ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4432 suspect: Pn A KOG0340 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4432 1519323 1521392 690
(690 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
7303950 [A] KOG0340 ATP-dependent RNA helicase 63 2e-09
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 62 2e-09
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 59 2e-08
YOR046c [A] KOG0332 ATP-dependent RNA helicase 58 6e-08
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 58 6e-08
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 58 6e-08
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 57 9e-08
YGL078c [A] KOG0331 ATP-dependent RNA helicase 56 2e-07
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 55 3e-07
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 55 3e-07
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 54 1e-06
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 51 7e-06
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 62.8 bits (151), Expect = 2e-09
Identities = 101/482 (20%), Positives = 186/482 (37%), Gaps = 61/482 (12%)
Query: 63 KCVDAVTQGKMRIGVSLATGGGKTVIFS-NLLDRFRSLGAHSSRAALILVHRRELAMQAA 121
KC+ A+ G+ IG + TG GKT F+ +L+R S AL+L ELA Q +
Sbjct: 36 KCIPAILAGQDCIGAA-KTGSGKTFAFALPILERLSEEPV--SHFALVLTPTHELAYQIS 92
Query: 122 STISKFMPDLNVQM--------EMGKLHANLEEADVVI---GSVLTMVRRLEEYPPDSID 170
+ V++ +M + ++ +V+ G + + + + D++
Sbjct: 93 EQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLK 152
Query: 171 LIVIDEAHHAVADSYVKVLAHFNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKG 230
+V+DEA + + + L+ P TR + SA M + I
Sbjct: 153 YLVVDEADRMLNGDFDESLSIIERCLPKTRQNLF-------------FSATMKDFIKESS 199
Query: 231 ILEMIDE--NWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLH 288
I + + W + TV+ +D + + D + + + +E NE
Sbjct: 200 IFPIASDCFEWSQDSDVATVET-LDQRYLLCADYDRDMVLIEALRKYREENENA------ 252
Query: 289 KKKLHNLKSTLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQV 348
+ ++F +C+ L T +N I+ + G R ER + +S FK+ +I+
Sbjct: 253 --------NVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRT 304
Query: 349 LMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSSSKVG 408
L+ + G DIP+V+ V+ ++ + +GR R I F ++
Sbjct: 305 LIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL- 363
Query: 409 VISVPTLAGI-DDYDANLDEMAMDE--INSIRQEIEEKRLQQEMIQRETEAKEQEQKNHY 465
LA I ++ + L E +D+ + I ++ R + EM + E+ Q
Sbjct: 364 ------LAAIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRR 417
Query: 466 RNIVL---DSDSIELTLTNFEDFKSFCESMGTTDYSKLSPAAKE--ARLLADSKFPWVPV 520
+ ++ D D +E L + E PAA E LL D +F V
Sbjct: 418 KTWIMEGKDPDQME-ALYRKKQKDKLREIRRKRKLQHAEPAASEEGKALLQDERFKSVDS 476
Query: 521 SR 522
+R
Sbjct: 477 AR 478
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 62.4 bits (150), Expect = 2e-09
Identities = 92/388 (23%), Positives = 156/388 (39%), Gaps = 67/388 (17%)
Query: 63 KCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVHRRELAMQAAS 122
+ + + +G+ I S +G GKT FS + + + ++A LIL RELA+Q
Sbjct: 67 RAIKQIIKGRDVIAQS-QSGTGKTATFSISVLQCLDIQVRETQA-LILAPTRELAVQIQK 124
Query: 123 TISKFMPDLNVQME-------MGKLHANLEEADVVI----GSVLTMVRRLEEYPPDSIDL 171
+ +NVQ +G+ L+ V+ G V M+RR +I +
Sbjct: 125 GLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKM 183
Query: 172 IVIDEAHHAVADSYVKVLAH-FNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKG 230
+V+DEA + + + + + PAT+V +I + E
Sbjct: 184 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE------------------- 224
Query: 231 ILEMIDENWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKK 290
ILEM + KF T D ++ + LEG+ + E E +T
Sbjct: 225 ILEMTN-------KFMT-----DPIRILVKRDELTLEGIKQFFVAVEREEWKFDT----- 267
Query: 291 KLHNLKSTLLFAVDVAHCKT------LFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNG 344
