ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4334 good L KOG2518 Replication, recombination and repair 5'-3' exonuclease
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4334 1487301 1489313 671
(671 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR033c [L] KOG2518 5'-3' exonuclease 475 e-134
YDR263c [L] KOG2518 5'-3' exonuclease 392 e-109
SPBC29A10.05 [L] KOG2518 5'-3' exonuclease 229 1e-59
Hs18491020 [L] KOG2518 5'-3' exonuclease 194 5e-49
Hs18491018 [L] KOG2518 5'-3' exonuclease 194 5e-49
Hs18491016 [L] KOG2518 5'-3' exonuclease 194 5e-49
At1g29630 [L] KOG2518 5'-3' exonuclease 188 3e-47
7298467 [L] KOG2518 5'-3' exonuclease 173 9e-43
ECU11g0760 [L] KOG2518 5'-3' exonuclease 151 4e-36
CE28728 [L] KOG2518 5'-3' exonuclease 140 8e-33
At1g18090 [L] KOG2518 5'-3' exonuclease 130 7e-30
7302871 [L] KOG2519 5'-3' exonuclease 82 2e-15
At5g26675 [L] KOG2519 5'-3' exonuclease 77 7e-14
At3g28030 [L] KOG2520 5'-3' exonuclease 75 3e-13
CE22109 [L] KOG2519 5'-3' exonuclease 72 3e-12
ECU03g1080 [L] KOG2519 5'-3' exonuclease 72 4e-12
CE11308 [L] KOG2520 5'-3' exonuclease 67 9e-11
SPAC3G6.06c [L] KOG2519 5'-3' exonuclease 66 2e-10
7297419 [L] KOG2520 5'-3' exonuclease 66 2e-10
YGR258c [L] KOG2520 5'-3' exonuclease 65 3e-10
YKL113c [L] KOG2519 5'-3' exonuclease 63 1e-09
SPBC3E7.08c [L] KOG2520 5'-3' exonuclease 63 1e-09
Hs4758356 [L] KOG2519 5'-3' exonuclease 63 1e-09
Hs4503601 [L] KOG2520 5'-3' exonuclease 62 4e-09
ECU09g1620 [L] KOG2520 5'-3' exonuclease 59 2e-08
SPAC12G12.16c [L] KOG2519 5'-3' exonuclease 51 5e-06
>YOR033c [L] KOG2518 5'-3' exonuclease
Length = 702
Score = 475 bits (1223), Expect = e-134
Identities = 248/454 (54%), Positives = 324/454 (70%), Gaps = 19/454 (4%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLLPQLKPIQNPVSL RY+GE LAIDGYAWLHR+A SCA ELAM +PTDKYLQFFI
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAIDGYAWLHRAACSCAYELAMGKPTDKYLQFFI 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
KR S+L+ FK+ P+ VFDGD+I VKK TE L+ G+++ A DYFQ
Sbjct: 61 KRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQ 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
KCV ITP+MAKC+I Y ++N I Y+VAP+EAD+QMVYLE++ +VQGIISEDSDLLVFGC
Sbjct: 121 KCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCR 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
RLITKLND EC+EI R NF +L + KFPL LT +++ ++VCLSGCDYT+GIPKVGL+T
Sbjct: 181 RLITKLNDYGECLEICRDNFIKLPK-KFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLIT 239
Query: 241 AMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNERLVTLNAI 300
AMK V + T+E++I++I+REGKL +P T+ EY+ A AFQFQRV+CP+ +++V+LN I
Sbjct: 240 AMKLVRRFNTIERIILSIQREGKLMIPDTYINEYEAAVLAFQFQRVFCPIRKKIVSLNEI 299
Query: 301 PNELLNNE----KLFNCIGHAIHKEWKIKDVIFDFEDVDHHLHKRISLGELNPYDFNKPL 356
P L + E +L+ CIG IH+E + K ++ +D+DHHLH +I+ G+LNPYDF++PL
Sbjct: 300 PLYLKDTESKRKRLYACIGFVIHRETQKKQIVHFDDDIDHHLHLKIAQGDLNPYDFHQPL 359
Query: 357 VNREHKLRLKSQSVVMTIDKFCTAKTTAGSSANSKSMNAFIARKSQSLNN---GSGIMS- 412
NREHKL+L S+S + +F TT S A K + +F + ++ +N + I S
Sbjct: 360 ANREHKLQLASKSNI----EFGKTNTT-NSEAKVKPIESFFQKMTKLDHNPKVANNIHSL 414
Query: 413 -----KLETALKRRKLSGPANEHSTKKVVNSQFF 441
KL A+KRRKLS T K S+FF
Sbjct: 415 RQAEDKLTMAIKRRKLSNANVVQETLKDTRSKFF 448
>YDR263c [L] KOG2518 5'-3' exonuclease
Length = 430
Score = 392 bits (1007), Expect = e-109
Identities = 203/428 (47%), Positives = 281/428 (65%), Gaps = 20/428 (4%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLLPQLK IQ VSL +Y +TLAIDGYAWLHR++ +CA EL M++PT+KYLQFFI
