ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4612 good L KOG2249 Replication, recombination and repair 3'-5' exonuclease
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4612 1586485 1587366 294
(294 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL080c [L] KOG2249 3'-5' exonuclease 291 6e-79
SPBC1604.09c [L] KOG2249 3'-5' exonuclease 199 4e-51
Hs9966857_2 [L] KOG2249 3'-5' exonuclease 173 3e-43
CE19046 [L] KOG2249 3'-5' exonuclease 158 8e-39
7294419 [L] KOG2249 3'-5' exonuclease 157 1e-38
At3g15080 [L] KOG2249 3'-5' exonuclease 157 2e-38
Hs13569960 [L] KOG2249 3'-5' exonuclease 147 1e-35
Hs22057667 [L] KOG2249 3'-5' exonuclease 133 3e-31
Hs21362094 [L] KOG2249 3'-5' exonuclease 131 1e-30
HsM12232443 [L] KOG2249 3'-5' exonuclease 120 3e-27
Hs6857800 [L] KOG2249 3'-5' exonuclease 116 3e-26
At3g27970 [L] KOG2249 3'-5' exonuclease 98 2e-20
At5g40310 [L] KOG2249 3'-5' exonuclease 95 1e-19
YGR276c [L] KOG2248 3'-5' exonuclease 85 1e-16
At3g50100 [L] KOG2248 3'-5' exonuclease 81 2e-15
CE07923 [L] KOG2248 3'-5' exonuclease 79 6e-15
At5g05540 [L] KOG2248 3'-5' exonuclease 75 1e-13
SPAC637.09 [L] KOG2248 3'-5' exonuclease 72 9e-13
YGL094c [L] KOG1275 PAB-dependent poly(A) ribonuclease subunit PAN2 71 2e-12
7295335 [L] KOG2248 3'-5' exonuclease 70 4e-12
CE24469 [L] KOG2248 3'-5' exonuclease 67 4e-11
CE25823 [L] KOG2248 3'-5' exonuclease 66 5e-11
7303975 [L] KOG1275 PAB-dependent poly(A) ribonuclease subunit PAN2 65 1e-10
7290209 [L] KOG2248 3'-5' exonuclease 65 2e-10
At5g25800 [L] KOG2248 3'-5' exonuclease 63 4e-10
Hs20555912 [L] KOG2249 3'-5' exonuclease 63 6e-10
Hs14764743 [L] KOG2248 3'-5' exonuclease 63 6e-10
YLR107w [L] KOG2248 3'-5' exonuclease 62 7e-10
ECU07g0380 [L] KOG2248 3'-5' exonuclease 62 7e-10
Hs13569913 [L] KOG2248 3'-5' exonuclease 62 1e-09
Hs22050790 [L] KOG2248 3'-5' exonuclease 60 4e-09
At3g50090 [L] KOG2248 3'-5' exonuclease 60 4e-09
At5g67240 [L] KOG2248 3'-5' exonuclease 60 5e-09
SPAC1782.08c [L] KOG2248 3'-5' exonuclease 58 1e-08
Hs22050764 [L] KOG2248 3'-5' exonuclease 58 2e-08
Hs22050759 [L] KOG2248 3'-5' exonuclease 55 1e-07
7301627 [L] KOG2248 3'-5' exonuclease 55 1e-07
SPAC22G7.04 [L] KOG1275 PAB-dependent poly(A) ribonuclease subun... 50 4e-06
>YOL080c [L] KOG2249 3'-5' exonuclease
Length = 289
Score = 291 bits (746), Expect = 6e-79
Identities = 137/234 (58%), Positives = 188/234 (79%), Gaps = 3/234 (1%)
Query: 55 GSKIMDMVANMNREIAKVEQERTKNT--HADGQMINSEDRFESVLKQKLNEDVAKKSLSR 112
GSKIMDMV NMN+EI+K E+++ + + N+ + +K ++ED S ++
Sbjct: 56 GSKIMDMVYNMNKEISKHEKDKLEGKVFEFNPNKANTSTTIKEPVKVGISEDTRINS-NK 114
Query: 113 TNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGI 172
+ +GKY++MDCEFVGVGP+GK+SALAR+SIVNY+G+VVLD FV+P+E V +WRTWVSGI
Sbjct: 115 SKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGI 174
Query: 173 KPHHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQK 232
KP HM NA+T ++ QK+ +++L+GRILVGH++ HDL ALMLSHP+ ++RDTSRH+PFR+
Sbjct: 175 KPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKL 234
Query: 233 YSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKLHNKQF 286
Y++GKTPSLKKLT+E+L++ IQ+GEHSS+EDARATMLLYK +K EFEK+H F
Sbjct: 235 YAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEKIHRNTF 288
>SPBC1604.09c [L] KOG2249 3'-5' exonuclease
Length = 260
Score = 199 bits (506), Expect = 4e-51
Identities = 105/186 (56%), Positives = 134/186 (71%), Gaps = 5/186 (2%)
Query: 106 AKKSLSRTN--GVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVT 163
A K +TN +GKY++MDCE VGV D S LARVSIVNY+G+VV D +VRPKE VT
Sbjct: 78 ASKLTRKTNLETLGKYIAMDCEMVGVADDM--SVLARVSIVNYHGHVVYDTYVRPKEKVT 135
Query: 164 DWRTWVSGIKPHHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDT 223
DWRTWVSG+K HM +A + E Q +V+ +L R+LVGH+VH+DL L+LSHPRRMIRDT
Sbjct: 136 DWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDT 195
Query: 224 SRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKLHN 283
SR +R K ++G+TP LKKL + IL DIQ G+HSS++DA+ATM LYK K E +++
Sbjct: 196 SRFSGYR-KLAKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKKEMDEVAF 254
