ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4141 good J KOG3141 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4141 1427540 1428358 273
(273 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR220c [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3 313 1e-85
SPAC644.17c [J] KOG3141 Mitochondrial/chloroplast ribosomal prot... 191 7e-49
At3g17465 [J] KOG3141 Mitochondrial/chloroplast ribosomal protei... 146 4e-35
7293124 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3 116 3e-26
At2g43030 [J] KOG3141 Mitochondrial/chloroplast ribosomal protei... 107 2e-23
Hs6005862 [J] KOG3141 Mitochondrial/chloroplast ribosomal protei... 105 5e-23
CE26871 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3 99 8e-21
>YGR220c [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 269
Score = 313 bits (803), Expect = 1e-85
Identities = 154/243 (63%), Positives = 187/243 (76%)
Query: 27 LVAPSVASSIHLDPVDIKHSPENALKRRRLPLRCGALSKKVGMMPYFEKETGKRIAATVL 86
LVAPS+A+SI + I HSPE A R+ LP RCG +++K GMMPYF+K TG+R AAT+L
Sbjct: 26 LVAPSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATIL 85
Query: 87 QLDNNEVILHRTPAENNYWACQIGYGNKSPENVTRQMLGHFAAHVVNPKEKVTEFRVKDE 146
+++N EVI+HRT N Y+ACQ+GYG++ V+RQMLGHFA+ VVNPKE V EFRVKDE
Sbjct: 86 EVNNVEVIMHRTSEVNGYFACQVGYGSRHLSKVSRQMLGHFASKVVNPKEHVAEFRVKDE 145
Query: 147 SGLLPVGSLIKPSWFKPGQYVDLRSISKGKGFQGVMKRYGFKGLKAXXXXXXXXXXXXXX 206
GL+P G+L+KPS+FK GQYVD+RS+SKGKGF GVMKRYGFKGL+A
Sbjct: 146 KGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHGTSIMHRHGGSY 205
Query: 207 XQNQTPGRVLPGKKMPGHMGVDTVTIQNVQVLDVNDETGTVLVKGSVAGPNGAFVKIQDA 266
QNQ PGRVLPG+KMPGHMG + VTIQNV+VL V+DE + VKGSVAGP +FVKIQDA
Sbjct: 206 GQNQDPGRVLPGRKMPGHMGNEHVTIQNVKVLKVDDENNVIWVKGSVAGPKNSFVKIQDA 265
Query: 267 IKK 269
IKK
Sbjct: 266 IKK 268
>SPAC644.17c [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 259
Score = 191 bits (486), Expect = 7e-49
Identities = 102/250 (40%), Positives = 152/250 (60%), Gaps = 5/250 (2%)
Query: 27 LVAPSV----ASSIHLDPVDIKHS-PENALKRRRLPLRCGALSKKVGMMPYFEKETGKRI 81
L++P++ A +L P I H PE A R+++PLR G + K GM ++++TG ++
Sbjct: 6 LISPTLIRTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKTGMQV 65
Query: 82 AATVLQLDNNEVILHRTPAENNYWACQIGYGNKSPENVTRQMLGHFAAHVVNPKEKVTEF 141
T+LQ D + I RT ++ Y+A Q+G G + P+++T+ G+F +H + PK V EF
Sbjct: 66 PLTILQFDRVQAIDVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREF 125
Query: 142 RVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKGKGFQGVMKRYGFKGLKAXXXXXXXXX 201
RV+D SGL+ G++ +FKP QYVD++ I+KGKGF GVMKR+GF G A
Sbjct: 126 RVRDASGLVSPGTIFTTDYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHR 185
Query: 202 XXXXXXQNQTPGRVLPGKKMPGHMGVDTVTIQNVQVLDVNDETGTVLVKGSVAGPNGAFV 261
QN TP RVLPG+KM GHMG + T++N+ V V+ + +LVKGS+ GPN + V
