ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV4256    suspect: LH   A     KOG1784  RNA processing and modification                                Small Nuclear ribonucleoprotein splicing factor

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4256 1468048 1467761 -96  
         (96 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YJR022w [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor    53   8e-08

>YJR022w [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor
          Length = 128

 Score = 52.8 bits (125), Expect = 8e-08
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 13/108 (12%)

Query: 1   MSALLKDYLDKKVMLVNVDGDTYYGEMKGFDHAGNMIL------LKDSKIC---IIRSSE 51
           MSA LKDYL+K+V+++ VDG+     + GFD   N+ +      +    IC   ++R SE
Sbjct: 20  MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE 79

Query: 52  VVLCGLIDDIPEEKELAKL--QKFPACKN-KLPFKEEIDIWSERWANR 96
           + L GLI D   +  LA +  +K P  K+ K   + E  IW + + ++
Sbjct: 80  IALVGLI-DAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESK 126


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,261,006
Number of Sequences: 60738
Number of extensions: 232305
Number of successful extensions: 617
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 1
length of query: 96
length of database: 30,389,216
effective HSP length: 72
effective length of query: 24
effective length of database: 26,016,080
effective search space: 624385920
effective search space used: 624385920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)