ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4132 good A KOG4655 RNA processing and modification U3 small nucleolar ribonucleoprotein (snoRNP) component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4132 1426024 1425476 -183
(183 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR148w [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP... 330 7e-91
SPAC19D5.05c [A] KOG4655 U3 small nucleolar ribonucleoprotein (s... 255 2e-68
Hs8922794 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoR... 197 9e-51
At5g15750 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoR... 192 3e-49
7302772 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP... 184 6e-47
CE08804 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP... 171 4e-43
ECU05g1320 [A] KOG4655 U3 small nucleolar ribonucleoprotein (sno... 166 2e-41
YPL081w [J] KOG3301 Ribosomal protein S4 56 2e-08
CE05849 [J] KOG3301 Ribosomal protein S4 56 2e-08
YBR189w [J] KOG3301 Ribosomal protein S4 56 3e-08
At5g15200 [J] KOG3301 Ribosomal protein S4 55 5e-08
SPAC24H6.07 [J] KOG3301 Ribosomal protein S4 55 7e-08
SPBC29A3.12 [J] KOG3301 Ribosomal protein S4 54 9e-08
At5g39850 [J] KOG3301 Ribosomal protein S4 54 1e-07
Hs14141193 [J] KOG3301 Ribosomal protein S4 52 6e-07
7294919 [J] KOG3301 Ribosomal protein S4 49 4e-06
>YHR148w [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 330 bits (846), Expect = 7e-91
Identities = 157/181 (86%), Positives = 170/181 (93%)
Query: 1 MVRALKHHEQKLLKKVDFYEWKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHK 60
MVR LKHHEQKLLKKVDF EWKQDQ HRDTQVMRTYHIQNREDYHKYNRICGD+RRLA+K
Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60
Query: 61 LSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLKM 120
LSLL PTDPFR KHEQLLL+KLY MG+L+TKSKIS LENKVTVSA CRRRLPVIMHRLKM
Sbjct: 61 LSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKM 120
Query: 121 AQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKTVLRYRNAVDDF 180
A+T++DAV+FIEQGHVRVGPNLI DPAYLVTRN+EDYVTW D+SKIKKT+LRYRN +DDF
Sbjct: 121 AETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDF 180
Query: 181 D 181
D
Sbjct: 181 D 181
>SPAC19D5.05c [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 255 bits (652), Expect = 2e-68
Identities = 120/181 (66%), Positives = 150/181 (82%), Gaps = 1/181 (0%)
Query: 2 VRALKHHEQKLLKKVDFYEWKQDQN-HRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHK 60
+R LKHHEQKLL+KVDF +K D N HRD VMR YHI RE+Y KYN ICG R+LAH+
Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60
Query: 61 LSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLKM 120
LSLL PTDPFR+++E LLLEKL+ MGIL +KSK+S +ENK VSA CRRRLPVIM +L+M
Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120
Query: 121 AQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKTVLRYRNAVDDF 180
+Q + +A + IEQGHVRVGP++ITDPAYLVTR+LED+VTWTD+SKIK+T+ +Y + +DD+
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180
Query: 181 D 181
D
Sbjct: 181 D 181
>Hs8922794 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 184
Score = 197 bits (500), Expect = 9e-51
Identities = 98/182 (53%), Positives = 132/182 (71%), Gaps = 2/182 (1%)
Query: 1 MVRALKHHEQKLLKKVDFYEWK-QDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAH 59
MVR LK HEQKLLK+VDF W+ D N + +V+R Y +Q REDY +YN++ VR LA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 60 KLSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLK 119
+L L D FR++ LL+KLY +G++ T+ + L + VT S+FCRRRLP ++ +L+
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLE-LCDFVTASSFCRRRLPTVLLKLR 119
Query: 120 MAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKTVLRYRNAVDD 179
MAQ L+ AV F+EQGHVRVGP+++TDPA+LVTR++ED+VTW DSSKIK+ VL Y DD
Sbjct: 120 MAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDD 179
Query: 180 FD 181
FD
Sbjct: 180 FD 181
>At5g15750 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 194
Score = 192 bits (487), Expect = 3e-49
Identities = 91/192 (47%), Positives = 135/192 (69%), Gaps = 13/192 (6%)
Query: 2 VRALKHHEQKLLKKVDFYEWKQDQNHRDTQVMRTYHIQNREDYHKYNRICG--------- 52
+R LK+HE+KL+KKV+F EWK++ NHR+ ++ YH+ +R+DY K +
Sbjct: 1 MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKLVPLFALKALFYLFF 60
Query: 53 ---DVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRR 109
V++L + + + P DPFRI+ +LLEKLY+MG++ T+ ++ E +++VS+FCRR
Sbjct: 61 FFWMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTE-RLSVSSFCRR 119
Query: 110 RLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKT 169