Sbjct: 1 MGIPGLLPQLKRIQKQVSLKKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNKYLQFFI 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
KR+ +L+ KI P+ VFDGDS+ VK TE L+ AG+R A +YFQ
Sbjct: 61 KRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQ 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
K V ITP+MAKC+I+Y +++SIPY+VAP+EAD QMVYLEK GL+QGIISEDSDLLVFGC
Sbjct: 121 KSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCK 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
LITKLND + +EI + +F L E FPL +L+E Q R+LVCL+GCDYTSGI KVG+VT
Sbjct: 181 TLITKLNDQGKALEISKDDFSALPE-NFPLGELSEQQFRNLVCLAGCDYTSGIWKVGVVT 239
Query: 241 AMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNERLVTLNAI 300
AMK V + M+ +++ I+R KL F ++ ++AN+AFQ+QRV+CPL+ ++ TLN I
Sbjct: 240 AMKIVKRYSEMKDILIQIERTEKLCFSKAFKQQVEFANYAFQYQRVFCPLSNQITTLNNI 299
Query: 301 PNELLNNE----KLFNCIGHAIHKEWKIKDVIFDFEDVDHHLHKRISLGELNPYDFNKPL 356
P + N+ K+ CIG + + ++ + + +++DH +H+ I+ GEL+P D L
Sbjct: 300 PKAVTNSHAEIIKIMKCIGSVVERGSGVRKDVINTKNIDHKVHEMIAKGELHPVDMASKL 359
Query: 357 VNREHKLRLKSQSVVMTIDKFCTAKTTAGSSANSKSMNAFIARKSQSLNNGSGIMSKLET 416
+NRE KL+ + K G S N+F + Q L + ++S+ E
Sbjct: 360 INRERKLKAR---------KLFKVGLLGGES------NSFNKKVEQPLVDTQDVLSEREN 404
Query: 417 ALKRRKLS 424
+L + S
Sbjct: 405 SLDNKNAS 412
>SPBC29A10.05 [L] KOG2518 5'-3' exonuclease
Length = 571
Score = 229 bits (583), Expect = 1e-59
Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 3/311 (0%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLL LKP+Q + + G+TL +DGY WLH++ +CA ELA ++ TDKYL++ I
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
+ ML+++ + P VFDG + K TE L++ G + A F
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFS 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+CV +TP+MA +I L+ + I +VAPYEADAQ+VYLEK+ ++ GII+EDSD+LVFG
Sbjct: 121 RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQ 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
++ K++ CI I R + + +L ++LR + SGCDYT G+ +GL T
Sbjct: 181 TVLFKMDGFGNCITIRRNDIANAQDLNL---RLPIEKLRHMAIFSGCDYTDGVAGMGLKT 237
Query: 241 AMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNERLVTLNAI 300
A++Y+ K I A++ + L VP +F +E+ A+ AF+ QRV+CP ++ LV L+
Sbjct: 238 ALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPP 297
Query: 301 PNELLNNEKLF 311
EL +E F
Sbjct: 298 ERELSVHEDAF 308
>Hs18491020 [L] KOG2518 5'-3' exonuclease
Length = 846
Score = 194 bits (492), Expect = 5e-49
Identities = 111/309 (35%), Positives = 171/309 (54%), Gaps = 9/309 (2%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLL +K P+ + +Y+G+ +A+D Y WLH+ A +CA +LA +PTD+Y+ F +
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
K ++ML I P VFDG ++ KKE E L G A + F
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+ ++IT MA VI+ + + +VAPYEADAQ+ YL K G+VQ II+EDSDLL FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
++I K++ +EID+ RL + TE++ R + LSGCDY S + +GL
Sbjct: 181 KVILKMDQFGNGLEIDQ---ARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAK 237
Query: 241 AMKYVVKNRTMEQMIMAIKREG-----KLSVPHTFWEEYQYANFAFQFQRVWCPLNERLV 295
A K V++ ++ IK+ G ++VP + + AN F +Q V+ P+ +L+
Sbjct: 238 ACK-VLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296
Query: 296 TLNAIPNEL 304
LNA +++
Sbjct: 297 PLNAYEDDV 305
>Hs18491018 [L] KOG2518 5'-3' exonuclease
Length = 803
Score = 194 bits (492), Expect = 5e-49
