ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4248 good C KOG3180 Energy production and conversion Electron transfer flavoprotein, beta subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4248 1465648 1466424 259
(259 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR207c [C] KOG3180 Electron transfer flavoprotein beta subunit 308 4e-84
7301831 [C] KOG3180 Electron transfer flavoprotein beta subunit 224 7e-59
Hs4503609 [C] KOG3180 Electron transfer flavoprotein beta subunit 215 4e-56
At5g43430 [C] KOG3180 Electron transfer flavoprotein beta subunit 214 1e-55
SPAC1805.02c [C] KOG3180 Electron transfer flavoprotein beta sub... 214 1e-55
CE20714 [C] KOG3180 Electron transfer flavoprotein beta subunit 180 2e-45
>YGR207c [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 261
Score = 308 bits (790), Expect = 4e-84
Identities = 158/262 (60%), Positives = 197/262 (74%), Gaps = 4/262 (1%)
Query: 1 MSSK--LRILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHP 58
MS+K LRILVPVKRVVD I+PRVNK T +ET +KFSINPFDDIAVEE++++KE +
Sbjct: 1 MSAKQQLRILVPVKRVVDFQIKPRVNKTLTGIETSGIKFSINPFDDIAVEEAIRIKEKNK 60
Query: 59 DAVESIHAVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTE-LEPLVISKVLKKIVEDKNA 117
VES HAVS+G KAQD+LR LAKG D+ +L++ E +EPL I+K+LK +VE K +
Sbjct: 61 SLVESTHAVSIGSAKAQDILRNCLAKGIDTCSLIDSVGKENIEPLAIAKILKAVVEKKGS 120
Query: 118 NLVVLGKQAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGASVRVTKEIDGGEEIVVA 177
NLV++GKQAIDDD NNTGQMLAGLLNWPQATNA KVE L++G V+VT+EID GEE++ A
Sbjct: 121 NLVLMGKQAIDDDCNNTGQMLAGLLNWPQATNAAKVEFLDNG-RVQVTREIDDGEEVIEA 179
Query: 178 KLPMIITTDLRLNTPRYATLPNXXXXXXXXXXXXXXXXDFEGINLDPQLKLLKVEEPPVK 237
LPM+ITTDLRLNTPRY LP DF IN++PQLK++ +EEP K
Sbjct: 180 SLPMVITTDLRLNTPRYVGLPKLMKAKKKPIEKLDIAKDFPEINIEPQLKIVSMEEPKTK 239
Query: 238 SAGIKVSSVDELVSKLKEAKLV 259
S G+K++SVDEL+ KLKE K +
Sbjct: 240 SPGVKLNSVDELIEKLKEVKAI 261
>7301831 [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 253
Score = 224 bits (572), Expect = 7e-59
Identities = 122/253 (48%), Positives = 169/253 (66%), Gaps = 9/253 (3%)
Query: 6 RILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHPDAVESIH 65
R+LV VKRV+D+A++ RV T V T+ +K S+NPFD+IAVEE+VKLKE E +
Sbjct: 3 RVLVGVKRVIDYAVKVRVKPDKTGVVTQGVKHSMNPFDEIAVEEAVKLKEKK--LAEEVI 60
Query: 66 AVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTE---LEPLVISKVLKKIVEDKNANLVVL 122
AVSVGP ++Q+V+RTALA G D VE + E L+P+ +SK+L K+ D+ A+LV+L
Sbjct: 61 AVSVGPAQSQEVIRTALAMGADRGVHVEIPAAEYELLQPIHVSKILAKLALDEKADLVIL 120
Query: 123 GKQAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGASVRVTKEIDGGEEIVVAKLPMI 182
GKQAIDDD+N T QM A +L+WPQ T K+E + A + +T+EIDGG E + K P +
Sbjct: 121 GKQAIDDDANQTAQMTAAVLDWPQGTFCNKIE--KTDAGLTITREIDGGLETIKTKTPAV 178
