ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4138 good J KOG3254 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L6
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4138 1426553 1427194 214
(214 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR147c [J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6 301 3e-82
SPAC12G12.08 [J] KOG3254 Mitochondrial/chloroplast ribosomal pro... 122 5e-28
At1g05190 [J] KOG3254 Mitochondrial/chloroplast ribosomal protei... 92 4e-19
At2g18400 [J] KOG3254 Mitochondrial/chloroplast ribosomal protei... 70 2e-12
>YHR147c [J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6
Length = 214
Score = 301 bits (772), Expect = 3e-82
Identities = 140/214 (65%), Positives = 177/214 (82%)
Query: 1 MTFVSRRLFSVSALLRSHIGSSPVYLTPETKLVVESMKLPKIIRKGNKSLKLSQNVTVSG 60
M+F+ RRL S + LRS +GS P+Y++PE ++ + ++ +P+IIRKG S+ +SQN+TV G
Sbjct: 1 MSFIQRRLLSQTLFLRSQVGSLPLYISPEVQVSINALSMPRIIRKGRTSMNISQNITVKG 60
Query: 61 PLGKIDMEIPDFVEIKQDGSSGKIEVAVKDSTDKTQRSMWGTVRSHINNHITGVNESHMA 120
P G++ +E+PDF+ + +D GKI V V++S DK QRSMWGTVRS INNHI GV E H+A
Sbjct: 61 PKGELSVEVPDFLHLDKDEKHGKINVTVQNSEDKHQRSMWGTVRSLINNHIIGVTEGHLA 120
Query: 121 VLKFVGTGYRAQLEENNTFVNVKVGASVRQGLPIPEGIIVKSPVPTSLIVEGVNKQQVLL 180
VL+FVGTGYRAQLE + FVNVKVGAS++QGL +PEGI+VK+P PTSLI+EG NKQQVLL
Sbjct: 121 VLRFVGTGYRAQLENDGKFVNVKVGASIKQGLDVPEGIVVKTPAPTSLIIEGCNKQQVLL 180
Query: 181 FAANLRKFHPPEPYKGKGIYVNNETIKIKDKKIK 214
FAA LRKFHPPEPYKGKGIYVN+ETIK+KDKKIK
Sbjct: 181 FAAKLRKFHPPEPYKGKGIYVNDETIKLKDKKIK 214
>SPAC12G12.08 [J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6
Length = 213
Score = 122 bits (305), Expect = 5e-28
Identities = 67/217 (30%), Positives = 119/217 (53%), Gaps = 24/217 (11%)
Query: 1 MTFVSRRL---FSVSALLRSHIGSSPVYLTPETKLVVESMKLPKIIRKGNKSLKLSQNVT 57
+TF RL F+ + RS++G + + + +E +L
Sbjct: 13 LTFRIARLGMNFTTCSAARSYVGKKEIIVPKNIQFDLEGEQLQ----------------- 55
Query: 58 VSGPLGKIDMEIPDFVEIKQDGSSGKI--EVAVKDSTDKTQRSMWGTVRSHINNHITGVN 115
++GP G ++M P+++ + + K+ + ++ K QR+MWGT R+ + N++ GV
Sbjct: 56 ITGPHGTLNMRFPNYLNLSKTNDILKVGMDANIEKQATKKQRAMWGTTRAILANNVKGVT 115
Query: 116 ESHMAVLKFVGTGYRAQLEENNTFVNVKVGASVRQGLPIPEGIIVKSPVPTSLIVEGVNK 175
+++K VG GYR L + N +++K+G + + IP + V++P PTSL++ G+++
Sbjct: 116 MYWQSIIKLVGIGYRTSLNDGN--IHLKIGYANDILVSIPTDVQVENPTPTSLVLRGIDR 173
Query: 176 QQVLLFAANLRKFHPPEPYKGKGIYVNNETIKIKDKK 212
Q+V FAA +R F PEPYKGKGIYV+ E ++K K+
Sbjct: 174 QKVTQFAAKIRSFKKPEPYKGKGIYVDGEKPQLKAKR 210
>At1g05190 [J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6
Length = 223
Score = 92.4 bits (228), Expect = 4e-19
Identities = 64/209 (30%), Positives = 112/209 (52%), Gaps = 11/209 (5%)
Query: 6 RRLFSVSALLRSHIG-SSPVYLTPETKLVVESMKLPKIIRKGNKSLKLS-QNVTVSGPLG 63
R +F VS+ + +G SS E+++ + + +P N ++ L Q++ V GPLG
Sbjct: 19 RNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPS-----NVTIALEGQDLKVKGPLG 73
Query: 64 KIDMEIPDFVEIKQDGSSGKIEVAVKDSTDKTQRSMWGTVRSHINNHITGVNESHMAVLK 123
++ + P VE+ ++ SG + V T + + M G R+ +N + GV++ L
Sbjct: 74 ELALTYPREVELTKE-ESGFLRVKKTVETRRANQ-MHGLFRTLTDNMVVGVSKGFEKKLI 131
Query: 124 FVGTGYRAQLEENNTFVNVKVGASVRQGLPIPEGIIVKSPVPTSLIVEGVNKQQVLLFAA 183
VG GYRA ++ +N+ V+ + IP+ + VK T + V G +K ++ FAA
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVK--MQIPDSLKVKVEENTRITVSGYDKSEIGQFAA 189
Query: 184 NLRKFHPPEPYKGKGIYVNNETIKIKDKK 212
+RK+ PPEPYKGKG+ ++E ++ K+ K
Sbjct: 190 TVRKWRPPEPYKGKGVKYSDEIVRRKEGK 218
>At2g18400 [J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6
Length = 144
Score = 70.5 bits (171), Expect = 2e-12
Identities = 38/91 (41%), Positives = 52/91 (56%)
Query: 122 LKFVGTGYRAQLEENNTFVNVKVGASVRQGLPIPEGIIVKSPVPTSLIVEGVNKQQVLLF 181
LK VG GY+A+ EE F+ +K+G S L +P + V + G++KQ+V F
Sbjct: 51 LKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQRVHQF 110
Query: 182 AANLRKFHPPEPYKGKGIYVNNETIKIKDKK 212
AA +R PPEPYKGKGI +E +K K K
Sbjct: 111 AATVRSCKPPEPYKGKGIMYTDEVVKKKQGK 141
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,665,477
Number of Sequences: 60738
Number of extensions: 535852
Number of successful extensions: 913
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 4
length of query: 214
length of database: 30,389,216
effective HSP length: 102
effective length of query: 112
effective length of database: 24,193,940
effective search space: 2709721280
effective search space used: 2709721280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)