Query: 284 KQFGPS 289
K S
Sbjct: 255 KGLSKS 260
>Hs9966857_2 [L] KOG2249 3'-5' exonuclease
Length = 252
Score = 173 bits (438), Expect = 3e-43
Identities = 88/191 (46%), Positives = 128/191 (66%), Gaps = 6/191 (3%)
Query: 96 VLKQKLNEDVAKKSLSRTN-----GVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNV 150
+ +++L + SLS G+ + +++DCE VGVGP G++S ARVSIVN YG
Sbjct: 45 IARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKC 104
Query: 151 VLDLFVRPKEPVTDWRTWVSGIKPHHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTA 210
V D +V+P EPVTD+RT VSGI+P ++ E QK+V+ +LKGRILVGH++H+DL
Sbjct: 105 VYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKV 164
Query: 211 LMLSHPRRMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLL 270
L L HP++ IRDT ++ PF+ + G+ PSL+ L+++IL L +Q EH SI+DA+A M L
Sbjct: 165 LFLDHPKKKIRDTQKYKPFKSQVKSGR-PSLRLLSEKILGLQVQQAEHCSIQDAQAAMRL 223
Query: 271 YKSDKLEFEKL 281
Y K E+E +
Sbjct: 224 YVMVKKEWESM 234
>CE19046 [L] KOG2249 3'-5' exonuclease
Length = 269
Score = 158 bits (400), Expect = 8e-39
Identities = 92/242 (38%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 62 VANMNREIAKVEQERTKNTHADGQMINSEDRFESVL----KQKLNEDV-AKKSLSRTNGV 116
V M K E+E+ + S+D F V KQK+N A+++L+ + V
Sbjct: 21 VLQMKLNEEKAEKEKAAKAEKEANPEGSDDGFTKVQTKKQKQKMNRKRRAQEALAAASEV 80
Query: 117 G-------------------KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVR 157
K +++DCE+VG G G LAR+SIVN G +V D FV+
Sbjct: 81 KRVHHDIPVVIEDSERGELTKVIAIDCEYVGAGMGGTTDILARISIVNELGKIVYDKFVK 140
Query: 158 PKEPVTDWRTWVSGIKPHHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPR 217
P E VTD+RT VSGI+P +M A+ + Q +VS ++ GRI++GH+VH+D L L+H R
Sbjct: 141 PTEKVTDFRTAVSGIRPENMIKAIPFDRAQTEVSKLIDGRIVIGHAVHNDFRVLKLNHIR 200
Query: 218 RMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLE 277
++ RDT++ + + TPSLKKL KE+L ++IQ GEH SI DAR + LY++ K +
Sbjct: 201 KLTRDTAKCTILKNMANHHGTPSLKKLAKEVLGIEIQRGEHDSITDARVALRLYEAVKKQ 260
Query: 278 FE 279
+E
Sbjct: 261 WE 262
>7294419 [L] KOG2249 3'-5' exonuclease
Length = 290
Score = 157 bits (398), Expect = 1e-38
Identities = 81/168 (48%), Positives = 113/168 (67%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
+ ++MDCE VGVG + +D LARVSIVN G+V+LD +V+P++ VTD+RT VSGI+P +
Sbjct: 116 RILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVSGIRPQDI 175
Query: 178 ANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGK 237
AN Q +V ++ GRILVGH + +DL L + HP IRDTS + P + S
Sbjct: 176 ANGEDFAAVQNEVMKLIHGRILVGHGLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTH 235
Query: 238 TPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKLHNKQ 285
TPSLK+LTK +L +IQ GEH+S+EDARA M +Y +++EK K+
Sbjct: 236 TPSLKRLTKAVLGQEIQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKK 283
>At3g15080 [L] KOG2249 3'-5' exonuclease
Length = 273
Score = 157 bits (396), Expect = 2e-38
Identities = 84/162 (51%), Positives = 114/162 (69%), Gaps = 6/162 (3%)
Query: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
V+MDCE VGV G SAL RV++VN +GNV+ D FVRP E V D+RT +SGI+P +
Sbjct: 82 VAMDCEMVGVS-QGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDLRK 140
Query: 180 AVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKT- 238
A Q +V+ ++KG+ILVGH++H+DL AL+L+HP++ IRDT + PF +GKT
Sbjct: 141 AKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPF----LKGKTR 196
Query: 239 PSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEK 280
SLK L EIL DIQ+GEH I+DARA M+LY+ ++ E+EK
Sbjct: 197 KSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEWEK 238
>Hs13569960 [L] KOG2249 3'-5' exonuclease
Length = 353
Score = 147 bits (372), Expect = 1e-35
Identities = 87/231 (37%), Positives = 130/231 (55%), Gaps = 11/231 (4%)
Query: 59 MDMVANMNREIAKVEQERTKNTHADGQMINSEDRFESVLKQKLNEDVAKKSLSRTNGVG- 117
+D++ + K+ T++ Q +S+ K S ++ +G
Sbjct: 116 VDLLGEFQSALPKINSHPTRSQKKSSQKKSSKKNHPQ--KNAPQNSTQAHSENKCSGASQ 173
Query: 118 ----KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIK 173
K V++DCE VG GP G S+LAR SIVNY G+V+ D ++ P + D+RT SGI+