L +L TL V C T L + + A + G ER+SI+ +F++G
Sbjct: 268 -LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 326
Query: 345 KIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSS 404
+VL++ ++ G D+P V ++ +R L + IGR R I+FV +
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG---VAINFVKN 383
Query: 405 SKVGVISVPTLAGIDD-YDANLDEMAMD 431
+ + L I+ Y +DEM M+
Sbjct: 384 DDIRI-----LRDIEQYYSTQIDEMPMN 406
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 58.9 bits (141), Expect = 2e-08
Identities = 85/364 (23%), Positives = 144/364 (39%), Gaps = 54/364 (14%)
Query: 81 TGGGKTVIFSNLLDRFRSLGAHSSRAALILVHRRELAMQAASTISKFMPDLNVQM----- 135
+G GKT FS + + L ++A LIL RELA+Q + + +NVQ
Sbjct: 67 SGTGKTATFSIGILQSIDLSVRDTQA-LILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 136 ------EMGKLHANLEEADVVIGSVLTMVRRLEEYPPDSIDLIVIDEAHHAVADSYVKVL 189
++ KL G V M+RR ++ ++++DEA + + + +
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKEQI 184
Query: 190 AH-FNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLCEGKFTTV 248
+ P T+V V+ SAT + +LEM + KFTT
Sbjct: 185 YDIYRYLPPGTQVVVV--SATLPQ-----------------DVLEMTN-------KFTTN 218
Query: 249 DVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAHC 308
V + + + + LEGL + E E +T + ++F
Sbjct: 219 PVRILVKR-----DELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKV 273
Query: 309 KTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCVL 368
L + + A + G+ ERD+I+ DF+ G +VL+ I+ G D+ V V+
Sbjct: 274 DWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVI 333
Query: 369 LCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSSSKVGVISVPTLAGIDDYDAN-LDE 427
+R + IGR R I+FV++ V + L I+ Y + +DE
Sbjct: 334 NYDLPANRENYIHRIGRSGRFGRKG---VAINFVTNEDVRI-----LRDIEQYYSTVIDE 385
Query: 428 MAMD 431
M M+
Sbjct: 386 MPMN 389
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 57.8 bits (138), Expect = 6e-08
Identities = 76/301 (25%), Positives = 127/301 (41%), Gaps = 50/301 (16%)
Query: 81 TGGGKTVIFS-NLLDRFRSLGAHSSRAALILVHRRELAMQAASTIS---KFMPDLNVQME 136
+G GKT FS +L R A S A+ L RELA Q + KF + +
Sbjct: 140 SGTGKTAAFSLTMLTRVNPEDA--SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV 197
Query: 137 MGKLHANLE-EADVVIGS---VLTMVRRLEEYPPDSIDLIVIDEAHH-----AVADSYVK 187
N + A V++G+ VL ++RR + I + V+DEA + + D ++
Sbjct: 198 PDSFEKNKQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 256
Query: 188 VLAHFNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLCEGKFTT 247
V DT ++ FSATF AD A+ +I+ + LE+ T
Sbjct: 257 VKRFLPKDTQ-----LVLFSATF--AD--AVRQYAKKIVPNANTLEL-----------QT 296
Query: 248 VDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAH 307
+V VD +K + D + N + +++ Y L + S+++F
Sbjct: 297 NEVNVDA--IKQLYMDCK--------NEADKFDVLTELY----GLMTIGSSIIFVATKKT 342
Query: 308 CKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCV 367
L+ ++ G + G +T ERD ++ DF+ G+ +VL+ + G DIP V V
Sbjct: 343 ANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMV 402
Query: 368 L 368
+
Sbjct: 403 V 403
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 57.8 bits (138), Expect = 6e-08
Identities = 76/349 (21%), Positives = 142/349 (39%), Gaps = 30/349 (8%)
Query: 63 KCVDAVTQGKMRIGVSLATGGGKTVIFS-NLLDRFRSLGAHSSRAALILVHRRELAMQAA 121
K + + +G+ +G++ TG GKT F +++ +S A+S+ ALIL RELA+Q
Sbjct: 98 KTIPLLLEGRDVVGMA-RTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTV 156
Query: 122 STISKFMPDLNVQMEMGKLHANLEE--------ADVVIGSV-----LTMVRRLEEYPPDS 168
+ F +++ +LEE D+V+ + L + +LE S
Sbjct: 157 KVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLE---LSS 213
Query: 169 IDLIVIDEAHHAVADSYVKVLAHFNADTPATRVPVIGFSATFERA-DKRALSAVMDEIIY 227
I+ +V DEA + L P +R ++ FSAT R A + + D ++
Sbjct: 214 IEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLL-FSATLPRTLVDFAKAGLQDPVLV 272
