ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4532 good K KOG3104 Transcription Mod5 protein sorting/negative effector of RNA Pol III synthesis
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4532 1558669 1557683 -329
(329 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR005c [K] KOG3104 Mod5 protein sorting/negative effector of RN... 251 1e-66
SPAC31G5.12c [K] KOG3104 Mod5 protein sorting/negative effector ... 105 9e-23
Hs14150013 [K] KOG3104 Mod5 protein sorting/negative effector of... 65 2e-10
At5g13240 [K] KOG3104 Mod5 protein sorting/negative effector of ... 56 8e-08
CE19378 [K] KOG3104 Mod5 protein sorting/negative effector of RN... 53 5e-07
>YDR005c [K] KOG3104 Mod5 protein sorting/negative effector of RNA Pol III
synthesis
Length = 395
Score = 251 bits (640), Expect = 1e-66
Identities = 146/300 (48%), Positives = 189/300 (62%), Gaps = 56/300 (18%)
Query: 21 KLNDQNLKEFVLSTDSTNFVXXXXXXXXXXXXXXXXXXGYLSSSSMESGPLGIASQRPSF 80
KLNDQNLKE V + DS G +SSSS++S +S+
Sbjct: 140 KLNDQNLKELVSNYDS----------------------GSMSSSSLDS-----SSKNDER 172
Query: 81 LRRTSSAGSIASNHTDTSKRRPSTSGSANEIQNTSYQQRRRSSVQGR-DNVNIGPFGPIN 139
+RR SS+ SI+S + S +SG+A N +RR+SS+ R N+++GPFGPIN
Sbjct: 173 IRRRSSS-SISSFKSGKSSNNNYSSGTATNNVN----KRRKSSINERPSNLSLGPFGPIN 227
Query: 140 ETASRRAFAYLIAILNASYPDHDFSSLEPTDFVKCTKKSFISKFENTLISLGKPPQEWIW 199
E +SR+ FAYLIAILNASYPDHDFSS+EPTDFVK + K+FISKFENTL SLG+ P+EW+W
Sbjct: 228 EPSSRKIFAYLIAILNASYPDHDFSSVEPTDFVKTSLKTFISKFENTLYSLGRQPEEWVW 287
Query: 200 ETINGHMDINDCAFYQYVPQKSFLEDEPGHLWSLMWFLFNKKRKRVAYVYLTACRLKGTP 259
E IN HM ++DC +QY P SFLEDEPG+LW+L+ FL+N+KRKRVAY+YL RL
Sbjct: 288 EVINSHMTLSDCVLFQYSPSNSFLEDEPGYLWNLIGFLYNRKRKRVAYLYLICSRL---- 343
Query: 260 SVGNSVILADDEDENSSKLESE----RKQRRKLTLDN-DNDFEGEYDLTYEENAIIDDDE 314
NSS E E +K + KL +D+ N++EGEYD TY+EN I D +
Sbjct: 344 --------------NSSTGEVEDALAKKPQGKLIIDDGSNEYEGEYDFTYDENVIDDKSD 389
>SPAC31G5.12c [K] KOG3104 Mod5 protein sorting/negative effector of RNA Pol III
synthesis
Length = 215
Score = 105 bits (262), Expect = 9e-23
Identities = 53/121 (43%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
Query: 134 PFGPINETASRRAFAYLIAILNASYPDHDFSSLEPTDFVKCTKKS-FISKFENTL--ISL 190
PFGP+++++SRR F Y++A LNASYPDHDFSSL+PTDF K S + +TL I
Sbjct: 52 PFGPLDQSSSRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPSLSRVVDSVNSTLNNIGR 111
Query: 191 GKPPQEWIWETINGHMDINDCAFYQYVPQK-SFLEDEPGHLWSLMWFLFNKKRKRVAYVY 249
G+ IWE I+ H++++DC+ Y Y P S + +W + +F FNK KR+ Y+
Sbjct: 112 GRLSVNGIWEIIDRHINLSDCSVYSYTPDSDSDPYGDDALIWGMSYFFFNKNMKRMLYLS 171
Query: 250 L 250
L
Sbjct: 172 L 172
>Hs14150013 [K] KOG3104 Mod5 protein sorting/negative effector of RNA Pol III
synthesis
Length = 256
Score = 64.7 bits (156), Expect = 2e-10