Sbjct: 174 KLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIR 233
Query: 174 PHHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKY 233
HM NA + + Q+ +L G+I+VGH++H+D AL HP+ + RDTS P +K
Sbjct: 234 KQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKA 293
Query: 234 S--EGKTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLLYKSDKLEFEK 280
E T SLK LTK++L DIQ G+ HSS+EDA+ATM LYK ++E+E+
Sbjct: 294 DCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEE 344
>Hs22057667 [L] KOG2249 3'-5' exonuclease
Length = 325
Score = 133 bits (334), Expect = 3e-31
Identities = 72/168 (42%), Positives = 108/168 (63%), Gaps = 6/168 (3%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
K V++DCE VG GP G+ S LAR SIV+Y+GNV+ D ++RP+ P+ D+RT SGI HM
Sbjct: 109 KCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHM 168
Query: 178 ANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQK---YS 234
AV + QK++ +LKG+++VGH++H+D AL HPR RDT+ F + ++
Sbjct: 169 RKAVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHT 228
Query: 235 EGKTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLLYKSDKLEFEK 280
+ SLK L ++L IQ G+ HSS+EDA M LY+ ++++E+
Sbjct: 229 RARV-SLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQ 275
>Hs21362094 [L] KOG2249 3'-5' exonuclease
Length = 325
Score = 131 bits (329), Expect = 1e-30
Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 6/168 (3%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
K V++DCE VG GP G+ S LAR SIV+Y+G+V+ D ++RP+ P+ D+RT SGI HM
Sbjct: 109 KCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIADYRTRWSGITRQHM 168
Query: 178 ANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQK---YS 234
AV + QK++ +LKG+++VGH++H+D AL HPR RDT+ F + ++
Sbjct: 169 RKAVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHT 228
Query: 235 EGKTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLLYKSDKLEFEK 280
+ SLK L ++L IQ G+ HSS+EDA M LY+ ++++E+
Sbjct: 229 RARV-SLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQ 275
>HsM12232443 [L] KOG2249 3'-5' exonuclease
Length = 209
Score = 120 bits (300), Expect = 3e-27
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 6/159 (3%)
Query: 127 VGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANAVTQEDC 186
VG GP G+ S LAR SIV+Y+G+V+ D ++RP+ P+ D+RT SGI HM AV +
Sbjct: 2 VGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVA 61
Query: 187 QKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQK---YSEGKTPSLKK 243
QK++ +LKG+++VGH++H+D AL HPR RDT+ F + ++ + SLK
Sbjct: 62 QKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARV-SLKD 120
Query: 244 LTKEILQLDIQDGE--HSSIEDARATMLLYKSDKLEFEK 280
L ++L IQ G+ HSS+EDA M LY+ ++++E+
Sbjct: 121 LALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQ 159
>Hs6857800 [L] KOG2249 3'-5' exonuclease
Length = 181
Score = 116 bits (291), Expect = 3e-26
Identities = 68/162 (41%), Positives = 98/162 (59%), Gaps = 5/162 (3%)
Query: 115 GVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKP 174
G + V+MDCE VG+GP ++S LAR S+VN +G V+ D F+RP+ +TD+RT VSG+ P
Sbjct: 3 GSREVVAMDCEMVGLGPH-RESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61
Query: 175 HHMANAVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTS--RHMPFRQK 232
HM A + ++ +LKG+++VGH + HD AL I DTS R + K
Sbjct: 62 QHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK 121
Query: 233 YSEGKTPSLKKLTKEILQLDIQDG--EHSSIEDARATMLLYK 272
+ SL+ L++ +L IQ+ HSS+EDARATM LY+
Sbjct: 122 LDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163
>At3g27970 [L] KOG2249 3'-5' exonuclease
Length = 354
Score = 97.8 bits (242), Expect = 2e-20
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 16/178 (8%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
+ V++ C+ VG G DG ARV I + NV+ +V+P VT +R +GI+P ++
Sbjct: 131 RVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENL 190
Query: 178 ANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDT 223
+A+ + Q+++ L K RILVGH + HDL L L +P MIRDT
Sbjct: 191 RDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDT 250
