ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4571 good DO KOG1493 Cell cycle control, cell division, chromosome partitioning Anaphase-promoting complex (APC), subunit 11
r_klactV4571 good DO KOG1493 Posttranslational modification, protein turnover, chaperones Anaphase-promoting complex (APC), subunit 11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4571 1571506 1571021 -162
(162 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL008w [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 124 6e-29
SPAC343.03 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 89 3e-18
7297435 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 82 3e-16
CE00978 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 79 3e-15
Hs18777675 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 78 6e-15
At3g05870 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11 76 2e-14
ECU01g1095 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 56 2e-08
YOL133w [O] KOG2930 SCF ubiquitin ligase Rbx1 component 52 3e-07
At3g42830 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 52 4e-07
SPAC23H4.18c [O] KOG2930 SCF ubiquitin ligase Rbx1 component 51 8e-07
Hs7657508 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 51 8e-07
CE06614 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 51 8e-07
7290070 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 51 8e-07
7291966 [O] KOG2930 SCF ubiquitin ligase Rbx1 component 49 3e-06
>YDL008w [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 165
Score = 124 bits (311), Expect = 6e-29
Identities = 58/150 (38%), Positives = 84/150 (55%), Gaps = 18/150 (12%)
Query: 1 MRIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCG 60
M++++ +V V W+W IP + + + + ++ VCG
Sbjct: 1 MKVKINEVHSVFAWSWHIPS--TSDEDAANNDPIGNDE----------------DEDVCG 42
Query: 61 ICRNRYDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCRQGFQLRP 120
ICR Y+ TCPSC +PG CP+V+GLC+HNFH HCI +WL T TSKGLCP+CRQ FQL+
Sbjct: 43 ICRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQTFQLQK 102
Query: 121 NVLINKMHHDEFQKLLMSVRQHNIPMGGGE 150
+ IN H +F +++ R+ I G E
Sbjct: 103 GLAINDAHVQKFVEIVSRRREEMIEEGVAE 132
>SPAC343.03 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 94
Score = 88.6 bits (218), Expect = 3e-18
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 35/116 (30%)
Query: 1 MRIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCG 60
M++++ ++ W WD PKD VCG
Sbjct: 1 MKVKILRYHAIANWTWDTPKD-----------------------------------DVCG 25
Query: 61 ICRNRYDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCRQGF 116
ICR +D CP C PG CPIV G C H FH HCI+ WL+T S+G CP+ RQ F
Sbjct: 26 ICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQTF 81
>7297435 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 447
Score = 82.0 bits (201), Expect = 3e-16
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 59 CGICRNRYDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCRQGFQ 117
CGICR +++TCP C PG CP+V G+C+H FH+HCI +WL+ + CP+CRQ ++
Sbjct: 23 CGICRMSFESTCPECALPGDDCPLVWGVCSHCFHMHCIVKWLNLQPLNKQCPMCRQSWK 81
>CE00978 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 135
Score = 79.0 bits (193), Expect = 3e-15
Identities = 29/62 (46%), Positives = 42/62 (66%), Gaps = 2/62 (3%)
Query: 59 CGICRNRYDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETS--KGLCPLCRQGF 116
CGICR +++ C C +PG CP+VLG+C H FH HCI +W++ T+ + CPLCRQ +
Sbjct: 72 CGICRMEFESACNMCKFPGDDCPLVLGICRHAFHRHCIDKWIAAPTNQPRAQCPLCRQDW 131
Query: 117 QL 118
+
Sbjct: 132 TI 133
>Hs18777675 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 84
Score = 77.8 bits (190), Expect = 6e-15
Identities = 28/61 (45%), Positives = 40/61 (64%)
Query: 59 CGICRNRYDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCRQGFQL 118
CGICR ++ CP C PG CP+V G C+H FH+HCI +WL + + CP+CRQ ++
Sbjct: 23 CGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKF 82
Query: 119 R 119
+
Sbjct: 83 K 83
>At3g05870 [DO] KOG1493 Anaphase-promoting complex (APC) subunit 11
Length = 57
Score = 75.9 bits (185), Expect = 2e-14
Identities = 25/54 (46%), Positives = 39/54 (71%)
Query: 66 YDATCPSCDYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCRQGFQLR 119
+D CP C PG CP++ G CNH FH+HCI +W++++TS+ CP+CR+ +Q +
Sbjct: 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 56
>ECU01g1095 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 92