Identities = 111/309 (35%), Positives = 171/309 (54%), Gaps = 9/309 (2%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLL +K P+ + +Y+G+ +A+D Y WLH+ A +CA +LA +PTD+Y+ F +
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
K ++ML I P VFDG ++ KKE E L G A + F
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+ ++IT MA VI+ + + +VAPYEADAQ+ YL K G+VQ II+EDSDLL FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
++I K++ +EID+ RL + TE++ R + LSGCDY S + +GL
Sbjct: 181 KVILKMDQFGNGLEIDQ---ARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAK 237
Query: 241 AMKYVVKNRTMEQMIMAIKREG-----KLSVPHTFWEEYQYANFAFQFQRVWCPLNERLV 295
A K V++ ++ IK+ G ++VP + + AN F +Q V+ P+ +L+
Sbjct: 238 ACK-VLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296
Query: 296 TLNAIPNEL 304
LNA +++
Sbjct: 297 PLNAYEDDV 305
>Hs18491016 [L] KOG2518 5'-3' exonuclease
Length = 846
Score = 194 bits (492), Expect = 5e-49
Identities = 111/309 (35%), Positives = 171/309 (54%), Gaps = 9/309 (2%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLL +K P+ + +Y+G+ +A+D Y WLH+ A +CA +LA +PTD+Y+ F +
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
K ++ML I P VFDG ++ KKE E L G A + F
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+ ++IT MA VI+ + + +VAPYEADAQ+ YL K G+VQ II+EDSDLL FGC
Sbjct: 121 RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
++I K++ +EID+ RL + TE++ R + LSGCDY S + +GL
Sbjct: 181 KVILKMDQFGNGLEIDQ---ARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAK 237
Query: 241 AMKYVVKNRTMEQMIMAIKREG-----KLSVPHTFWEEYQYANFAFQFQRVWCPLNERLV 295
A K V++ ++ IK+ G ++VP + + AN F +Q V+ P+ +L+
Sbjct: 238 ACK-VLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296
Query: 296 TLNAIPNEL 304
LNA +++
Sbjct: 297 PLNAYEDDV 305
>At1g29630 [L] KOG2518 5'-3' exonuclease
Length = 317
Score = 188 bits (477), Expect = 3e-47
Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 3/304 (0%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+ GLLP LK I P+ + +G +A+D Y+WLH+ A SC+ EL PT +++Q+ +
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
R+++LRH + P VFDG + +K E E G+ AY+ +
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
K V I+P +A +I+ L+ ++ YVVAPYEADAQM +L V II+EDSDL+ FGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
R+I K++ +E + + LS + L + LSGCDY +P +GL
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKD--LSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKR 238
Query: 241 AMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNERLVTLNAI 300
A + K ++ +++I +K +SVP + E ++ A F+ QRV+ P E ++ L I
Sbjct: 239 AHALITKFKSYDRVIKHLK-YSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDI 297
Query: 301 PNEL 304
+ L
Sbjct: 298 SDNL 301
>7298467 [L] KOG2518 5'-3' exonuclease
Length = 732
Score = 173 bits (438), Expect = 9e-43
Identities = 110/363 (30%), Positives = 176/363 (48%), Gaps = 31/363 (8%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG++GL+P + + + L +G T+A+D Y WLH+ CA +LA + TD Y+Q+ +
Sbjct: 1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDVYIQYCL 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
K ++ML + I P VFDG + K TE L G A + +
Sbjct: 61 KYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHMR 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+CV +T DMA +I + ++ +VAPYEADAQM +L + + Q II+EDSDL +FG
Sbjct: 121 RCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAK 180
Query: 181 RLITKLNDNAECIEIDRRNFE---RLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVG 237
+I KL+ N + ++ E K+ D+ R + LSGCDY +P +G