Sbjct: 186 TPGSTGQNTTPSRVLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKGSIPGPNKSAV 245
Query: 262 KIQDAIKKPT 271
+ D I + T
Sbjct: 246 YVTDTINRST 255
>At3g17465 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 321
Score = 146 bits (368), Expect = 4e-35
Identities = 85/213 (39%), Positives = 123/213 (56%), Gaps = 6/213 (2%)
Query: 59 RCGALSKKVGMMPYFEKETGKRIAATVLQLDNNEVILHRTPAENNYWACQIGYGNKSPEN 118
R G ++ K GM ++K GKRI ++L +D+N V +T + +A QIG G K P++
Sbjct: 76 RTGIIAVKCGMTALWDK-WGKRIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKH 134
Query: 119 VTRQMLGHFAAHVVNPKEKVTEFRVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKGKGF 178
+++ ++GHF A V K K+ EF V +++ LLPVG+ + F PGQYVD+ I++GKGF
Sbjct: 135 LSKAVVGHFRAQGVPLKRKLREFPVTEDA-LLPVGTSLGVRHFVPGQYVDVTGITRGKGF 193
Query: 179 QGVMKRYGFKGLKAXXXXXXXXXXXXXXXQNQTPGRVLPGKKMPGHMGVDTVTIQNVQVL 238
QG MKR+GF G+ A Q PG+ G+KM G MG D T++NV V
Sbjct: 194 QGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGK---GRKMAGRMGADQRTVKNVWVY 250
Query: 239 DVNDETGTVLVKGSVAGPNGAFVKIQDA-IKKP 270
++ + V+G V G G FV I+DA KKP
Sbjct: 251 KIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKP 283
>7293124 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 309
Score = 116 bits (291), Expect = 3e-26
Identities = 78/224 (34%), Positives = 113/224 (49%), Gaps = 19/224 (8%)
Query: 59 RCGALSKKVGMMPYFEKETGKRIAATVLQLDNNEVILHRTPAENNYWACQI--------- 109
RCG +++K+G P + K G+RI T+LQ+ +N VI + P E Y Q+
Sbjct: 46 RCGVIARKIGQYPLWLKN-GERIRTTLLQIVDNHVIKYIPPEE--YLPAQVPTVANLHKR 102
Query: 110 -----GYGNKSPENVTRQMLGHFAAHVVNPKEKVTEFRVKDESGLLPVGSLIKPSWFKPG 164
G +P +T++ G F V PK+ + F V E+ L P G+ + + F+ G
Sbjct: 103 GCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARFIVSPEAQLAP-GTPLNVNHFRVG 161
Query: 165 QYVDLRSISKGKGFQGVMKRYGFKGLKAXXXXXXXXXXXXXXXQNQTPGRVLPGKKMPGH 224
+VD+R + GFQGV+KR+GFKG+ A GRV PG KMPGH
Sbjct: 162 DFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRRAGNIGGGGEKGRVWPGTKMPGH 221
Query: 225 MGVDTVTIQNVQVLDVNDETGTVLVKG-SVAGPNGAFVKIQDAI 267
MG I+ ++V +N + + V+G SVAGP G V I D I
Sbjct: 222 MGNRWRIIKGLRVWRINTKYNVMWVQGSSVAGPTGGLVYIYDTI 265
>At2g43030 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 271
Score = 107 bits (267), Expect = 2e-23
Identities = 67/207 (32%), Positives = 100/207 (47%), Gaps = 3/207 (1%)
Query: 61 GALSKKVGMMPYFEKETGKRIAATVLQLDNNEVILH-RTPAENNYWACQIGYGNKSPENV 119
G + K+GMM +FE E G + TV+ ++ +T A + Y A QIGY + +
Sbjct: 57 GVMGSKLGMMSFFE-EDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKL 115
Query: 120 TRQMLGHFAAHVVNPKEKVTEFRVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKGKGFQ 179
T+ GH P + EFR+ + G P L+ FK G VD+ + GKGFQ
Sbjct: 116 TKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQ 175