Query: 224 SRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKL 281
+++ P + + + SLK LT+ L D+ G ED ATM LY + + K+
Sbjct: 251 AKYPPLMK--TSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHKI 306
>At5g40310 [L] KOG2249 3'-5' exonuclease
Length = 348
Score = 94.7 bits (234), Expect = 1e-19
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
+ V++ C+ VG G DG ARV I + NVV +V+P PVT++R ++GI+P ++
Sbjct: 125 RVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENL 184
Query: 178 ANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDT 223
+A+ + Q++V L K RILVGH + + L +L L + MIRDT
Sbjct: 185 RDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDT 244
Query: 224 SRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKLHN 283
+ + P + S + SLK LT+ L DI G ED ATM LY ++ ++K
Sbjct: 245 AEYPPLMK--SSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLY--TRMRYQKHRA 300
Query: 284 KQFGPSKPTQ 293
+ + + TQ
Sbjct: 301 EAYPLASDTQ 310
>YGR276c [L] KOG2248 3'-5' exonuclease
Length = 553
Score = 84.7 bits (208), Expect = 1e-16
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 113 TNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGI 172
T+G ++DCE + L R+S+VN+ V+ + V+P P+ D+ T SGI
Sbjct: 219 THGGSHIFALDCEMC---LSEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGI 275
Query: 173 KPHHMANAV--TQEDCQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPF 229
+ T + QK + ++ + IL+GHS+ +DL + L HP ++ DT+ + +
Sbjct: 276 TEEKLTVGAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHP--LVVDTA--IIY 331
Query: 230 RQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272
K + PSLK L++ L IQ+GEH S+EDARA + L K
Sbjct: 332 HHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTK 374
>At3g50100 [L] KOG2248 3'-5' exonuclease
Length = 406
Score = 81.3 bits (199), Expect = 2e-15
Identities = 66/186 (35%), Positives = 97/186 (51%), Gaps = 18/186 (9%)
Query: 89 SEDRFESVLKQKLNEDVAKKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYG 148
SED F S + K+ KK + TN V++DCE V + DG + L RV +V+
Sbjct: 119 SEDWFVSDVGMKM-----KKVMESTN----MVAVDCEMV-LCEDGTEG-LVRVGVVDRDL 167
Query: 149 NVVLDLFVRPKEPVTDWRTWVSGIKPHHMANA-VTQEDCQKQVSNVLK-GRILVGHSVHH 206
V+LD FV+P +PV D+RT ++GI + NA ++ D Q+ + L G ILVGHS++
Sbjct: 168 KVILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNR 227
Query: 207 DLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDG--EHSSIEDA 264
DL L + HP+ + P +K + PSL L K IL +++ H + DA
Sbjct: 228 DLEVLKIDHPKVIDTALVFKYPNTRKL---RRPSLNNLCKSILGYEVRKTGVPHDCVHDA 284
Query: 265 RATMLL 270
A M L
Sbjct: 285 SAAMKL 290
>CE07923 [L] KOG2248 3'-5' exonuclease
Length = 594
Score = 79.3 bits (194), Expect = 6e-15
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 107 KKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWR 166
K+ + + S+DCE D + L R+SIV+ + N +LD V+P+ +TD+
Sbjct: 209 KQGYKKISASSPMFSVDCEMCET--DVANRELTRISIVDEFENTILDTLVKPEGRITDYV 266
Query: 167 TWVSGIKPHHMANAVTQ-EDCQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRDTS 224
T SGI P M T D QK + ++L ILVGHS+ HDL A+ ++HP D
Sbjct: 267 TRWSGITPDMMEGVTTTLGDVQKAIQSLLPPDAILVGHSLEHDLQAMKMTHP--FCLDVG 324
Query: 225 RHMPFRQKYSEGKTPSLKKLTKEILQLDIQ-DGEHSSIEDARATMLL 270
+ + +E + SLK LT+ L IQ + H S EDA A M L
Sbjct: 325 HVLNYTNSNTEFRN-SLKNLTELFLGAQIQSEFGHCSYEDAWAAMRL 370
>At5g05540 [L] KOG2248 3'-5' exonuclease
Length = 466
Score = 74.7 bits (182), Expect = 1e-13
Identities = 62/188 (32%), Positives = 99/188 (51%), Gaps = 18/188 (9%)
Query: 93 FESVLKQKLNEDVAKKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVL 152
F S + + + KK + T + +++DCE V + DG + A+ RV+ V+ V+L
Sbjct: 118 FPSNAEDWVRTGLGKKKMEPTKI--EMIAIDCEMV-LCEDGSE-AVVRVAAVDRDLKVIL 173
Query: 153 DLFVRPKEPVTDWRTWVSGIKPHHMANA-VTQEDCQ-KQVSNVLKGRILVGHSVHHDLTA 210
D FV+P +PV D+RT+++G+ + A ++ D Q K + + + ILVG S++HDL
Sbjct: 174 DEFVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKV 233
Query: 211 LMLSHPRRMIRDTSRHMPFRQKYS------EGKTPSLKKLTKEILQLDIQDG--EHSSIE 262
L + H R + DTS + F+ Y K PSL L K IL ++Q H+ +
Sbjct: 234 LKVDHAR--VIDTS--LVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVH 289