Sbjct: 181 NIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHF-----DKFRRMCILSGCDYLDSLPGIG 235
Query: 238 LVTAMKYVVKNRTMEQMIMAIKR------EGKLSVPHTFWEEYQYANFAFQFQRVWCPLN 291
L A K+++K E M +A+K+ L V + E + A F+ ++ PL
Sbjct: 236 LAKACKFILKTE-QEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLE 294
Query: 292 ERLVTLNAIPNELLNNEKLFNCIGHAIHKEWKIKDVIFDFEDVDHHLHKRISLGELNPYD 351
R+ L A+ + +E+ + G + ED + LH ++LG LNP+
Sbjct: 295 RRMQRLCAL-EDYETDERYCSNAGTLL-------------EDSEQALH--LALGNLNPFS 338
Query: 352 FNK 354
+
Sbjct: 339 MKR 341
>ECU11g0760 [L] KOG2518 5'-3' exonuclease
Length = 366
Score = 151 bits (381), Expect = 4e-36
Identities = 85/293 (29%), Positives = 161/293 (54%), Gaps = 9/293 (3%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+SGLLP + P ++ Y+ + + +DG+AWL++ A E+ PT +++ F
Sbjct: 1 MGISGLLPIVAPKLVKKHISSYKRQRVGVDGHAWLYQILPCVAEEMFFKVPTKRHVDLFE 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
+++ +L + I P V DGD + K+ET D A + +
Sbjct: 61 EKVKLLESYGIIPVIVLDGDLLSSKEETNRKRRIRKEKSRKEAEYWLMRNDPAKAKGFMR 120
Query: 121 KCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCT 180
+C+++T ++ + L+ ++ Y+++PYE+DAQ+ +L++ G + I++EDSDL+ +G +
Sbjct: 121 QCIAVTREVVSDIARMLERINVEYIISPYESDAQLCFLQRIGYIDCILTEDSDLIPYGSS 180
Query: 181 RLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVT 240
+++ K D+A E +R E L+E K K E+ + + LSGCDY + I VG+VT
Sbjct: 181 KVLYKF-DSAFVQEFNR---ECLSEVK---GKDFEENILDISILSGCDYLASIQGVGVVT 233
Query: 241 AMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNER 293
A + + + +T+E+++ +K + VP ++ E++ A F Q V+ P+ +R
Sbjct: 234 AHRLLSREKTVERVVEYLKY--RKPVPSSYLEDFSRAKKTFLHQIVYDPIQKR 284
>CE28728 [L] KOG2518 5'-3' exonuclease
Length = 639
Score = 140 bits (352), Expect = 8e-33
Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 10/315 (3%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MG+SGLLP +K ++ +G+++AID LHR C ++ M + T Y+ +
Sbjct: 1 MGISGLLPFVKNACRKGNILELRGKSVAIDVSCLLHRGLTGCMDKIHMGEETQSYVNYVN 60
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQ 120
K + L VFDG + KK T L G R A D ++
Sbjct: 61 KYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTYR 120
Query: 121 KCVSITPDMAKCVIEYLQ-MNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGC 179
SI+ D+ + I+Y + M ++ VVAPYEADAQ+ YL ++ LV +I+EDSDL+VFGC
Sbjct: 121 LATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFGC 180
Query: 180 TRLITKLND-NAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDY-TSGIPKVG 237
+ K EC ++ N + G+ K + R + LSGCDY +G+P VG
Sbjct: 181 EMIYFKWQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGLPGVG 240
Query: 238 LVTAMKY-----VVKNRTMEQMIMAIKREGKLS--VPHTFWEEYQYANFAFQFQRVWCPL 290
L TA K+ + RT+ + + + + KL V F ++ A F+ Q V+ P
Sbjct: 241 LSTAAKFFSMTSIKDLRTLLRKVPSYLKNPKLKEHVNDEFIRNFEKAENTFKHQIVFDPR 300
Query: 291 NERLVTLNAIPNELL 305
L P E+L
Sbjct: 301 ERCQKPLTPYPKEVL 315
>At1g18090 [L] KOG2518 5'-3' exonuclease
Length = 534
Score = 130 bits (327), Expect = 7e-30
Identities = 81/271 (29%), Positives = 143/271 (51%), Gaps = 9/271 (3%)
Query: 44 MELAMDQPTDK---YLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXX 100
MEL +D K Y+ +F+ R+++L+H++I P V DG ++ K T
Sbjct: 1 MELCLDTDGKKKLRYIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRQRKANF 60
Query: 101 XXXXXLFEAGDRRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLE- 159
+ G+ A + FQ+ VS+T MA +I+ L+ ++ ++VAPYEADAQ+ YL
Sbjct: 61 DAAMVKLKEGNVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSS 120