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 112 QNTSYQQRRRSSVQGRDNVNIGPFGPINETASRRAFAYLIAILNASY-PDHDFSSLEPTD 170
Q + R S QG + GP+++ SR+ YLIA LN S+ PD+DFS+ +
Sbjct: 63 QTSGLSPSRLSKSQGGEEE-----GPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHE 117
Query: 171 FVKCTKKSFISKFENTLISLG-----KPPQEWIWETINGHMDINDCAFYQYVPQKSFLED 225
F + S++ N + K + +W ++ + + +C Y Y P L+
Sbjct: 118 FSREPSLSWVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPD---LDS 174
Query: 226 EP----GHLWSLMWFLFNKKRKRVAYVYLTACRLKG---TPS-VGNSVILADDEDENSSK 277
+P G LWS +F +NK+ KR+ V+ + + G TPS GN + + E+E
Sbjct: 175 DPFGEDGSLWSFNYFFYNKRLKRI--VFFSCRSISGSTYTPSEAGNELDMELGEEE---- 228
Query: 278 LESERKQR 285
+E E + R
Sbjct: 229 VEEESRSR 236
>At5g13240 [K] KOG3104 Mod5 protein sorting/negative effector of RNA Pol III
synthesis
Length = 283
Score = 55.8 bits (133), Expect = 8e-08
Identities = 46/166 (27%), Positives = 75/166 (44%), Gaps = 30/166 (18%)
Query: 128 DNVNIGPFGPINETASRRAFAYLIAILNASYPDHDFSSLEPTDFV-KCTKKSFISKFENT 186
D + P + +SR+A YL+ L YPD+DFS+++ F + + +F F N
Sbjct: 120 DTDSSSPVDLLLSRSSRKALIYLVLTLYQMYPDYDFSAVKAHQFFSEESWDTFKQIFNNY 179
Query: 187 LISLGKPPQEW------------IWETINGHMDINDCAFYQYVPQKS---FLEDEPGHLW 231
+ K EW I++ ++ + + +C Y Y P + FLE+ G +W
Sbjct: 180 MFEASK---EWTERNEDGSLLEVIYKALDEVVKLAECEIYVYNPNPNADPFLEE--GAIW 234
Query: 232 SLMWFLFNKKRKRVAYVYLTACRLKGTPSVGNSVILAD----DEDE 273
S + +N+K KRVA R T ++ N L D +EDE
Sbjct: 235 SFCFLFYNRKLKRVA-----GFRFSCTSNLANDAFLTDSPPYEEDE 275
>CE19378 [K] KOG3104 Mod5 protein sorting/negative effector of RNA Pol III
synthesis
Length = 245
Score = 53.1 bits (126), Expect = 5e-07
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 138 INETASRRAFAYLIAILNASYPDHDFSSLEPTDFVKCTKKSFISKFEN----TLISLGKP 193
I ++ SR+ L +LN S+PDHDFS+ F S +S+ + T++
Sbjct: 102 IKDSISRKKLYDLTQVLNCSFPDHDFSNANSEAFA-LVNYSDLSRLVDMKLETIVRDYHV 160
Query: 194 PQEWIWETINGHMDINDCAFYQYVPQKSFLEDEP----GHLWSLMWFLFNKKRKRVAYVY 249
+E +W I+ + DC Y + KS ED+P G +W+L + +NK KR +
Sbjct: 161 RREELWGIIDEAIVPGDCQIYSF---KSQFEDDPFTEDGCIWALAFIFYNKGLKRFVLLT 217
Query: 250 LTACRLKGTPSVGNSVILADDEDENSSK 277
+ + S+ ++DE E K
Sbjct: 218 IRCLSKQADTSIEIFPDFSEDEAEPQEK 245
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,684,279
Number of Sequences: 60738
Number of extensions: 825153
Number of successful extensions: 3137
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3127
Number of HSP's gapped (non-prelim): 5
length of query: 329
length of database: 30,389,216
effective HSP length: 107
effective length of query: 222
effective length of database: 23,890,250
effective search space: 5303635500
effective search space used: 5303635500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)