Query: 183 ITTDLRLNTPRYATLPNXXXXXXXXXXXXXXXXDFEGINLDPQLKLLKVEEPPVKSAGIK 242
++ DLRLNTPRYATLPN G++ P+++++ VE+PPV+ AG
Sbjct: 179 LSADLRLNTPRYATLPNIMKAKKKPLKKVTAKD--LGVDTSPRIEVISVEDPPVRQAGAT 236
Query: 243 VSSVDELVSKLKE 255
V+ VD LV+KLKE
Sbjct: 237 VADVDALVAKLKE 249
>Hs4503609 [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 255
Score = 215 bits (548), Expect = 4e-56
Identities = 121/256 (47%), Positives = 167/256 (64%), Gaps = 9/256 (3%)
Query: 3 SKLRILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHPDAVE 62
++LR+LV VKRV+D+A++ RV T V T +K S+NPF +IAVEE+V+LKE V+
Sbjct: 2 AELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKK--LVK 59
Query: 63 SIHAVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTELE---PLVISKVLKKIVEDKNANL 119
+ AVS GP + Q+ +RTALA G D VE E E PL +++VL K+ E + +L
Sbjct: 60 EVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDL 119
Query: 120 VVLGKQAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGASVRVTKEIDGGEEIVVAKL 179
V+LGKQAIDDD N TGQM AG L+WPQ T A +V L +G ++V +EIDGG E + KL
Sbjct: 120 VLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTL--EGDKLKVEREIDGGLETLRLKL 177
Query: 180 PMIITTDLRLNTPRYATLPNXXXXXXXXXXXXXXXXDFEGINLDPQLKLLKVEEPPVKSA 239
P ++T DLRLN PRYATLPN G++L +L ++ VE+PP ++A
Sbjct: 178 PAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGD--LGVDLTSKLSVISVEDPPQRTA 235
Query: 240 GIKVSSVDELVSKLKE 255
G+KV + ++LV+KLKE
Sbjct: 236 GVKVETTEDLVAKLKE 251
>At5g43430 [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 251
Score = 214 bits (545), Expect = 1e-55
Identities = 123/256 (48%), Positives = 168/256 (65%), Gaps = 6/256 (2%)
Query: 5 LRILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHPDAVESI 64
++ILV VKRVVD+A++ RV T VET+N+K S+NPF +IA+EE++++KE + +
Sbjct: 1 MKILVAVKRVVDYAVKIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEA--GFAKEV 58
Query: 65 HAVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTELEPLVISKVLKKIVEDKNANLVVLGK 124
AVS+GP + D LRT LA G D VE +S L PL I+K+LK + + +N L+ LGK
Sbjct: 59 IAVSIGPSQCVDTLRTGLAMGADRGIHVETNSIFL-PLTIAKILKSLADVENPGLIFLGK 117
Query: 125 QAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGASVRVTKEIDGGEEIVVAKLPMIIT 184
QAIDDD N TGQM+A LL WPQAT A KV L +D V +E+DGG E + LP +IT
Sbjct: 118 QAIDDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVIT 177
Query: 185 TDLRLNTPRYATLPNXXXXXXXXXXXXXXXXDFEGINLDPQLKLLKVEEPPVKSAGIKVS 244
TDLRLN PRYA+LPN D + +++ +++L+V EPP + +G+ VS
Sbjct: 178 TDLRLNQPRYASLPN-IMKAKSKPIKKMTVQDLK-VDIKSDIEILEVTEPPKRKSGVMVS 235
Query: 245 SVDELVSKLK-EAKLV 259
SVDEL+ KLK EA +V
Sbjct: 236 SVDELIDKLKNEAHVV 251
>SPAC1805.02c [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 254
Score = 214 bits (544), Expect = 1e-55