Query: 160 ---KQGLVQGIISEDSDLLVFGCTRLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTED 216
+QG + +I+EDSDLL +GC +I K++ + E+ N + + K ++
Sbjct: 121 LELEQGGIAAVITEDSDLLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQE 180
Query: 217 QLRSLVCLSGCDYTSGIPKVGLVTAMKYVVKNRTMEQMIMAIK-REGKLSVPHTFWEEYQ 275
++ L+GCD+ +P VG+ A ++ K +++E ++ +K ++GKL VP + +
Sbjct: 181 LFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKL-VPDDYSSSFT 239
Query: 276 YANFAFQFQRVWCPLNERLVTLNAIPNELLN 306
A FQ RV+ ++L L + + LLN
Sbjct: 240 EAVSVFQHARVYDFDAKKLKHLKPLSHNLLN 270
>7302871 [L] KOG2519 5'-3' exonuclease
Length = 385
Score = 82.4 bits (202), Expect = 2e-15
Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 13/277 (4%)
Query: 1 MGVSGLLPQLKPIQNPVS-LARYQGETLAIDGYAWLHR---SAHSCAMELAM--DQPTDK 54
+G+S L+ L P S + + G +AID L++ + S +LA PT
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 55 YLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRL 114
+ F + I +L + I P +VFDG +K +AGD
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 115 AYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDL 174
+ ++ V +T + AK E L + +PYV AP EA+AQ L K G V +ED D
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 175 LVFGCTRLITKLN-DNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGI 233
L FG T+L+ L A + + ++++L EG + + L L GCDY I
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEG----LAINNREFIDLCILLGCDYCESI 238
Query: 234 PKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVPHTF 270
+G A++ + R +E ++ + K +VP +
Sbjct: 239 KGIGPKRAIELINTYRDIETILDNLD-SSKYTVPENW 274
>At5g26675 [L] KOG2519 5'-3' exonuclease
Length = 465
Score = 77.4 bits (189), Expect = 7e-14
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 22/235 (9%)
Query: 55 YLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRL 114
+LQ R L I P +VFDG ++K++ EAG++
Sbjct: 64 HLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKED 123
Query: 115 AYDYFQKCVSITPD-----------MAKCVIEYLQMNSIP-YVVAPYEADAQMVYLEKQG 162
Y ++ V +T M V+E+ + + Y+ A EA+AQ L K G
Sbjct: 124 IEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEFEKKTDVASYIQATSEAEAQCAALCKSG 183
Query: 163 LVQGIISEDSDLLVFGCTRLITKLND-NAECIEIDRRNFERLNEGKFPLSKLTEDQLRSL 221
V G+ SED D L FG + + L D ++ I + ++ E +LT DQ L
Sbjct: 184 KVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEE----LQLTMDQFIDL 239
Query: 222 VCLSGCDYTSGIPKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQY 276
LSGCDY I +G TA+K + ++ ++E ++ + +E + +P EE+ Y
Sbjct: 240 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKE-RYQIP----EEWPY 289
>At3g28030 [L] KOG2520 5'-3' exonuclease
Length = 1482
Score = 75.1 bits (183), Expect = 3e-13
Identities = 42/122 (34%), Positives = 72/122 (58%), Gaps = 6/122 (4%)
Query: 124 SITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLI 183
S++ +M E LQ+ IPY++AP EA+AQ ++E+ LV GI+++DSD+ +FG +
Sbjct: 920 SVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVY 979
Query: 184 TKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMK 243
+ D+ + +E F + E + LS+ D++ + L G DYT GI +G+V A++
Sbjct: 980 KNIFDDRKYVE---TYFMKDIEKELGLSR---DKIIRMAMLLGSDYTEGISGIGIVNAIE 1033
Query: 244 YV 245
V
Sbjct: 1034 VV 1035
>CE22109 [L] KOG2519 5'-3' exonuclease
Length = 382
Score = 72.0 bits (175), Expect = 3e-12
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 9/237 (3%)
Query: 24 GETLAIDG----YAWLHRSAHSCAMELAMDQPTDKYLQFFIKRISMLRHFKITPFFVFDG 79
G T+AID Y +L + + D T +L + R + + P +VFDG
