP 130
GE+D ++E+ P
Sbjct: 70 GELDTEREELP 80
>CE05848 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 125
Score = 68.9 bits (167), Expect = 3e-12
Identities = 33/67 (49%), Positives = 47/67 (69%), Gaps = 2/67 (2%)
Query: 57 VDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVFMIRGENV 116
+D+K+ V+LRDGR G LR+ DQ+ANLIL+ VER ++ E + E +G +IRGENV
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFV--EKYFCETGQGFMLIRGENV 75
Query: 117 VMLGEVD 123
+ GE+D
Sbjct: 76 ELAGEID 82
>ECU05g1310 [A] KOG1782 Small Nuclear ribonucleoprotein splicing factor
Length = 102
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 57 VDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVFMIRGENV 116
+++++ V+LRDGR +GV+++FDQ+ ++ L +ERI+ + +Y E +F+IRGEN+
Sbjct: 16 LEQEVVVMLRDGRYLYGVMKSFDQFNSVTLDGVIERIF--HDTRYAERRHELFIIRGENI 73
Query: 117 VMLGEVDIDKEDAPLESMERVPF 139
M+G D E E +E+ F
Sbjct: 74 TMIGLSPPDVE----EGLEQADF 92
>Hs7706425 [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor
Length = 96
Score = 59.7 bits (143), Expect = 2e-09
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 50 TAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVF 109
T+A+ ++R + V+ DGRM G L+ FDQ NLIL + ER++ + + G++
Sbjct: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQG-VEQVVLGLY 60
Query: 110 MIRGENVVMLGEVDIDKEDA 129
++RG+NV ++GE+D + + A
Sbjct: 61 IVRGDNVAVIGEIDEETDSA 80
>CE29146 [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor
Length = 98
Score = 57.4 bits (137), Expect = 1e-08
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 50 TAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVF 109
T+ + ++R + V+ DGR+ G+L+ FDQ NL+++ ER Y E E G++
Sbjct: 2 TSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVL-TTPLGLY 60
Query: 110 MIRGENVVMLGEVD--IDKEDAPLESMERVP 138
+IRGENV ++GE+D +DK LE+++ P
Sbjct: 61 IIRGENVAIIGEIDEELDKR-VDLENVKAAP 90
>At1g65700 [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor
Length = 98
Score = 53.5 bits (127), Expect = 2e-07
Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 2/83 (2%)
Query: 50 TAAIVGSVDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVF 109
T + VD+ I V+ DGR GVL+ FDQ N+IL + ER++ E G++
Sbjct: 4 TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHV-LGLY 62
Query: 110 MIRGENVVMLGEVDIDKEDAPLE 132
+IRG+N+ ++GE+D ++ DA L+
Sbjct: 63 IIRGDNIGVIGELD-EELDASLD 84
>SPCC1840.10 [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor
Length = 94
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 3/73 (4%)
Query: 57 VDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVFMIRGENV 116
+++++ V+ DGR+ G L+ FD NLIL + ERI I + GV+++RGENV
Sbjct: 7 MEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERI-ISMDQDMETIPLGVYLLRGENV 65
Query: 117 VMLGEV--DIDKE 127
M+G V ++D E
Sbjct: 66 AMVGLVNEELDSE 78
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.137 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,666,268
Number of Sequences: 60738
Number of extensions: 396813
Number of successful extensions: 1320
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 30,389,216
effective HSP length: 99
effective length of query: 80
effective length of database: 24,376,154
effective search space: 1950092320
effective search space used: 1950092320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)