ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4395 suspect: LH MU KOG4444 Cell wall/membrane/envelope biogenesis Peroxisomal assembly protein PEX3
r_klactV4395 suspect: LH MU KOG4444 Intracellular trafficking, secretion, and vesicular transport Peroxisomal assembly protein PEX3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4395 1510190 1508742 -483
(483 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR329c [MU] KOG4444 Peroxisomal assembly protein PEX3 295 1e-79
>YDR329c [MU] KOG4444 Peroxisomal assembly protein PEX3
Length = 441
Score = 295 bits (755), Expect = 1e-79
Identities = 185/486 (38%), Positives = 260/486 (53%), Gaps = 65/486 (13%)
Query: 4 NRSLVQRHRKKFVVSSVLFATLFATCAITVYFSKRWLYKQHLKMTEQRFVKEQIKRRFVQ 63
+RSL+QRHR K ++S A LF T ++ V+F KRWLYKQ L++TEQ F+KEQIKRRF Q
Sbjct: 7 SRSLLQRHRGKVLISLTGIAALFTTGSVVVFFVKRWLYKQQLRITEQHFIKEQIKRRFEQ 66
Query: 64 TQQDSLYTLYELMPVMTLVLAK-DFDLDSIVEAXXXXXXXXXXXXXEIAGNELENEGLSS 122
TQ+DSLYT+YEL+PV +VL + D +LDSIV L
Sbjct: 67 TQEDSLYTIYELLPVWRMVLNENDLNLDSIVTQ------------------------LKD 102
Query: 123 GMSAMTPAPSVSAKSPQSADXXXXXXXXXXXXAELWDDXXXXXXXXXXXXXXXXXXXXXX 182
+ +T AKS +S + AELW++
Sbjct: 103 QKNQLT-----RAKSSESRESSPLKSK-----AELWNELELKSLIKLVTVTYTVSSLILL 152
Query: 183 XXXXXXXXARREYLDTAINSAMEKEREKKANQYSVLSWFSSWITEKSNNLPSEKADPRNS 242
R EYLD+AI M++E K Q +W +SW ++ P +KAD
Sbjct: 153 TRLQLNILTRNEYLDSAIKLTMQQENCNKL-QNRFYNWVTSWWSD-----PEDKAD---- 202
Query: 243 DGTIDTDTRSIASTANPEKSRYVNEQAFLSLSWWLLNRGYLQYKSIIEQLVKEEFQNSNP 302
D + + + Y+NEQAFLSLSWW+LN+G+L Y II ++ EF +P
Sbjct: 203 ----DAMVMAAKKSKKEGQEVYINEQAFLSLSWWILNKGWLSYNEIITNQIEIEFDGIHP 258
Query: 303 RDIMTMDEFSGKISKIFVTTNKQFFQQPQSNEMFISCLLPEPNL-ERFVLQQTLEQDALK 361
RD +T++EFS +++ IF TN Q FQ Q+N S LLP+ + + F+L QTL+ DAL
Sbjct: 259 RDTLTLEEFSSRLTNIFRNTNSQIFQ--QNNNNLTSILLPKDSSGQEFLLSQTLDADALT 316
Query: 362 VLYEDNLLLKQLVQETNKCLQSPGTWIVLESLIDETFHTIMEQIEDNVNSKSKPKSNDDD 421
+ + L+ QLV E +C++S T IVLESLI+E+FH IM ++ +K KP D
Sbjct: 317 SFHSNTLVFNQLVNELTQCIESTATSIVLESLINESFHFIMNKVGIKTIAKKKPGQED-- 374
Query: 422 TKVVDISKNSYQIALFSIATKDCTNEMLKAGLVSMN----NKFLQKLHSISALDDLSACV 477
+ YQ+A+F+++ KDC EML+ S + N++L L S+ LDDLSA V
Sbjct: 375 -------QQQYQMAVFAMSMKDCCQEMLQTTAGSSHSGSVNEYLATLDSVQPLDDLSASV 427
Query: 478 YSNFGL 483
YSNFG+
Sbjct: 428 YSNFGV 433
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,880,678
Number of Sequences: 60738
Number of extensions: 957918
Number of successful extensions: 3184
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3178
Number of HSP's gapped (non-prelim): 2
length of query: 483
length of database: 30,389,216
effective HSP length: 110
effective length of query: 373
effective length of database: 23,708,036
effective search space: 8843097428
effective search space used: 8843097428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)