Sbjct: 28 GRTVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGMLNRTVRMFENGVKPVYVFDG 87
Query: 80 DSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQKCVSITPDMAKCVIEYLQM 139
+K E GD + A + ++ V +T L +
Sbjct: 88 KPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGL 147
Query: 140 NSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLITK-LNDNAECIEIDRR 198
IP V AP EA+AQ +L K G V G ++ED D L FG T L+ L A+ I I
Sbjct: 148 MGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEF 207
Query: 199 NFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMKYVVKNRTMEQMI 255
N E KL+ ++ L L GCDY I VG A++ + +++ +E ++
Sbjct: 208 NLSLALEE----MKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETIL 260
>ECU03g1080 [L] KOG2519 5'-3' exonuclease
Length = 345
Score = 71.6 bits (174), Expect = 4e-12
Identities = 62/242 (25%), Positives = 100/242 (40%), Gaps = 10/242 (4%)
Query: 19 LARYQGETLAIDG----YAWLHRSAHSCAMELAMDQPTDKYLQFFIKRISMLRHFKITPF 74
L Y + +AID Y +L A D PT + FF + I M+ ITP
Sbjct: 23 LVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPTSHLVGFFYRTIRMVE-LGITPV 81
Query: 75 FVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGDRRLAYDYFQKCVSITPDMAKCVI 134
+VFDG ++K + E GD+ L Y ++ +T
Sbjct: 82 YVFDGVPPEIKMKELEKRKERRAAADREYREASEVGDKELMEMYDKRKTKVTGVHVDECK 141
Query: 135 EYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLITKLN-DNAECI 193
L + IP+ AP EA+A L K+ V G+ +ED D L FG ++ N ++ +
Sbjct: 142 RLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMDALTFGSPVVLRNFNGTQSKRL 201
Query: 194 EIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMKYVVKNRTMEQ 253
+ N ++ E L + L L GCDY S + +G A+ + K+R++
Sbjct: 202 PVMEHNLPQILED----LSLDHSEFIDLCILLGCDYCSTLKGIGPKKALGLIKKHRSIGN 257
Query: 254 MI 255
++
Sbjct: 258 IL 259
>CE11308 [L] KOG2520 5'-3' exonuclease
Length = 829
Score = 67.0 bits (162), Expect = 9e-11
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 126 TPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLITK 185
TP++ + + E+L IP++ +P EA+AQ V LE+ GLV G++S+DSD+ FG +
Sbjct: 474 TPELYRDLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRH 533
Query: 186 LNDNAECIEIDRRNFER--LNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMK 243
+ ++ R E+ N L L + S+ LSG DY +G+ KVG + A++
Sbjct: 534 MFSKNRRVQ---RYGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALE 590
Query: 244 YV 245
V
Sbjct: 591 LV 592
>SPAC3G6.06c [L] KOG2519 5'-3' exonuclease
Length = 380
Score = 65.9 bits (159), Expect = 2e-10
Identities = 72/278 (25%), Positives = 108/278 (37%), Gaps = 17/278 (6%)
Query: 1 MGVSGLLPQLKPIQNPVS-----LARYQGETLAIDG----YAWLHRSAHSCAMELAMDQ- 50
MG+ GL L P S + Y G +AID Y +L + +L +Q
Sbjct: 1 MGIKGLAQVLSE-HAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQG 59
Query: 51 PTDKYLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAG 110
T +L R + I P FVFDG +K E G
Sbjct: 60 ETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVG 119
Query: 111 DRRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISE 170
+ + ++ V +T L++ IP+V AP EA+AQ L + G V SE
Sbjct: 120 TAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASE 179
Query: 171 DSDLLVFGCTRLITKLNDNAECIE-IDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDY 229
D D L F L+ L + + E I N E+ G ++ +Q L L GCDY
Sbjct: 180 DMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNG----LDMSVEQFVDLCILLGCDY 235
Query: 230 TSGIPKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVP 267
I VG A++ + + T+++ + R K +P