Score = 55.8 bits (133), Expect = 2e-08
Identities = 26/56 (46%), Positives = 31/56 (54%), Gaps = 6/56 (10%)
Query: 59 CGICRNRYDATCPSCDYPGSG---CPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
C ICRN TC C + C + G+CNH FH HCI +WLS SK +CPL
Sbjct: 27 CAICRNHIMDTCVECQNGMTNNGECKVSWGVCNHAFHTHCITRWLS---SKNVCPL 79
>YOL133w [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 121
Score = 52.4 bits (124), Expect = 3e-07
Identities = 25/65 (38%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Query: 59 CGICRNRYDATCPSCDYPG-----SGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPLCR 113
C ICRN C C + C G+CNH FH+HCI +W+ T + CPL
Sbjct: 55 CAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKT---RDACPLDN 111
Query: 114 QGFQL 118
Q +QL
Sbjct: 112 QPWQL 116
>At3g42830 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 115
Score = 52.0 bits (123), Expect = 4e-07
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 46/123 (37%)
Query: 2 RIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCGI 61
R E+ S V+ WAWDI D C I
Sbjct: 28 RFELKKWSAVALWAWDIVVDN------------------------------------CAI 51
Query: 62 CRNRYDATCPSC-----DYPGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL--CRQ 114
CRN C C C + G+CNH FH HCI +WL T + +CPL C
Sbjct: 52 CRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDVCEW 108
Query: 115 GFQ 117
FQ
Sbjct: 109 EFQ 111
>SPAC23H4.18c [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 107
Score = 50.8 bits (120), Expect = 8e-07
Identities = 23/58 (39%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 59 CGICRNRYDATCPSCDY-----PGSGCPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
C ICRN C C C + G CNH FH HCI +WL+T + +CPL
Sbjct: 41 CAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNT---RNVCPL 95
>Hs7657508 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 108
Score = 50.8 bits (120), Expect = 8e-07
Identities = 33/115 (28%), Positives = 41/115 (34%), Gaps = 44/115 (38%)
Query: 2 RIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCGI 61
R EV + V+ WAWDI D C I
Sbjct: 21 RFEVKKWNAVALWAWDIVVDN------------------------------------CAI 44
Query: 62 CRNRYDATCPSCDYPGSG-----CPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
CRN C C + C + G+CNH FH HCI +WL T + +CPL
Sbjct: 45 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL 96
>CE06614 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 110
Score = 50.8 bits (120), Expect = 8e-07
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 44/115 (38%)
Query: 2 RIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCGI 61
R EV S V+ WAWDI D C I
Sbjct: 23 RFEVKKWSAVALWAWDIQVDN------------------------------------CAI 46
Query: 62 CRNRYDATCPSCDYPGSG-----CPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
CRN C C + C + G CNH FH HCI +WL T + +CPL
Sbjct: 47 CRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKT---RQVCPL 98
>7290070 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 108
Score = 50.8 bits (120), Expect = 8e-07
Identities = 33/115 (28%), Positives = 41/115 (34%), Gaps = 44/115 (38%)
Query: 2 RIEVTDVSLVSTWAWDIPKDLSKGKHGVADQTVHMEKWXXXXXXXXXXXXXXXXXXVCGI 61
R EV + V+ WAWDI D C I
Sbjct: 21 RFEVKKWNAVALWAWDIVVDN------------------------------------CAI 44
Query: 62 CRNRYDATCPSCDYPGSG-----CPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
CRN C C + C + G+CNH FH HCI +WL T + +CPL
Sbjct: 45 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL 96
>7291966 [O] KOG2930 SCF ubiquitin ligase Rbx1 component
Length = 122
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 59 CGICRNRYDATCPSCDYPGSG----CPIVLGLCNHNFHVHCIKQWLSTETSKGLCPL 111
C ICRN C C + C + G CNH FH HCI +WL T +CPL
Sbjct: 57 CAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIARWLKTRL---VCPL 110
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.141 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,075,034
Number of Sequences: 60738
Number of extensions: 379872
Number of successful extensions: 1800
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 22
length of query: 162
length of database: 30,389,216
effective HSP length: 98
effective length of query: 64
effective length of database: 24,436,892
effective search space: 1563961088
effective search space used: 1563961088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)