ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV4291.1    suspect: Pn  R     KOG4197   General function prediction only                               FOG: PPR repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4291.1 1475536 1475324 -71  
         (71 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52640 [R] KOG4197 FOG: PPR repeat                                  30   0.60 
CE18250 [T] KOG1095 Protein tyrosine kinase                            27   6.7  
7289410 [U] KOG2066 Vacuolar assembly/sorting protein VPS41            26   8.7  

>At1g52640 [R] KOG4197 FOG: PPR repeat
          Length = 523

 Score = 30.0 bits (66), Expect = 0.60
 Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 9/55 (16%)

Query: 3   LIKRCKALTLNGFSSKYFFDWSSSVPDGASQTDS------LVSGLKKYSRFFDLL 51
           ++KRCK L   GF +  FF W+  +PD A   +S      ++   K+++  +D L
Sbjct: 74  VLKRCKNL---GFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFL 125


>CE18250 [T] KOG1095 Protein tyrosine kinase
          Length = 1414

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (55%)

Query: 5   KRCKALTLNGFSSKYFFDWSSSVPDGASQTDS 36
           KRC+  T+  F   YF +     PDG++ TD+
Sbjct: 815 KRCEPPTVCRFRKDYFEEEYCGCPDGSNVTDT 846


>7289410 [U] KOG2066 Vacuolar assembly/sorting protein VPS41
          Length = 841

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 13/38 (34%), Positives = 24/38 (62%), Gaps = 1/38 (2%)

Query: 33  QTDSLVSGLKKYSRFFDLLNLITQGSGS-PVPAMTKLW 69
           +TD  +  L K+S+F + + LI+   G+ PV ++ KL+
Sbjct: 364 ETDDRIEWLIKHSKFEEAMELISANGGNVPVLSVAKLY 401


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,471,172
Number of Sequences: 60738
Number of extensions: 149869
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 30,389,216
effective HSP length: 47
effective length of query: 24
effective length of database: 27,534,530
effective search space: 660828720
effective search space used: 660828720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)