Query: 263 DARATMLL 270
DA A M L
Sbjct: 290 DAEAAMKL 297
>SPAC637.09 [L] KOG2248 3'-5' exonuclease
Length = 623
Score = 72.0 bits (175), Expect = 9e-13
Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
K +++DCE V +G + +ARV+IV+ V+ D FV+P+ PVTD+ T SGI +
Sbjct: 267 KILAIDCEMVRT-ENGLE--IARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323
Query: 178 ANAVT-----QEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQK 232
N T Q +K V N +L+GHS++ DL L +HP I DT+ +
Sbjct: 324 RNVTTVLSDVQSYLKKTVDN---NTVLLGHSLNSDLNCLKFTHPH--IIDTAN--IYNHT 376
Query: 233 YSEGKTPSLKKLTKEILQLDIQDG---EHSSIEDARATMLLYK 272
PSLK L + L+ +IQ H S EDA A + L K
Sbjct: 377 RGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLK 419
>YGL094c [L] KOG1275 PAB-dependent poly(A) ribonuclease subunit PAN2
Length = 1115
Score = 71.2 bits (173), Expect = 2e-12
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 29/210 (13%)
Query: 101 LNEDVAKKSLSRTNGVGKYVSMDCEFVGVGPDG-------KDSALARVSIVN-----YYG 148
L D A KS + ++VS+ E + G K +ALAR+SI+ YG
Sbjct: 895 LTHDEAPKSGTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRGEEGELYG 954
Query: 149 NVVLDLFVRPKEPVTDWRTWVSGIKPHHM------ANAVTQEDCQKQVSNVLK-GRILVG 201
+D +V + D+ T SGI P + V + ++V +++ G + VG
Sbjct: 955 VPFVDDYVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVG 1014
Query: 202 HSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSI 261
H +++D + ++ PR IRDT+ + ++Y SL+ L +L ++IQ+G H SI
Sbjct: 1015 HGLNNDFKHININVPRNQIRDTAIYFLQGKRYL-----SLRYLAYVLLGMNIQEGNHDSI 1069
Query: 262 EDARATMLLYK-----SDKLEFEKLHNKQF 286
EDA ++LYK +K FEK+ N +
Sbjct: 1070 EDAHTALILYKKYLHLKEKAIFEKVLNSVY 1099
>7295335 [L] KOG2248 3'-5' exonuclease
Length = 681
Score = 70.1 bits (170), Expect = 4e-12
Identities = 64/177 (36%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 122 MDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANAV 181
+DCE + + L R+SIVN V + V P +TD+ T SGI M
Sbjct: 359 VDCEMCHT--EAGCNELTRISIVNENYETVYETLVLPNNRITDYLTQYSGITAEIMEQVT 416
Query: 182 TQED-CQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTP 239
+ D QK+VS +L ILVG S++ DL A+ + HP + DTS + F +
Sbjct: 417 KRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKMMHP--YVIDTS--VCFNTSGVRRRKT 472
Query: 240 SLKKLTKEILQLDIQDG--EHSSIEDARATMLLYKSDKLEFEKLHNK-QFGPSKPTQ 293
LK L K LQ IQ+ H SIED+RAT+ L K +KL N +FG TQ
Sbjct: 473 KLKDLAKTFLQEIIQENIDGHDSIEDSRATLKLVK------KKLANSIEFGDQILTQ 523
>CE24469 [L] KOG2248 3'-5' exonuclease
Length = 365
Score = 66.6 bits (161), Expect = 4e-11
Identities = 57/171 (33%), Positives = 84/171 (48%), Gaps = 21/171 (12%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
K ++DCE V +G + +ARVS+V+ G V+LD F P V + + SG+ M
Sbjct: 180 KVFALDCELVHT-LNGLE--VARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVTEKDM 236
Query: 178 ANAVTQEDCQKQVSNVLKGR-ILVGHSVHHDLTALMLSHPRRM-------IRDTSRHMPF 229
+A++ E C+ Q+ ++ +LVGHS+ DL AL L H + I D SR
Sbjct: 237 ESAISLEACRLQLFQLINSETLLVGHSLESDLKALRLVHHNVIDTAVLFSIVDPSRSYIL 296
Query: 230 RQKYSEGKTPSLKKLTKEILQLDIQD--GEHSSIEDARATMLLYKSDKLEF 278
+ SL+ L K+ L D+Q HSSIED+ M L + L F
Sbjct: 297 KL--------SLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELLATRHLFF 339
>CE25823 [L] KOG2248 3'-5' exonuclease
Length = 305
Score = 66.2 bits (160), Expect = 5e-11
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
K ++DCE V +G + +ARVS+V+ G V+LD F P V + + SG+ M
Sbjct: 143 KVFALDCELVHT-LNGLE--VARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVTEKDM 199
Query: 178 ANAVTQEDCQKQVSNVLKGR-ILVGHSVHHDLTALMLSHPRRM-------IRDTSRHMPF 229
+A++ E C+ Q+ ++ +LVGHS+ DL AL L H + I D SR
Sbjct: 200 ESAISLEACRLQLFQLINSETLLVGHSLESDLKALRLVHHNVIDTAVLFSIVDPSRSYIL 259
Query: 230 RQKYSEGKTPSLKKLTKEILQLDIQD--GEHSSIEDARATMLLYKSDKLEFEKL 281
+ SL+ L K+ L D+Q HSSIED+ M L + L KL
Sbjct: 260 KL--------SLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELLATRHLLSVKL 305
>7303975 [L] KOG1275 PAB-dependent poly(A) ribonuclease subunit PAN2
Length = 1209
Score = 65.1 bits (157), Expect = 1e-10
Identities = 64/192 (33%), Positives = 85/192 (43%), Gaps = 34/192 (17%)