Query: 228 HKGILEMIDENWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEI------ 281
+ + + + F +V + + + D L + +EI +
Sbjct: 273 RLDVESKVSAD--LQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKR 330
Query: 282 --VLNTYLHKKKLHNLKSTLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVS 339
L L + + STL+F H + + + AG + + G R + ++
Sbjct: 331 KRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEIN 390
Query: 340 DFKNGKIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLR 388
+F+ GK +L+ + + G DIP + V+ + V +GR R
Sbjct: 391 NFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTAR 439
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 57.8 bits (138), Expect = 6e-08
Identities = 74/324 (22%), Positives = 125/324 (37%), Gaps = 45/324 (13%)
Query: 78 SLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVHRRELAMQAASTISKFMPDLNVQMEM 137
S TG GKT+ FS + A+ ALI+ RELA Q + K ++ M
Sbjct: 100 SAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM 159
Query: 138 GKLHA---------NLEEADVVIGSVLTMVRRLEEYPPD----SIDLIVIDEAHHAVADS 184
A + ++ D+++ + ++ L++ PP S++ +V+DE+ D
Sbjct: 160 IHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 219
Query: 185 ---YVKVLAHFNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLC 241
+ LA + +V FSATF ++ +D +I
Sbjct: 220 KTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI--------------- 264
Query: 242 EGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLF 301
+V +G S V++V + G E +++ L KK + L+F
Sbjct: 265 -----SVSIGARNSAVETVEQELLFVG-------SETGKLLAMRELVKKGFN--PPVLVF 310
Query: 302 AVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDI 361
+ K LF GIN + + +RD+ V F+ GKI VL+ + G D
Sbjct: 311 VQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 370
Query: 362 PNVDCVLLCRPTKSRSLLVQMIGR 385
V+ V+ S + IGR
Sbjct: 371 KGVNLVINYDFPTSSVEYIHRIGR 394
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 57.0 bits (136), Expect = 9e-08
Identities = 86/364 (23%), Positives = 135/364 (36%), Gaps = 54/364 (14%)
Query: 81 TGGGKTVIFSNLLDRFRSLGAHSSRA-ALILVHRRELAMQAASTISKFMPDLNVQME--- 136
+G GKT FS + +SL ALIL RELA+Q + +NVQ
Sbjct: 72 SGTGKTATFS--ISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACI 129
Query: 137 ----MGKLHANLEEADVVI----GSVLTMVRRLEEYPPDSIDLIVIDEAHHAVADSYVKV 188
+G+ L+ V+ G V M+RR +I L+V+DEA + + +
Sbjct: 130 GGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQ 188
Query: 189 LAHFNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLCEGKFTTV 248
L P V+ SAT ILEM KF T
Sbjct: 189 LYDIYRYLPPG-AQVVLLSATLPHE-----------------ILEMTS-------KFMT- 222
Query: 249 DVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAHC 308
D ++ + LEG+ + + E +T + + +LF
Sbjct: 223 ----DPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKV 278
Query: 309 KTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCVL 368
L + A + G +RD ++ +F+ G +VL++ ++ G D+P V V+
Sbjct: 279 DWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVI 338
Query: 369 LCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSSSKVGVISVPTLAGIDD-YDANLDE 427
+R L + IGR R I+FV V + L I+ Y +DE
Sbjct: 339 NYDLPNNRELYIHRIGRSGRFGRKG---VAINFVKQDDVRI-----LRDIEQYYSTQIDE 390
Query: 428 MAMD 431
M M+
Sbjct: 391 MPMN 394
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 56.2 bits (134), Expect = 2e-07
Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 42/312 (13%)
Query: 71 GKMRIGVSLATGGGKTVIF-----SNLLDRFRSLGAHSSRAALILVHRRELAMQAASTIS 125
GK +GV+ TG GKT F S+L++ + G L++ RELA Q +
Sbjct: 149 GKDVVGVA-ETGSGKTFAFGVPAISHLMNDQKKRGIQ----VLVISPTRELASQIYDNLI 203
Query: 126 KFMPDLNVQ-------MEMGKLHANLEEADVVIGSVLTMVRRLEEYPPD--SIDLIVIDE 176
+ +Q + + L+++ VV+ + ++ L+E D ++ +V+DE
Sbjct: 204 VLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDE 263
Query: 177 AHHAVADSYVKVLAHFNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMID 236