Query: 180 GVMKRYGFKGLKAXXXXXXXXXXXXXXXQNQTPGRVLPGKKMPGHMGVDTVTIQNVQVLD 239
G +KR+ FK + TPGRV GKKMPG MG I+ ++++
Sbjct: 176 GGIKRHHFKRGQMTHGSKSHRALGSIGA-GTTPGRVYKGKKMPGRMGGTRTKIRKLKIVK 234
Query: 240 VNDETGTVLVKGSVAGPNGAFVKIQDA 266
V+ E V++KG++ G G ++I A
Sbjct: 235 VDKELNVVMIKGALPGKPGNLLRITPA 261
>Hs6005862 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 348
Score = 105 bits (263), Expect = 5e-23
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 5/210 (2%)
Query: 59 RCGALSKKVGMMPYFEKETGKRIAATVLQLDNNEVILHRTPAENNYWACQIGYGNKSPEN 118
R G ++ K+GMMP + K+ G++ T+LQ+ + V+ + + N + G K+
Sbjct: 96 RVGLIALKLGMMPLWTKD-GQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSR 154
Query: 119 VTR--QMLGHFAAHVVNPKEKVTEFRVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKGK 176
+ +L + + PK+ V F + D + + P G+ + + F+PGQYVD+ + + GK
Sbjct: 155 FRKATSILEFYRELGLPPKQTVKIFNITDNAAIKP-GTPLYAAHFRPGQYVDVTAKTIGK 213
Query: 177 GFQGVMKRYGFKGLKAXXXXXXXXXXXXXXXQNQTPGRVLPGKKMPGHMGVDTVTIQNVQ 236
GFQGVMKR+GFKG A GRV PG KMPG MG T ++
Sbjct: 214 GFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPGTKMPGKMGNIYRTEYGLK 272
Query: 237 VLDVNDETGTVLVKGSVAGPNGAFVKIQDA 266
V +N + + V GSV G VK++D+
Sbjct: 273 VWRINTKHNIIYVNGSVPGHKNCLVKVKDS 302
>CE26871 [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3
Length = 381
Score = 98.6 bits (244), Expect = 8e-21
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 25/274 (9%)
Query: 17 SQSGVSNGAKLVAPSVAS--SIHLDPVDIKHSPENALKRRRLP---LRCGALSKKVGMMP 71
S G+S G K + +V ++ + ++S E + +P R G + +K+GM+P
Sbjct: 33 SSVGISQGTKNLLETVIEKETLAASTIAFQNSQETNVSVVDIPDSSRRVGLVVRKIGMLP 92
Query: 72 YFEKETGKRIAATVLQLDNNEVILHRTP-------------AENNY---WACQIGYGNKS 115
+ E G RI TVL++D N V+ +P A N + W +G GN
Sbjct: 93 QWTNE-GNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 151
Query: 116 PENVTRQMLGHFAAHVVNPKEKVTEFRVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKG 175
P T F + KEK+ F V +++ L G + F GQYV +
Sbjct: 152 PTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDA-LPSAGQPLDARHFGVGQYVTATGKTID 210
Query: 176 KGFQGVMKRYGFKGLKAXXXXXXXXXXXXXXXQNQTPGRVLPGKKMPGHMGVDTVTIQNV 235
GFQG M R+G +G R+ PGK+MPGHMG + T+ +
Sbjct: 211 WGFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDA--RIWPGKRMPGHMGYEWRTVSGL 268
Query: 236 QVLDVNDETGTVLVKGSVAGPNGAFVKIQDAIKK 269
+++ +N + + VKGSV G G + ++D +++
Sbjct: 269 EIVRINVDKQVIYVKGSVPGDIGETILLKDCLQE 302
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,687,423
Number of Sequences: 60738
Number of extensions: 693643
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 30,389,216
effective HSP length: 105
effective length of query: 168
effective length of database: 24,011,726
effective search space: 4033969968
effective search space used: 4033969968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)