Query: 117 GKYVSMDCEFVGVGP-------DGKDSAL-------ARVSIVNYYGNV----VLDLFVRP 158
G V+MD EFV + P DGK + + AR+S + G +D ++
Sbjct: 1001 GDLVAMDAEFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRGQGPAEGVPFMDDYIST 1060
Query: 159 KEPVTDWRTWVSGIKPHHM-AN------AVTQEDCQKQVSNVLKGRILVGHSVHHDLTAL 211
+E V D+ T SGIKP + AN + QK V G I VGH + +D +
Sbjct: 1061 QEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQKLKYLVDVGVIFVGHGLKNDFRVI 1120
Query: 212 MLSHPRRMIRDTSR--HMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATML 269
+ P I DT HMP + S L+ L L IQ H SIEDAR T+
Sbjct: 1121 NIYVPSEQIIDTVHLFHMPHHRMVS------LRFLAWHFLGTKIQSETHDSIEDARTTLQ 1174
Query: 270 LYKSD-KLEFEK 280
LYK KL+ EK
Sbjct: 1175 LYKHYLKLQEEK 1186
>7290209 [L] KOG2248 3'-5' exonuclease
Length = 631
Score = 64.7 bits (156), Expect = 2e-10
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 121 SMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM-AN 179
++DCE + G+ + +VS+V G +V + FVRP + D+ T SGI + +
Sbjct: 466 ALDCE---MSYTGRGLDVTKVSLVALNGQLVYEHFVRPVCDIIDYNTQYSGITETDLCSG 522
Query: 180 AVTQEDCQKQVSNVLKG-RILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKT 238
A + + Q+ + ++ IL+GH + +DL AL L H + DTS P + +
Sbjct: 523 AKSLAEVQRDLLQLITADTILIGHGLENDLRALRLVH--NTLIDTSISFPHCNGFPYRR- 579
Query: 239 PSLKKLTKEILQLDIQDGE----HSSIEDARATMLL 270
+L+ LTK L+ DIQ G+ HSS ED+RA M L
Sbjct: 580 -ALRHLTKVHLKRDIQAGDGTTGHSSFEDSRACMEL 614
>At5g25800 [L] KOG2248 3'-5' exonuclease
Length = 534
Score = 63.2 bits (152), Expect = 4e-10
Identities = 39/98 (39%), Positives = 56/98 (56%), Gaps = 9/98 (9%)
Query: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
V++DCE G+ L RV++V+ G V+LD V P P+TD+ T SGI M
Sbjct: 216 VALDCEMEGL-------ELTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEG 268
Query: 180 AVTQ-EDCQKQ-VSNVLKGRILVGHSVHHDLTALMLSH 215
T +D Q++ + V K ILVGHS+ +DL +L +SH
Sbjct: 269 VTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH 306
>Hs20555912 [L] KOG2249 3'-5' exonuclease
Length = 217
Score = 62.8 bits (151), Expect = 6e-10
Identities = 33/81 (40%), Positives = 49/81 (59%)
Query: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
V++D E VG GP G S LA+ SIVNY G+V+ D ++ P D+ T SGI+ HM N
Sbjct: 101 VAIDSEMVGTGPKGHVSFLAQCSIVNYNGDVLYDEYILPPCHTVDYWTRWSGIQKQHMVN 160
Query: 180 AVTQEDCQKQVSNVLKGRILV 200
A + + Q+ +L G+I++
Sbjct: 161 ATPFKIARGQILKILTGKIVL 181
>Hs14764743 [L] KOG2248 3'-5' exonuclease
Length = 1221
Score = 62.8 bits (151), Expect = 6e-10
Identities = 59/170 (34%), Positives = 86/170 (49%), Gaps = 16/170 (9%)
Query: 107 KKSLSRTNGVGKYVSMDCE--FVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTD 164
+K LS G Y ++DCE + G + L RV++V+ +VV D FV+P + D
Sbjct: 1049 EKELSGDTHPGIY-ALDCEMSYTTYGLE-----LTRVTVVDTDVHVVYDTFVKPDNEIVD 1102
Query: 165 WRTWVSGIKPHHMAN-AVTQEDCQKQVSNVLKG-RILVGHSVHHDLTALMLSHPRRMIRD 222
+ T SG+ +A+ +VT D Q + ++ IL+GHS+ DL AL + H + D
Sbjct: 1103 YNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIH--STVVD 1160
Query: 223 TSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDG--EHSSIEDARATMLL 270
TS P R + SL+ L + L+ IQD HSS EDA A M L
Sbjct: 1161 TSVLFPHRLGLPYKR--SLRNLMADYLRQIIQDNVDGHSSSEDAGACMHL 1208
>YLR107w [L] KOG2248 3'-5' exonuclease
Length = 404
Score = 62.4 bits (150), Expect = 7e-10
Identities = 56/191 (29%), Positives = 92/191 (47%), Gaps = 24/191 (12%)
Query: 93 FESVLKQKLNEDVAK----KSLSRTNGVGKYVSMDCE--FVGVGPDGKDSALARVSIVNY 146
F V + + +++ K S +GV +S+DCE F +G + + R++IV++
Sbjct: 213 FHHVFRGESYDELCKISKFSSTDDIDGVENVLSLDCEMAFTSLGYE-----MIRLTIVDF 267
Query: 147 Y-GNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANAVTQE---DCQKQVSNVLKGRILVGH 202
+ G + D ++P + D + SG+ N T + D + + K IL+GH
Sbjct: 268 FTGKTLFDHVIQPIGDIVDLNSDFSGVHEIDRTNCPTYKEALDVFLSENLINKNSILIGH 327
Query: 203 SVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTP-SLKKLTKEILQLDIQDGEHSSI 261
+ +DL + L H + + DT+ YS K SLK L E+L IQ+GEH S
Sbjct: 328 GLENDLNVMRLFHNK--VIDTAI------LYSRTKFKVSLKNLAFEVLSRKIQNGEHDSS 379
Query: 262 EDARATMLLYK 272
+DA ATM + K
Sbjct: 380 QDAIATMDVVK 390
