ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV4404    suspect: LH   L     KOG4835  Replication, recombination and repair                          DNA-binding protein C1D involved in regulation of double-strand break repair

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4404 1511603  1512133 177  
         (177 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR081w [L] KOG4835 DNA-binding protein C1D involved in regulati...   117   8e-27

>YHR081w [L] KOG4835 DNA-binding protein C1D involved in regulation of
           double-strand break repair
          Length = 184

 Score =  117 bits (293), Expect = 8e-27
 Identities = 65/164 (39%), Positives = 86/164 (51%), Gaps = 7/164 (4%)

Query: 1   MEDTKKIKPYISYLNKQVEQLSGEINKLTXXXXXXXXXXXXXXXXXXXXXNKYAYVLSSL 60
           MED +KIKPY+   +K +++L  EI KLT                     N+YAYVLSSL
Sbjct: 1   MEDIEKIKPYVRSFSKALDELKPEIEKLTSKSLDEQLLLLSDERAKLELINRYAYVLSSL 60

Query: 61  CFSYMKVLNIKDLSPIMAELARCKSYMDKSKQLXXXXXXXXXXXXXXXXXXXRVLQSALG 120
            F+ MKVL +KD+SPI+ EL R KSYMDK+KQ                     ++ + L 
Sbjct: 61  MFANMKVLGVKDMSPILGELKRVKSYMDKAKQYDNRITKSNEKSQAEQEKAKNIISNVLD 120

Query: 121 GGK--MEPAISKVNFQGKHTKFSTEASTTSTDKDGLANRVVDGT 162
           G K   EP+IS+ NFQGKHTKF  +    ST       +++D T
Sbjct: 121 GNKNQFEPSISRSNFQGKHTKFENDELAEST-----TTKIIDST 159


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,303,196
Number of Sequences: 60738
Number of extensions: 145947
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 1
length of query: 177
length of database: 30,389,216
effective HSP length: 99
effective length of query: 78
effective length of database: 24,376,154
effective search space: 1901340012
effective search space used: 1901340012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)