ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4490 good R KOG0381 General function prediction only HMG box-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4490 1542238 1542972 245
(245 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL002c [R] KOG0381 HMG box-containing protein 159 4e-39
Hs4885421 [R] KOG0381 HMG box-containing protein 59 8e-09
YBR089c-a [R] KOG0381 HMG box-containing protein 53 3e-07
Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 53 3e-07
Hs4504425 [R] KOG0381 HMG box-containing protein 53 4e-07
Hs22055439 [R] KOG0381 HMG box-containing protein 53 4e-07
Hs11321591 [R] KOG0381 HMG box-containing protein 53 4e-07
SPBC28F2.11 [R] KOG0381 HMG box-containing protein 52 1e-06
7293212 [R] KOG0381 HMG box-containing protein 51 1e-06
Hs20546564 [R] KOG0381 HMG box-containing protein 50 3e-06
Hs20552486 [R] KOG0381 HMG box-containing protein 50 4e-06
At4g11080 [R] KOG0381 HMG box-containing protein 50 4e-06
YPR052c [R] KOG0381 HMG box-containing protein 49 8e-06
>YDL002c [R] KOG0381 HMG box-containing protein
Length = 203
Score = 159 bits (401), Expect = 4e-39
Identities = 78/158 (49%), Positives = 111/158 (69%), Gaps = 2/158 (1%)
Query: 23 VKNLTEENEALSLALHRTRLSVKRLRLEYGVLLERLESRVHADQSLKYDSPLPDLESFRK 82
++ L ++N L LA+ R+RLSVKRL+LEYGVLLERLESR+ D L + PLP L SF++
Sbjct: 10 LEELKDQNVVLGLAIQRSRLSVKRLKLEYGVLLERLESRIELDPELNCEDPLPTLASFKQ 69
Query: 83 SLLESMPARTXXXXXXXXXXXXPNLPKRPTNAYILFCEMNKDKVKEMNENTDMTRLMAEI 142
LL + P R PN+PKRPTNAY+L+CEMNK+++++ N + D+TR +AE
Sbjct: 70 ELL-TKPFRKSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIRQ-NGSLDVTRDLAEG 127
Query: 143 WNGLDEEAKKPYYDLYNEGRQKYEQEMSTYSKKKASQD 180
W L+E+ +KPYY LY+E R++Y+ EM Y+KK ++ D
Sbjct: 128 WKNLNEQDRKPYYKLYSEDRERYQMEMEIYNKKISNID 165
>Hs4885421 [R] KOG0381 HMG box-containing protein
Length = 200
Score = 58.5 bits (140), Expect = 8e-09
Identities = 25/74 (33%), Positives = 43/74 (57%), Gaps = 3/74 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKRP + + LFC + K+K N D+ + + E+WN L++ K+PY +
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 162 RQKYEQEMSTYSKK 175
++KYE++++ Y K
Sbjct: 150 KEKYEKDVADYKSK 163
>YBR089c-a [R] KOG0381 HMG box-containing protein
Length = 99
Score = 53.1 bits (126), Expect = 3e-07
Identities = 28/78 (35%), Positives = 42/78 (52%), Gaps = 7/78 (8%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENTDMT-----RLMAEIWNGLDEEAKKPYYDLYN 159
PN PKR +AY+ F N+D V+ +EN D+T R++ E W L E K+PY
Sbjct: 24 PNAPKRRLSAYMFFANENRDIVR--SENPDVTFGQVGRILGERWKALTAEEKQPYESKAQ 81
Query: 160 EGRQKYEQEMSTYSKKKA 177
+++YE E Y+ +A
Sbjct: 82 ADKKRYESEKELYNATRA 99
>Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 709
Score = 53.1 bits (126), Expect = 3e-07
Identities = 24/71 (33%), Positives = 42/71 (58%), Gaps = 3/71 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNEN---TDMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKRP +AY+L+ +++K+K + TD+++ EIW G+ +E K+ + +
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 162 RQKYEQEMSTY 172
R+ YE+ M Y
Sbjct: 604 RRDYEKAMKEY 614
>Hs4504425 [R] KOG0381 HMG box-containing protein
Length = 215
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKRP +A+ LFC + K+K + D+ + + E+WN + K+PY +
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 162 RQKYEQEMSTYSKK 175
++KYE++++ Y K
Sbjct: 152 KEKYEKDIAAYRAK 165
>Hs22055439 [R] KOG0381 HMG box-containing protein
Length = 168
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKRP +A+ LFC + K+K + D+ + + E+WN + K+PY +
Sbjct: 60 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 119
Query: 162 RQKYEQEMSTYSKK 175
++KYE++++ Y K
Sbjct: 120 KEKYEKDIAAYRAK 133
>Hs11321591 [R] KOG0381 HMG box-containing protein
Length = 209