>ECU07g0380 [L] KOG2248 3'-5' exonuclease
Length = 370
Score = 62.4 bits (150), Expect = 7e-10
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 104 DVAKKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVT 163
DV+K + + + V++D E V GK+ RV++V+ G V+ D ++PKEPV
Sbjct: 132 DVSKYRRAHVSALHDIVALDVEKVRTKM-GKEPG--RVTMVDCNGEVIYDKIIKPKEPVV 188
Query: 164 DWRTWVSGIKPHHMANAVTQEDCQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRD 222
D+ T SG+ + + E + +V N + +++GH + +DL++L L H + I D
Sbjct: 189 DYLTKYSGLTKEVVDRGIDIEIVRNEVLNFIGTNTVIIGHGIENDLSSLRLYHDK--IID 246
Query: 223 TSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEF 278
T+ H+ G+ SL +L + L DI H S DA T L S K+++
Sbjct: 247 TA-HLFLSPL---GRKISLAQLARTYLAKDIHVETHDSRVDA-VTCLELLSVKIQY 297
>Hs13569913 [L] KOG2248 3'-5' exonuclease
Length = 774
Score = 61.6 bits (148), Expect = 1e-09
Identities = 59/182 (32%), Positives = 84/182 (45%), Gaps = 22/182 (12%)
Query: 94 ESVLKQKLNEDVAKKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLD 153
E+ L K N +A S +DCE K L R+S+V G V+D
Sbjct: 211 ENFLLTKCNGSIADNS--------PLFGLDCEMCLTS---KGRELTRISLVAEGGCCVMD 259
Query: 154 LFVRPKEPVTDWRTWVSGIKPHHMANAVTQ-EDCQKQVSNVL-KGRILVGHSVHHDLTAL 211
V+P+ + D+ T SGI + T+ +D Q+Q+ +L +LVGHS+ DL AL
Sbjct: 260 ELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRAL 319
Query: 212 MLSHPRRMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGE---HSSIEDARATM 268
+ HP + DTS +G+ LK L K IL DIQ + H + EDAR +
Sbjct: 320 KMIHP--YVIDTS----LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTIL 373
Query: 269 LL 270
L
Sbjct: 374 EL 375
>Hs22050790 [L] KOG2248 3'-5' exonuclease
Length = 539
Score = 60.1 bits (144), Expect = 4e-09
Identities = 55/168 (32%), Positives = 81/168 (47%), Gaps = 12/168 (7%)
Query: 107 KKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWR 166
KK LSR G Y ++DCE L RV++V+ VV D FV+P + D+
Sbjct: 354 KKELSRDAYPGIY-ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYN 409
Query: 167 TWVSGIKPHHMA-NAVTQEDCQKQVSNVLKGR-ILVGHSVHHDLTALMLSHPRRMIRDTS 224
T SG+ +A ++T Q + + + IL+GHS+ DL AL L H + DT+
Sbjct: 410 TRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--NTVVDTA 467
Query: 225 RHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLL 270
P + + SL+ L + L IQD + H+S EDA A + L
Sbjct: 468 VLFPHYLGFPYKR--SLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 513
>At3g50090 [L] KOG2248 3'-5' exonuclease
Length = 322
Score = 60.1 bits (144), Expect = 4e-09
Identities = 60/215 (27%), Positives = 100/215 (45%), Gaps = 32/215 (14%)
Query: 69 IAKVEQERTKNTHADGQMI---------NSEDRFESVLKQKLNEDVAKKSLSRTNGVGKY 119
IAK ++E N + +++ N + F S K DV K +S +
Sbjct: 17 IAKFKKESPANDSPEQRLVRLTNENPQYNVDFLFHSYSKDWFVSDVGMK-MSNVMIPNQM 75
Query: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
+++DCE V + DG + + RV V+ V+LD FV+P +PV D+RT ++G+ +
Sbjct: 76 LALDCEMV-LCEDGTEGVV-RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQK 133
Query: 180 A-VTQEDCQKQVSNVLK-GRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGK 237
A ++ D Q+++ L G IL+ H + D T+L+ +P SR + +
Sbjct: 134 ATLSLVDIQEKLRPFLSAGAILIDHPIVID-TSLVFKYP------NSRKL---------R 177
Query: 238 TPSLKKLTKEILQLDIQDG--EHSSIEDARATMLL 270
PSL L +L ++Q H + DA A M L
Sbjct: 178 RPSLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKL 212
>At5g67240 [L] KOG2248 3'-5' exonuclease
Length = 745
Score = 59.7 bits (143), Expect = 5e-09
Identities = 38/93 (40%), Positives = 56/93 (59%), Gaps = 4/93 (4%)
Query: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHM 177
+ +S+DCE V DG AL RV V+ VVLD FV+P +PV D++T ++G+ +
Sbjct: 144 RMLSIDCEMVTC-EDGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201
Query: 178 ANA-VTQEDCQKQVSNVLK-GRILVGHSVHHDL 208
A ++ D QK++ L G ILVGH +H+DL
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDL 234
>SPAC1782.08c [L] KOG2248 3'-5' exonuclease
Length = 540
Score = 58.2 bits (139), Expect = 1e-08
Identities = 50/168 (29%), Positives = 84/168 (49%), Gaps = 21/168 (12%)
Query: 119 YVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKP-HHM 177