RL ++ LK A+ K+AV +IEQGHVRVGP ITDPA+LVTRN+ED++TW DSSKIK+
Sbjct: 120 RLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRK 179
Query: 170 VLRYRNAVDDFD 181
VL Y + +DD+D
Sbjct: 180 VLEYNDTLDDYD 191
>7302772 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 200
Score = 184 bits (467), Expect = 6e-47
Identities = 93/199 (46%), Positives = 129/199 (64%), Gaps = 20/199 (10%)
Query: 1 MVRALKHHEQKLLKKVDFYEWKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHK 60
MVR LK HEQKLLKKVDF WK D ++ +++R +HIQ REDY KYN++ ++R LA +
Sbjct: 1 MVRKLKFHEQKLLKKVDFITWKVDNGGKENKILRRFHIQKREDYTKYNKLSREIRELAER 60
Query: 61 LSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHR--- 117
++ L ++PF+ + +LL KL+ MG+ + + + K++ S FCRRRLPVIM +
Sbjct: 61 IAKLDASEPFKTEATTMLLNKLHAMGVSNDQLTLETAA-KISASHFCRRRLPVIMVKREY 119
Query: 118 ----------------LKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWT 161
++M++ LK A IE GHVRVGP +I DPA+LV+RNLED+VTW
Sbjct: 120 HPLISTSFSYNHFPLAVRMSEHLKAATDLIEHGHVRVGPEMIKDPAFLVSRNLEDFVTWV 179
Query: 162 DSSKIKKTVLRYRNAVDDF 180
D SKIK+ VLRY + DDF
Sbjct: 180 DGSKIKEHVLRYNDMRDDF 198
>CE08804 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 171 bits (434), Expect = 4e-43
Identities = 83/181 (45%), Positives = 117/181 (63%), Gaps = 1/181 (0%)
Query: 1 MVRALKHHEQKLLKKVDFYEWKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHK 60
MVR LK HEQKLLKK DF W+ DQ + ++R ++++ RE Y YN + R +A
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60
Query: 61 LSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLKM 120
+ L +DPFR K + +L K Y G++ T + + KVT ++F RRRLPV+M + M
Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERI-GKVTGASFARRRLPVVMRNIGM 119
Query: 121 AQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKTVLRYRNAVDDF 180
+++K A +EQGHVR+G L+TDPA++VTR+ ED +TWT +SKIKK V+ Y N DDF
Sbjct: 120 CESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDF 179
Query: 181 D 181
D
Sbjct: 180 D 180
>ECU05g1320 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 180
Score = 166 bits (419), Expect = 2e-41
Identities = 75/180 (41%), Positives = 122/180 (67%), Gaps = 2/180 (1%)
Query: 2 VRALKHHEQKLLKKVDFYEWKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKL 61
+R LK HE+KLLK+V+F EWK R+ + Y +++RE+Y KY+RI G VR+LA L
Sbjct: 1 MRELKFHEKKLLKQVNFLEWKNTNTAREHLAIAKYGLRDREEYTKYSRIVGKVRKLAEAL 60
Query: 62 SLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLKMA 121
+ L+ +DP R + L+ +LY +G++ + + KVTVS+FC RRLP++M R++M
Sbjct: 61 ARLKESDPVRTTITKKLVGRLYSVGVIKNRKLVDC--TKVTVSSFCERRLPMVMKRIRMV 118
Query: 122 QTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLEDYVTWTDSSKIKKTVLRYRNAVDDFD 181
+ KDA +F+E GHVR+G ++ DP+ ++++ +ED+V+W D SKIK+ + + +DDF+
Sbjct: 119 PSFKDATRFVEHGHVRLGSKVVYDPSTIISKAMEDFVSWVDKSKIKRKIDEFNGELDDFN 178
>YPL081w [J] KOG3301 Ribosomal protein S4
Length = 197
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/129 (24%), Positives = 65/129 (50%)
Query: 36 YHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKIS 95
+ ++N+++ ++ + +RR A L DP R+ L+ +L +G+LS K
Sbjct: 34 FGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKL 93
Query: 96 ALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLE 155
+ V F RRL +++L +A+++ A I Q H+ VG ++ P+++V + E
Sbjct: 94 DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSE 153
Query: 156 DYVTWTDSS 164
++ + +S
Sbjct: 154 KHIDFAPTS 162
>CE05849 [J] KOG3301 Ribosomal protein S4
Length = 189
Score = 56.2 bits (134), Expect = 2e-08
Identities = 37/161 (22%), Positives = 85/161 (51%), Gaps = 10/161 (6%)
Query: 21 WKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLE 80
+++++ ++ +++ T+ ++N+ + + VR+ A +L L+ DP R+ LL
Sbjct: 19 FEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLR 78
Query: 81 KLYHMGIL-STKSKISALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVG 139
+L +G+L TK K+ + + V F RRL + +L +A+++ A I+Q H+RV
Sbjct: 79 RLVKIGVLDETKMKLDYVLG-LKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVR 137
Query: 140 PNLITDPAYLVTRNLEDYVTWTDSS--------KIKKTVLR 172
++ P+++V + + ++ ++ S ++K+ LR
Sbjct: 138 RQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLR 178
>YBR189w [J] KOG3301 Ribosomal protein S4
Length = 195
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/129 (24%), Positives = 64/129 (49%)
Query: 36 YHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKIS 95
+ ++N+ + ++ + +RR A L DP R+ L+ +L +G+LS K
Sbjct: 34 FGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKL 93
