ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV3930    suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV3930 1357782  1359467 562  
         (562 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs8923124 [R] KOG0017 FOG: Transposon-encoded proteins with TYA ...    50   7e-06

>Hs8923124 [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 392

 Score = 50.4 bits (119), Expect = 7e-06
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 272 ERLIYYLEHGEYPPSCNRNEKARLRVIAKKHSLINGKLHFKGKE------VVYDPQRQLR 325
           +++ YY   GEY  +   +E++ +R  AKK      KL + GK+      V+   + + +
Sbjct: 13  KQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKK 72

Query: 326 IAYETHMVD---HQGINRVTSKLAEKYHWKGIKQTVIQVINSCSNCQENTN 373
           +  E H  D   H GI+R  + +   Y+W  +     Q + +C +CQ   N
Sbjct: 73  VLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDAKQWVYACQHCQVAKN 123


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,147,003
Number of Sequences: 60738
Number of extensions: 1616773
Number of successful extensions: 3871
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3870
Number of HSP's gapped (non-prelim): 1
length of query: 562
length of database: 30,389,216
effective HSP length: 112
effective length of query: 450
effective length of database: 23,586,560
effective search space: 10613952000
effective search space used: 10613952000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)