+ ++DCE +G + LAR+++V ++++D+F++PK + T SGI +
Sbjct: 382 HCALDCELCYT-TNGME--LARLTVVAKE-SIIMDVFIKPKGKILSLNTRFSGIHDAKEL 437
Query: 178 ANAVTQEDCQKQVSNV--LKGRILVGHSVHHDLTALMLSHPR----RMIRDTSRHMPFRQ 231
+ +T + ++ + K IL+GH + +DL A+ L H R ++ +R PFR
Sbjct: 438 ESGITMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRY 497
Query: 232 KYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLL--YKSDKLE 277
SLK LTK+ L IQ H S EDA + + L YK+ E
Sbjct: 498 --------SLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFYKTKSNE 537
>Hs22050764 [L] KOG2248 3'-5' exonuclease
Length = 506
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 107 KKSLSRTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWR 166
KK LSR G Y ++DCE L RV++V+ VV D FV+P + D+
Sbjct: 321 KKELSRDAYPGIY-ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYN 376
Query: 167 TWVSGIKPHHMA-NAVTQEDCQKQVSNVLKGR-ILVGHSVHHDLTALMLSHPRRMIRDTS 224
T SG+ +A ++T Q + + + IL+GHS+ DL AL L H + DT+
Sbjct: 377 TRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTA 434
Query: 225 RHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLL 270
P + + SL+ L + L IQ+ + H+S EDA A + L
Sbjct: 435 VLFPHYLGFPYKR--SLRNLAADYLAQIIQNSQDGHNSSEDANACLQL 480
>Hs22050759 [L] KOG2248 3'-5' exonuclease
Length = 226
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/137 (32%), Positives = 69/137 (49%), Gaps = 8/137 (5%)
Query: 138 LARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMA-NAVTQEDCQKQVSNVLKG 196
L RV++V+ VV D FV+P + D+ T SG+ +A ++T Q + +
Sbjct: 68 LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQAILLSFFSA 127
Query: 197 R-ILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQD 255
+ IL+GHS+ DL AL L H + DT+ P + + SL+ L + L IQD
Sbjct: 128 QTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFPYKR--SLRNLAADYLAQIIQD 183
Query: 256 GE--HSSIEDARATMLL 270
+ H+S EDA A + L
Sbjct: 184 SQDGHNSSEDASACLQL 200
>7301627 [L] KOG2248 3'-5' exonuclease
Length = 1010
Score = 55.1 bits (131), Expect = 1e-07
Identities = 52/158 (32%), Positives = 73/158 (45%), Gaps = 27/158 (17%)
Query: 138 LARVSIVNYYGNVVLDLFVRPKEPVTDWRT-WV------------------SGIKPHHMA 178
L RV++V+ G V D V+P + D+ T WV SGI ++
Sbjct: 849 LTRVTVVDINGRSVYDALVKPDNQIVDYNTTWVNVAFRLFRINLQYSDFSYSGITEAMLS 908
Query: 179 NAV-TQEDCQKQVSNVLKGR-ILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEG 236
N T D Q + ++ + +LVGHS+ DL AL L H ++ DTS + F K
Sbjct: 909 NETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLIHD--VVVDTS--VLFPHKMGPP 964
Query: 237 KTPSLKKLTKEILQLDIQDGE--HSSIEDARATMLLYK 272
K +LK L E L+ IQ+ E H S EDA + L K
Sbjct: 965 KKRALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIK 1002
>SPAC22G7.04 [L] KOG1275 PAB-dependent poly(A) ribonuclease subunit PAN2
Length = 1115
Score = 50.1 bits (118), Expect = 4e-06
Identities = 55/179 (30%), Positives = 81/179 (44%), Gaps = 22/179 (12%)
Query: 118 KYVSMDCEFVGVGPDGKDS-------ALARVSIVNYYGN----VVLDLFVRPKEPVTDWR 166
++V++ E V DG S +LARVS++ G +D +V + VTD+
Sbjct: 892 EFVALQQEETEVRSDGTKSTIKPSKLSLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYL 951
Query: 167 TWVSGIKPHHMA------NAVTQEDCQKQVSNVLK-GRILVGHSVHHDLTALMLSHPRRM 219
T SGI P + N V + K++ ++ G I VGH + D + L P
Sbjct: 952 TEYSGIHPGDLDPDRSPYNVVPLKVAYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQ 1011
Query: 220 IRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKS-DKLE 277
+ DT + S + SLK L +L +IQ EH SIEDA + LY DKL+
Sbjct: 1012 VVDT---VDLFFLSSRQRKLSLKFLAWYLLDEEIQLTEHDSIEDALTALKLYDCYDKLK 1067
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,502,626
Number of Sequences: 60738
Number of extensions: 595706
Number of successful extensions: 1318
Number of sequences better than 1.0e-05: 38
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 39
length of query: 294
length of database: 30,389,216
effective HSP length: 106
effective length of query: 188
effective length of database: 23,950,988
effective search space: 4502785744
effective search space used: 4502785744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)