Sbjct: 236 CEPIRGVGPARAVELIRQYGTLDRFVKEADR-SKYPIP 272
>7297419 [L] KOG2520 5'-3' exonuclease
Length = 1236
Score = 65.9 bits (159), Expect = 2e-10
Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 123 VSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRL 182
+SI+ M+ E L++ IPY+VAP EA+AQ +L L G I++DSD+ +FG R
Sbjct: 853 MSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFG-GRT 911
Query: 183 ITK--LNDNAECIEIDRRNFER---LNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVG 237
+ K N +E E+ N GK L L CL G DYT+GI +G
Sbjct: 912 VYKNFFAQNKHVMEFRAEQIEQTFNCNRGK----------LIQLACLVGSDYTTGIHGIG 961
Query: 238 LVTAMK 243
VTA++
Sbjct: 962 AVTALE 967
>YGR258c [L] KOG2520 5'-3' exonuclease
Length = 1031
Score = 65.5 bits (158), Expect = 3e-10
Identities = 41/123 (33%), Positives = 63/123 (50%), Gaps = 6/123 (4%)
Query: 125 ITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLIT 184
+T DM K V E L IPY+ AP EA+AQ L + LV GII++DSD+ +FG T++
Sbjct: 767 VTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYK 826
Query: 185 KLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMKY 244
+ +E E L L + L L G DYT+G+ +G V++++
Sbjct: 827 NMFHEKNYVEFYDA------ESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEV 880
Query: 245 VVK 247
+ +
Sbjct: 881 IAE 883
>YKL113c [L] KOG2519 5'-3' exonuclease
Length = 382
Score = 63.2 bits (152), Expect = 1e-09
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 9/211 (4%)
Query: 50 QPTDKYLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEA 109
+ T + F + + M+ + I P +VFDG +K L EA
Sbjct: 60 ETTSHLMGMFYRTLRMIDN-GIKPCYVFDGKPPDLKSHE---LTKRSSRRVETEKKLAEA 115
Query: 110 GDRRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIIS 169
++ V ++ + + + L + IPY++AP EA+AQ L K+G V S
Sbjct: 116 TTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAAS 175
Query: 170 EDSDLLVFGCTRLITKLN-DNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCD 228
ED D L + L+ L A+ I + E + G LT +Q L + GCD
Sbjct: 176 EDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRG----LDLTIEQFVDLCIMLGCD 231
Query: 229 YTSGIPKVGLVTAMKYVVKNRTMEQMIMAIK 259
Y I VG VTA+K + + ++E+++ I+
Sbjct: 232 YCESIRGVGPVTALKLIKTHGSIEKIVEFIE 262
>SPBC3E7.08c [L] KOG2520 5'-3' exonuclease
Length = 1112
Score = 63.2 bits (152), Expect = 1e-09
Identities = 43/124 (34%), Positives = 67/124 (53%), Gaps = 16/124 (12%)
Query: 125 ITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLIT 184
+T M K E L++ +PY+VAP EA+AQ L + LV GI+++DSD+ +FG TR+
Sbjct: 752 VTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYR 811
Query: 185 KLNDNAECIEI-----DRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLV 239
+ + + +E+ +R F N + L KL L G DYT G+ +VG V
Sbjct: 812 NMFNQNKFVELYLMDDMKREF---NVNQMDLIKLAH--------LLGSDYTMGLSRVGPV 860
Query: 240 TAMK 243
A++
Sbjct: 861 LALE 864
Score = 54.3 bits (129), Expect = 6e-07
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MGVSGLLPQLKPIQNPVSLARYQGETLAIDGYAWLHRSAHSCAMELAMDQPTDKYLQFFI 60
MGVSGL L+P++ PV L + LAID W+++ + +Q ++ F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFL-KAVRDKEGNQLKSSHVVGFF 59
Query: 61 KRISMLRHFKITPFFVFDGDSIQVKKET 88
+RI L F I P FVFDG + +K++T
Sbjct: 60 RRICKLLFFGIKPVFVFDGGAPSLKRQT 87
>Hs4758356 [L] KOG2519 5'-3' exonuclease
Length = 380
Score = 63.2 bits (152), Expect = 1e-09
Identities = 64/280 (22%), Positives = 111/280 (38%), Gaps = 16/280 (5%)
Query: 1 MGVSGLLPQLKPIQNPV----SLARYQGETLAIDGYAWLHRSAHSC-----AMELAMDQP 51