Identities = 118/253 (46%), Positives = 160/253 (62%), Gaps = 4/253 (1%)
Query: 3 SKLRILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHPDAVE 62
SK+RILV VKR +D+ ++PR+N T V+ K SINPF DIAVEE++++KET + +E
Sbjct: 2 SKIRILVGVKRTLDYMLKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETLKNRIE 61
Query: 63 SIHAVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTELEPLVISKVLKKIVEDKNANLVVL 122
V+ G ++ +LR LAKG + L+ ELEPL ++K+LK VE + +NLV+L
Sbjct: 62 DTLVVTAGQTSSEPILRQCLAKGIGRAALINVGEKELEPLSVAKLLKATVEKEKSNLVLL 121
Query: 123 GKQAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGASVRVTKEIDGGEEIVVAKLPMI 182
GKQAIDDD++ TG MLA +L WPQ T+A KV + +G V VT+EIDGGEE + + LP I
Sbjct: 122 GKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRI--EGDKVIVTREIDGGEETLSSTLPAI 179
Query: 183 ITTDLRLNTPRYATLPNXXXXXXXXXXXXXXXXDFEGINLDPQLKLLKVEEPPVKSAGIK 242
ITTDLRLN PR+A L + G+ +D +L+ + V EP K I
Sbjct: 180 ITTDLRLNVPRFANL--AKVMKARKAPLGKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIM 237
Query: 243 VSSVDELVSKLKE 255
V SVDE+V LKE
Sbjct: 238 VKSVDEMVKTLKE 250
>CE20714 [C] KOG3180 Electron transfer flavoprotein beta subunit
Length = 293
Score = 180 bits (457), Expect = 2e-45
Identities = 122/299 (40%), Positives = 165/299 (54%), Gaps = 52/299 (17%)
Query: 5 LRILVPVKRVVDHAIRPRVNKQFTNVETKNLKFSINPFDDIAVEESVKLKETHPDAVESI 64
++ILV VKRVVD+A++ RV + V T+ ++ S+NPFD+IA+EE+VKLKE +
Sbjct: 1 MKILVGVKRVVDYAVKIRVKPDRSGVVTEGVQHSMNPFDEIALEEAVKLKEKK--LATEV 58
Query: 65 HAVSVGPLKAQDVLRTALAKGCDSSTLVEHDSTE---LEPLVISKVLKKIVEDKNANLVV 121
A S+G K+ +VLRTALAKG D + V+ E LE ++K L+KIVE + + V
Sbjct: 59 VAFSLGGPKSAEVLRTALAKGADKAVHVQVTDAEAGKLESFHVAKALQKIVEQEKFDAVF 118
Query: 122 LGKQAIDDDSNNTGQMLAGLLNWPQATNACKVELLEDGAS-VRVTKEIDGGEEIV----- 175
LGKQAIDDDS+ T +LAGLL WPQA A KVE + GA ++VT+EIDGG + +
Sbjct: 119 LGKQAIDDDSSQTAPILAGLLEWPQALYASKVE--DAGAGHMKVTREIDGGLDTIKVILT 176
Query: 176 ---------------------------------VAKLPMIITTDLRLNTPRYATLPNXXX 202
K+P +++ DLRLN PRYATLPN
Sbjct: 177 ISIDSREKQPRTERETGLDIATLRHGFSFFRLFFVKVPFVLSADLRLNEPRYATLPN--- 233
Query: 203 XXXXXXXXXXXXXDFEGINLD--PQLKLLKVEEPPVKSAGIKVSSVDELVSKLKEAKLV 259
+ +N+D PQ + L+V EPPV+ AG V V LV+KLKE V
Sbjct: 234 -IMKAKKKPLKNIPIKDLNVDITPQTETLEVTEPPVRQAGGFVDDVSALVAKLKEKGFV 291
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,381,096
Number of Sequences: 60738
Number of extensions: 503145
Number of successful extensions: 1161
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 7
length of query: 259
length of database: 30,389,216
effective HSP length: 104
effective length of query: 155
effective length of database: 24,072,464
effective search space: 3731231920
effective search space used: 3731231920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)