Query: 96 ALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLE 155
+ V F RRL +++L +A+++ A I Q H+ VG ++ P+++V + E
Sbjct: 94 DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSE 153
Query: 156 DYVTWTDSS 164
++ + +S
Sbjct: 154 KHIDFAPTS 162
>At5g15200 [J] KOG3301 Ribosomal protein S4
Length = 198
Score = 55.1 bits (131), Expect = 5e-08
Identities = 32/144 (22%), Positives = 69/144 (47%)
Query: 21 WKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLE 80
+++++ + +++ Y ++N+ + + +R A L L P RI + LL
Sbjct: 21 YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80
Query: 81 KLYHMGILSTKSKISALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGP 140
++ G+L +TV F RRL I+ + MA+++ + I Q H+RVG
Sbjct: 81 RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140
Query: 141 NLITDPAYLVTRNLEDYVTWTDSS 164
L+ P+++V + + ++ + +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164
>SPAC24H6.07 [J] KOG3301 Ribosomal protein S4
Length = 191
Score = 54.7 bits (130), Expect = 7e-08
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 36 YHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGILS-TKSKI 94
Y ++N+ + + +RR A +L L DP R+ ++ +L +GIL T+ K+
Sbjct: 34 YGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKL 93
Query: 95 SALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNL 154
+ + + F RRL + +L +A+++ A I Q H+RVG ++ P+++V +
Sbjct: 94 DYVL-ALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDT 152
Query: 155 EDYVTWTDSS 164
+ ++ + SS
Sbjct: 153 QKHIDFALSS 162
>SPBC29A3.12 [J] KOG3301 Ribosomal protein S4
Length = 192
Score = 54.3 bits (129), Expect = 9e-08
Identities = 31/129 (24%), Positives = 62/129 (48%)
Query: 36 YHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGILSTKSKIS 95
Y ++N+ + + +RR A +L L DP R+ ++ +L +GIL
Sbjct: 34 YGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKL 93
Query: 96 ALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPAYLVTRNLE 155
+ + F RRL + +L +A+++ A I Q H+RVG ++ P+++V + +
Sbjct: 94 DYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQ 153
Query: 156 DYVTWTDSS 164
++ + SS
Sbjct: 154 KHIDFALSS 162
>At5g39850 [J] KOG3301 Ribosomal protein S4
Length = 197
Score = 53.9 bits (128), Expect = 1e-07
Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 21 WKQDQNHRDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLE 80
+++++ + +++ Y ++ + + + +R A +L L +P RI + LL
Sbjct: 21 YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80
Query: 81 KLYHMGILS-TKSKISALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVG 139
++ G+L T++K+ + +TV F RRL I+ + MA+++ A I Q H+RVG
Sbjct: 81 RMNRYGLLDETQNKLDYVL-ALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVG 139
Query: 140 PNLITDPAYLVTRNLEDYVTWTDSS 164
L+ P+++V + +V ++ +S
Sbjct: 140 RQLVNIPSFMVRVESQKHVDFSLTS 164
>Hs14141193 [J] KOG3301 Ribosomal protein S4
Length = 194
Score = 51.6 bits (122), Expect = 6e-07
Identities = 30/135 (22%), Positives = 69/135 (50%), Gaps = 2/135 (1%)
Query: 28 RDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGI 87
++ +++ Y ++N+ + + +R+ A +L L DP R+ LL +L +G+
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 86
Query: 88 LST-KSKISALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDP 146
L K K+ + + + F RRL + +L +A+++ A I Q H+RV ++ P
Sbjct: 87 LDEGKMKLDYILG-LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145
Query: 147 AYLVTRNLEDYVTWT 161
+++V + + ++ ++
Sbjct: 146 SFIVRLDSQKHIDFS 160
>7294919 [J] KOG3301 Ribosomal protein S4
Length = 195
Score = 48.9 bits (115), Expect = 4e-06
Identities = 27/134 (20%), Positives = 64/134 (47%)
Query: 28 RDTQVMRTYHIQNREDYHKYNRICGDVRRLAHKLSLLQPTDPFRIKHEQLLLEKLYHMGI 87
++ +++ Y ++N+ + + +R+ A +L L D R+ LL +L +G+
Sbjct: 28 QELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGV 87
Query: 88 LSTKSKISALENKVTVSAFCRRRLPVIMHRLKMAQTLKDAVQFIEQGHVRVGPNLITDPA 147
L + + F RRL + +L +A+++ A I Q H+RV ++ P+
Sbjct: 88 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS 147
Query: 148 YLVTRNLEDYVTWT 161
++V + + ++ ++
Sbjct: 148 FVVRLDSQKHIDFS 161
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,726,416
Number of Sequences: 60738
Number of extensions: 409611
Number of successful extensions: 1115
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 30,389,216
effective HSP length: 100
effective length of query: 83
effective length of database: 24,315,416
effective search space: 2018179528
effective search space used: 2018179528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)