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/78 (30%), Positives = 44/78 (55%), Gaps = 3/78 (3%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKRP +A+ LFC ++ K+K + D + + E+W+ + K+PY +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 162 RQKYEQEMSTYSKKKASQ 179
++KYE++++ Y K S+
Sbjct: 152 KEKYEKDIAAYRAKGKSE 169
>SPBC28F2.11 [R] KOG0381 HMG box-containing protein
Length = 310
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/77 (33%), Positives = 44/77 (56%), Gaps = 5/77 (6%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEM-----NENTDMTRLMAEIWNGLDEEAKKPYYDLYN 159
P PKRP +AY LF + + ++KE N+ ++ + M E W L E+ +K Y + +
Sbjct: 114 PAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEAS 173
Query: 160 EGRQKYEQEMSTYSKKK 176
+ R+ YE+EM+ Y+ K
Sbjct: 174 KLREAYEEEMAAYNASK 190
>7293212 [R] KOG0381 HMG box-containing protein
Length = 328
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNEN---TDMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN PKR +A+ FC ++KVK +N D+ + + W+ +D E K+ Y +
Sbjct: 203 PNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERD 262
Query: 162 RQKYEQEMSTY 172
+ +YE+EM+ Y
Sbjct: 263 KARYEREMTEY 273
>Hs20546564 [R] KOG0381 HMG box-containing protein
Length = 173
Score = 50.1 bits (118), Expect = 3e-06
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
P+ PKRP + + LF + K+K N D+ + + E+WN L++ K+PY +
Sbjct: 85 PSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKL 144
Query: 162 RQKYEQEMSTYSKKKASQD 180
++KYE++++ SK K D
Sbjct: 145 KEKYEKDVAD-SKSKGKFD 162
>Hs20552486 [R] KOG0381 HMG box-containing protein
Length = 211
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT---DMTRLMAEIWNGLDEEAKKPYYDLYNEG 161
PN KRP + + LFC K+K N DM + + E+W + K+PY +
Sbjct: 89 PNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITKAADL 148
Query: 162 RQKYEQEMSTYSKK 175
++KYE++++ Y K
Sbjct: 149 KEKYEKDVADYKSK 162
>At4g11080 [R] KOG0381 HMG box-containing protein
Length = 446
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENTDMTRLMAEI---WNGLDEEAKKPYYDLYNEG 161
PN PK+PT++Y LFC+ + V E + + + + A I W L EE K+ Y E
Sbjct: 369 PNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAEL 428
Query: 162 RQKYEQEMSTYSKKKAS 178
+ Y++E+ Y+K K S
Sbjct: 429 MEAYKKEVEEYNKTKTS 445
Score = 49.3 bits (116), Expect = 5e-06
Identities = 22/71 (30%), Positives = 40/71 (55%), Gaps = 3/71 (4%)
Query: 109 KRPTNAYILFCEMNKDKVKEMNENTDM---TRLMAEIWNGLDEEAKKPYYDLYNEGRQKY 165
KRP+ YIL+C+ N ++VK+ N D + ++ W G+ E KKPY + Y ++ Y
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAY 189
Query: 166 EQEMSTYSKKK 176
Q ++ +++
Sbjct: 190 LQVITKEKRER 200
Score = 48.9 bits (115), Expect = 6e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENT-DMTRLMAEIWNGLDEEAKKPYYDLYNEGRQ 163
P PK+P +AY+++ + +K N++ ++ ++ E W L EE K PY + + ++
Sbjct: 243 PLKPKQPISAYLIYANERRAALKGENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKE 302
Query: 164 KYEQEMSTYSKKKASQ 179
Y QEM Y + K +
Sbjct: 303 IYLQEMEGYKRTKEEE 318
>YPR052c [R] KOG0381 HMG box-containing protein
Length = 93
Score = 48.5 bits (114), Expect = 8e-06
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 105 PNLPKRPTNAYILFCEMNKDKVKEMNENTDMT-----RLMAEIWNGLDEEAKKPYYDLYN 159
PN PKR +AY+ F N+D V+ +EN D+T + + E W L E K+PY
Sbjct: 18 PNAPKRALSAYMFFANENRDIVR--SENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 160 EGRQKYEQEMSTYS 173
+++YE E Y+
Sbjct: 76 ADKKRYESEKELYN 89
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.307 0.126 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,243,388
Number of Sequences: 60738
Number of extensions: 417062
Number of successful extensions: 1412
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 20
length of query: 245
length of database: 30,389,216
effective HSP length: 104
effective length of query: 141
effective length of database: 24,072,464
effective search space: 3394217424
effective search space used: 3394217424
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)