A + + + + + +T A++ + F+AT+ + + S M+ I + + +
Sbjct: 264 ADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIK----VSIGN 319
Query: 237 ENWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLK 296
+ L K T V V + K LE L K + + NE VL L+KK+ ++
Sbjct: 320 TDQLTANKRITQIVEVVDPRGKERKL---LELLKKYHSGPKKNEKVLIFALYKKEAARVE 376
Query: 297 STLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFT 356
L + G N + G +R +++FK+GK +L+ +
Sbjct: 377 RNLKYN----------------GYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAA 420
Query: 357 EGTDIPNVDCVL 368
G DIPNV V+
Sbjct: 421 RGLDIPNVKTVI 432
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 55.5 bits (132), Expect = 3e-07
Identities = 91/426 (21%), Positives = 165/426 (38%), Gaps = 60/426 (14%)
Query: 81 TGGGKTVIFS----NLLDRFRSLGAHSSRA---ALILVHRRELAMQAAS---TISKFMPD 130
TG GKTV F ++ + + R AL++ RELA QAA+ T+ K+ P
Sbjct: 100 TGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPS 159
Query: 131 LNVQMEMGKLHANLEE-------ADVVIGSVLTMVRRLEEYPP-----DSIDLIVIDEAH 178
+ VQ+ +G LE+ +++ + + +E P + ++V+DEA
Sbjct: 160 IGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEAD 219
Query: 179 HAVADSYVKVLAHFNADTPATRVPVIGFSATF-ERADKRALSAVMDEIIYHKGILEMIDE 237
H + + K + + P R + FSAT E + L A+ + H+ +
Sbjct: 220 HLLDMGFRKDIERIISAVPKERQTFL-FSATVPEEVRQICLVALRRD---HEFV------ 269
Query: 238 NWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLK- 296
N + EG T + + S++ F L L T L + + N+
Sbjct: 270 NCVHEGTIETHQQVRQMHMIASLDRHFSL----------------LYTLLREHIMGNVDY 313
Query: 297 STLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFT 356
++F K + +N + + + R + ++F+ K +L+ +
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 357 EGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIID-----FVSSSKVGVIS 411
G D P+V VL K R + +GR RK E ++ F+SS K I+
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSLKDLPIT 433
Query: 412 VPTLAGIDDYDANLDEMAMDEINSIRQEIEEKRL-----QQEMIQRETEAKEQEQKNHYR 466
L ID + A+ + +E + Q+MI R+ + + R
Sbjct: 434 KSPLPSIDPETVKKVQKALCHVEMRNKEAAYQAWLGYYNSQKMIGRDKDRLVELANEFSR 493
Query: 467 NIVLDS 472
++ LD+
Sbjct: 494 SMGLDN 499
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 55.5 bits (132), Expect = 3e-07
Identities = 101/493 (20%), Positives = 187/493 (37%), Gaps = 84/493 (17%)
Query: 23 GNVCAATATAVRHFGNXXXXXXXXXXXXPLLRDYQQDCINKCVDAVTQGKMRIGVSLATG 82
G V AT A++ G PLL+ G+ +G + TG
Sbjct: 175 GAVSEATLRAIKEMGFTEMTEIQSKSLTPLLK----------------GRDLVGAA-QTG 217
Query: 83 GGKTVIFS----NLLDRFRSLGAHSSRAALILVHRRELAMQAASTISKFMPD-------- 130
GKT+ F L+++ R + + + +I+ REL+MQ + + M
Sbjct: 218 SGKTLAFLIPAVELINKLRFMPRNGT-GVIIISPTRELSMQTFGVLKELMAHHHHTYGLV 276
Query: 131 ---LNVQMEMGKLHANLEEADVVIGSVLTMVRRLEEYPPDSIDLIVIDEAHHAVADSYVK 187
N Q+E KL + G +L ++ ++ ++ ++IDE + + +
Sbjct: 277 MGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEE 336
Query: 188 VLAHFNADTPATRVPVIGFSATFERADKRALS--AVMDEIIYHKGILEMIDENWLCEGKF 245
L P R ++ FSAT + A ALS A+ E IY
Sbjct: 337 ELKQIINLLPKRRQTML-FSAT-QTARIEALSKLALKSEPIY------------------ 376
Query: 246 TTVDVGVDLSKVKSVNSDFQLEGLSK--VMNTKEINEIVLNTYLHKKKLHNLKSTLLFAV 303
VGV ++ + ++GL + ++ E +VL T+L K + K ++F
Sbjct: 377 ----VGVHDNQDTAT-----VDGLEQGYIVCPSEKRLLVLFTFLKKNRK---KKVMVFFS 424
Query: 304 DVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDIPN 363
K + F + + GK + +R + F N + +L+ + G DIP
Sbjct: 425 SCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQ 484
Query: 364 VDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSSSKVGVISVPTLAGIDDYDA 423
VD ++ P + +GR R + H ++ + ++G + A
Sbjct: 485 VDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLL--MRPEELGFLRYLKAA------- 535
Query: 424 NLDEMAMDEINSIRQEIEEKRLQQEMIQRETEAKEQEQKNHYRNIVLDSDSIELTL---T 480
++ ++E Q+I + +LQ E + + Q K +++ V DS +L