MG+ GL + + + Y G +AID +++ + ++ +
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 60
Query: 52 TDKYLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELXXXXXXXXXXXXXXXLFEAGD 111
T + F + I M+ + I P +VFDG Q+K AG
Sbjct: 61 TSHLMGMFYRTIRMMEN-GIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 112 RRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISED 171
+ + ++ V +T L + IPY+ AP EA+A L K G V +ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 172 SDLLVFGCTRLITKLN-DNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYT 230
D L FG L+ L A+ + I + R+ + L ++Q L L G DY
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQE----LGLNQEQFVDLCILLGSDYC 235
Query: 231 SGIPKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVPHTF 270
I +G A+ + K++++E+++ + K VP +
Sbjct: 236 ESIRGIGPKRAVDLIQKHKSIEEIVRRLD-PNKYPVPENW 274
>Hs4503601 [L] KOG2520 5'-3' exonuclease
Length = 1186
Score = 61.6 bits (148), Expect = 4e-09
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 135 EYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDLLVFGCTRLITKLNDNAECIE 194
E L++ IPY+ AP EA+AQ L+ G I++DSD+ +FG + + + +E
Sbjct: 774 ELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVE 833
Query: 195 ----IDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMK 243
+D N L+ K L +L L G DYT GIP VG VTAM+
Sbjct: 834 YYQYVDFHNQLGLDRNK----------LINLAYLLGSDYTEGIPTVGCVTAME 876
>ECU09g1620 [L] KOG2520 5'-3' exonuclease
Length = 562
Score = 58.9 bits (141), Expect = 2e-08
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 112 RRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISED 171
R+++ D Q+ I+ + V L++ +IPYV AP EAD Q ++ +V G+I+ED
Sbjct: 372 RKISSDVGQESREISRVLG-LVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITED 430
Query: 172 SDLLVFGCTRLITKLNDNAECIEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTS 231
+D+L++G T N + EI++ + +R+ +L L +L L G DYT
Sbjct: 431 NDVLLYGGT---VYRNFFRKDREIEKYSLDRIERE----LQLDRKNLITLSYLLGSDYTD 483
Query: 232 GIPKVGLVTAMKYVVKNRTMEQ 253
G+ +G V A++ + K E+
Sbjct: 484 GVKGIGPVKALEAIRKGSVGEE 505
>SPAC12G12.16c [L] KOG2519 5'-3' exonuclease
Length = 496
Score = 51.2 bits (121), Expect = 5e-06
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 133 VIEYLQMNSIPYVVAPY--EADAQMVYLEKQGLVQGIISEDSDLLVFGCTRL--ITKLND 188
+ E L++ IP +P EA+A + + L + ++D+D+L+ G + + LND
Sbjct: 281 IFEILKILGIPASFSPIGVEAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLND 340
Query: 189 NAEC---IEIDRRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDYTSGIPKVGLVTAMKYV 245
N I R+ + LN LT D + + G D+TS IPK+G V A+K +
Sbjct: 341 NFHLPLQIMDPRKIAQELN--------LTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLI 392
Query: 246 VKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQFQRVWCPLNERLVT-LNAIPNEL 304
++ A+ E K +P + +++ A F P N L + ++ IP E
Sbjct: 393 RYYGNAFDVLKALNVEEKYIIPTDYIKKFLTAKKLF----TDLPSNNELFSFIHNIPKEF 448
Query: 305 LN 306
L+
Sbjct: 449 LH 450
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,626,468
Number of Sequences: 60738
Number of extensions: 1193219
Number of successful extensions: 3344
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3271
Number of HSP's gapped (non-prelim): 35
length of query: 671
length of database: 30,389,216
effective HSP length: 113
effective length of query: 558
effective length of database: 23,525,822
effective search space: 13127408676
effective search space used: 13127408676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)