ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV4172    good          J     KOG4844  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein S27

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4172 1441223 1440900 -108 
         (108 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR215w [J] KOG4844 Mitochondrial ribosomal protein S27               149   6e-37
SPBC30D10.12c [J] KOG4844 Mitochondrial ribosomal protein S27          62   1e-10
At5g44710 [J] KOG4844 Mitochondrial ribosomal protein S27              46   1e-05

>YGR215w [J] KOG4844 Mitochondrial ribosomal protein S27
          Length = 110

 Score =  149 bits (376), Expect = 6e-37
 Identities = 71/110 (64%), Positives = 90/110 (81%), Gaps = 5/110 (4%)

Query: 1   MSVPKSRLLKLAEISAKVFDQNFNPTNARTGSKILAQRLKGPAIANYYGNPDFIRFKQLK 60
           M+VPK+RLLK+AE+SAK+FDQNFNP+  RTGSKIL +RLKGP++A+YYGNPD ++F+ LK
Sbjct: 1   MNVPKARLLKVAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLK 60

Query: 61  KLYPGMNFVDEEEQYRLTMLELRKRRGKGAPTKKRE-----ASGDGKKTK 105
            LYP + FVD EEQYRL+M+E +KRRGKGAP K ++     A G GKK K
Sbjct: 61  TLYPDIEFVDLEEQYRLSMVEAKKRRGKGAPKKMKKDAAATAKGKGKKKK 110


>SPBC30D10.12c [J] KOG4844 Mitochondrial ribosomal protein S27
          Length = 93

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 33/92 (35%), Positives = 54/92 (57%), Gaps = 2/92 (2%)

Query: 5  KSRLLKLAEISAKVFDQNFNPTNARTGSKILAQRLKGPAIANYYGNPDFIRFKQLKKLYP 64
          K+ L +L  +S+K+F   +   N+RTG K + Q LKG  + +YY  P  I ++QL+ L  
Sbjct: 4  KAILEELNILSSKIFGTQYKSNNSRTGRKFVVQELKGAKLKSYY--PATINYRQLRTLLN 61

Query: 65 GMNFVDEEEQYRLTMLELRKRRGKGAPTKKRE 96
             F D +E+ R+ + + R R+GKGA   K++
Sbjct: 62 DKTFPDSDEELRMEIRKGRIRQGKGASKSKKK 93


>At5g44710 [J] KOG4844 Mitochondrial ribosomal protein S27
          Length = 108

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 32/101 (31%), Positives = 49/101 (47%), Gaps = 16/101 (15%)

Query: 11  LAEISAKVFDQNFNPTNARTGSKILAQRLKGPAIANYYGNPDFIRFKQLKKLYPGMNFVD 70
           + E  A++F    NPT  R+  KIL ++L G  +A +Y          +K   P +   +
Sbjct: 18  VTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYP-------YDIKNEDPNVLARE 70

Query: 71  EEEQY----RLTMLELRKRRGKGAPTKKREASGDGKKTKKR 107
           E++      R++ LE+ KRR KG P K     G GK+  KR
Sbjct: 71  EKDSIAIWGRISKLEMLKRRDKGPPKK-----GHGKRAAKR 106


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,807,949
Number of Sequences: 60738
Number of extensions: 282644
Number of successful extensions: 872
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 30,389,216
effective HSP length: 84
effective length of query: 24
effective length of database: 25,287,224
effective search space: 606893376
effective search space used: 606893376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)