Sbjct: 536 ---KVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNV 592
Query: 481 NFEDFKSFCESMG 493
N D ++ +S G
Sbjct: 593 NTLDLQAVAKSFG 605
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 53.5 bits (127), Expect = 1e-06
Identities = 89/371 (23%), Positives = 141/371 (37%), Gaps = 68/371 (18%)
Query: 81 TGGGKTVIFSNLLDRFRSLGAHSSRA-ALILVHRRELAMQAASTISKFMPDLNVQME--- 136
+G GKT FS + +SL L L RELA+Q I +NVQ
Sbjct: 72 SGTGKTATFS--ISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCI 129
Query: 137 ----MGKLHANLEEADVVI----GSVLTMVRRLEEYPPDSIDLIVIDEAHHAVADSYVKV 188
+G+ L+ ++ G V M++R +I ++V+DEA + + +
Sbjct: 130 GGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKR-RVLRTRAIKMLVLDEADEMLNKGFKEQ 188
Query: 189 LAH-FNADTPATRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLCEGKFTT 247
+ + PAT+V +I + E ILEM KF T
Sbjct: 189 IYDVYRYLPPATQVVLISATLPHE-------------------ILEMTS-------KFMT 222
Query: 248 VDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAH 307
D ++ + LEG+ + E E +T L +L TL V
Sbjct: 223 -----DPIRILVKRDELTLEGIKQFFVAVEREEWKFDT------LCDLYDTLTITQAVIF 271
Query: 308 CKT------LFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEGTDI 361
C T L + + A + G ERD I+ +F+ G+ +VL+ ++ G D+
Sbjct: 272 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDV 331
Query: 362 PNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIIDFVSSSKVGVISVPTLAGIDD- 420
V V+ +R L + IGR R I+FV S + + L I+
Sbjct: 332 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKG---VAINFVKSDDIRI-----LRDIEQY 383
Query: 421 YDANLDEMAMD 431
Y +DEM M+
Sbjct: 384 YSTQIDEMPMN 394
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 50.8 bits (120), Expect = 7e-06
Identities = 91/440 (20%), Positives = 166/440 (37%), Gaps = 63/440 (14%)
Query: 68 VTQGKMRIGVSLATGGGKTVIFSNLLDRFRSL-----GAHSSRA----ALILVHRRELAM 118
+ QGK + TG GKTV F LL ++ + SR L++ RELA
Sbjct: 393 ILQGK-DVLAKAKTGTGKTVAF--LLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELAS 449
Query: 119 QAAS---TISKFMPDLNVQMEMGKLHANLEEADVVIGSVLTMVR---RLEEYPPDS---- 168
QAA+ T+ K+ P + VQ+ +G E+ + +V RL+++ ++
Sbjct: 450 QAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFA 509
Query: 169 -----IDLIVIDEAHHAVADSYVKVLAHFNADTPATRVPVIGFSATFERADKRALSAVMD 223
+ ++V+DEA H + + + + A P R + FSAT ++ +
Sbjct: 510 TRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFL-FSATVPEEVRQICHVALK 568
Query: 224 EIIYHKGILEMIDENWLCEGKFTTVDVGVDLSKVKSVNSDFQLEGLSKVMNTKEINEIVL 283
H+ I N + EG T + + S++ F L L
Sbjct: 569 RD--HEFI------NCVQEGSGETHQKVTQMYMIASLDRHFSL----------------L 604
Query: 284 NTYLHKKKLHNLK-STLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFK 342
+ L + N+ ++F + + +N + + + R + +F+
Sbjct: 605 HVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFR 664
Query: 343 NGKIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSKEHCQIID-- 400
K +L+ + G D P+V V+ R + +GR RK E ++
Sbjct: 665 KSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPW 724
Query: 401 ---FVSSSKVGVISVPTLAGIDDYDANLDEMAMDEINSIRQEIEEKR-----LQQEMIQR 452
F+SS K I+ L ID + + ++ +E + Q+MI R
Sbjct: 725 EEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIAR 784
Query: 453 ETEAKEQEQKNHYRNIVLDS 472
+T + R++ LDS
Sbjct: 785 DTTRLVELANEFSRSMGLDS 804
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,562,344
Number of Sequences: 60738
Number of extensions: 1532192
Number of successful extensions: 6931
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6923
Number of HSP's gapped (non-prelim): 14
length of query: 690
length of database: 30,389,216
effective HSP length: 113
effective length of query: 577
effective length of database: 23,525,822
effective search space: 13574399294
effective search space used: 13574399294
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)