ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4344 suspect: HSP K KOG2588 Transcription Predicted DNA-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4344 1489864  1492686 941  
         (941 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 [K] KOG2588 Predicted DNA-binding protein                 110   1e-23
YOR032c [K] KOG2588 Predicted DNA-binding protein                     102   4e-21
SPBC354.05c [K] KOG2588 Predicted DNA-binding protein                  74   8e-13
YOR344c [K] KOG2588 Predicted DNA-binding protein                      60   2e-08

>SPBC19C2.09 [K] KOG2588 Predicted DNA-binding protein
          Length = 900

 Score =  110 bits (275), Expect = 1e-23
 Identities = 82/231 (35%), Positives = 118/231 (50%), Gaps = 25/231 (10%)

Query: 320 GKVGKPKKERTSHNVIEKKYRTNINNKIVQLKEIIPSLCVTMKREEGIPVTELDHLRLDG 379
           G  GKPKK  T+HN+IEK+YRTN+N++I +L++ +PSL        G     LD   L G
Sbjct: 255 GPGGKPKK--TAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCG---NSLDDEDLGG 309

Query: 380 LQPAKKLNKASILVKTIEYIQHLENHVERLKLENEQLKQGQTFSTPLSV---RNNSTSES 436
           L PA+KLNK +IL K  EYI+HLE   + L+  N+QL     F    S+    N++ + +
Sbjct: 310 LTPARKLNKGTILAKATEYIRHLEAKNKELQKTNKQLSDRLAFYEDPSMAPPSNDTRAVN 369

Query: 437 SNGHQSSSDTTPHYHSGANVSNAYPTDVNASSSFRNKMLLDGLAMTMGANCFNGDSSDFQ 496
           S    SSSD + H  S  N++    T    ++  R    L+G+      N F  DSS  Q
Sbjct: 370 SVNVVSSSDYSVHQSSRPNLTQRAFTSPTLNTMGRT--ALNGMVGLGLFNYFGNDSS--Q 425

Query: 497 TVRGLMAMPVFHYSPMNGFTVSNSNGNINVFSSFLSLFRLGAFFFIIFYLV 547
           +V GL A+P F  SP  G  + N             + ++G     +FYL+
Sbjct: 426 SVYGLFALPPFLMSPFTGTVLFN-------------MLKIGVVLLGLFYLL 463


>YOR032c [K] KOG2588 Predicted DNA-binding protein
          Length = 434

 Score =  102 bits (253), Expect = 4e-21
 Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)

Query: 321 KVGKPKKERTSHNVIEKKYRTNINNKIVQLKEIIPSLCVTMKREEGIPVTELDHLRLDGL 380
           ++ + +  R SHN+IEKKYR+NIN+KI QL+  +P+L V  K+   +P+T  D   LDGL
Sbjct: 260 RITRVRTGRVSHNIIEKKYRSNINDKIEQLRRTVPTLRVAYKKCNDLPITSRDLADLDGL 319

Query: 381 QPAKKLNKASILVKTIEYIQHLENHVERLKLENEQLKQGQTFS-TPLSVRNNSTSESSNG 439
           +PA KLNKASIL K+IEYI HLE    +L L N+ L      S   L+  +   S++S+ 
Sbjct: 320 EPATKLNKASILTKSIEYICHLERKCLQLSLANQHLSNDTRDSFVHLTEPSQPLSDNSSS 379

Query: 440 HQSSSDT 446
            Q    T
Sbjct: 380 EQVQKQT 386


>SPBC354.05c [K] KOG2588 Predicted DNA-binding protein
          Length = 793

 Score = 74.3 bits (181), Expect = 8e-13
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 20/143 (13%)

Query: 290 PSSSPAES--------NDSRS---SHGTIGVGSYGN---GTSANGKVGKPKKERTSHNVI 335
           PS SP+ S        NDS S   S  T  + S G    G S   +   P  +R++HN+I
Sbjct: 375 PSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNGVEPVGLSTQEQNLSPLSKRSAHNMI 434

Query: 336 EKKYRTNINNKIVQLKEIIPSLCVTMKREEGIPVTELDHLRLDGLQPAKKLNKASILVKT 395
           EK+YR+N+N+KI +L++ +P+L        G   T  D L+   +  ++KLNKA+IL K 
Sbjct: 435 EKRYRSNLNDKIAELRDAVPTL------RSGYNSTTADELKGTYVPLSRKLNKATILSKA 488

Query: 396 IEYIQHLENHVERLKLENEQLKQ 418
            EYI+ L++  ++L  EN+ L++
Sbjct: 489 TEYIKSLQSKNKKLIEENKILQK 511


>YOR344c [K] KOG2588 Predicted DNA-binding protein
          Length = 291

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 23/113 (20%)

Query: 328 ERTSHNVIEKKYRTNINNKIVQLKEIIPSLCVTMKR-EEGIPVTELDHLRLDGLQPA--- 383
           ++ +HN IEK+YR NIN KI +L++IIP +       E G  V + D    DG + A   
Sbjct: 181 QKQAHNKIEKRYRININTKIARLQQIIPWVASEQTAFEVGDSVKKQDE---DGAETAATT 237

Query: 384 ---------KKLNKASILVKTIEYIQHLENH-------VERLKLENEQLKQGQ 420
                     KLNK+ IL K ++YI +L+N+       V+RLK E + LKQ Q
Sbjct: 238 PLPSAAATSTKLNKSMILEKAVDYILYLQNNERLYEMEVQRLKSEIDTLKQDQ 290


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,133,787
Number of Sequences: 60738
Number of extensions: 2034904
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6377
Number of HSP's gapped (non-prelim): 5
length of query: 941
length of database: 30,389,216
effective HSP length: 116
effective length of query: 825
effective length of database: 23,343,608
effective search space: 19258476600
effective search space used: 19258476600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)