ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4686 good C KOG3366 Energy production and conversion Mitochondrial F1F0-ATP synthase, subunit d/ATP7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4686 1612156 1611635 -174
(174 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL016c [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7 280 7e-76
SPBC29A10.13 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit... 171 4e-43
Hs5453559 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/... 62 4e-10
Hs17452829 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d... 52 3e-07
7300478 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7 51 9e-07
Hs11321579 [Z] KOG0161 Myosin class II heavy chain 49 3e-06
At3g52300 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/... 49 5e-06
>YKL016c [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 174
Score = 280 bits (716), Expect = 7e-76
Identities = 136/174 (78%), Positives = 156/174 (89%)
Query: 1 MSLAKSAANKLDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYR 60
MSLAKSAANKLDWAKVISSL++TG TATQLSSFKKRNDEARRQLLELQSQPT VDFSHYR
Sbjct: 1 MSLAKSAANKLDWAKVISSLRITGSTATQLSSFKKRNDEARRQLLELQSQPTEVDFSHYR 60
Query: 61 SVLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEAFESQAIENAAETEKLVAQELKDLKE 120
SVLKNT V+DKIE + K YKPV +D SKQL IE+FE A+ NA ETE LV++ELKDL+
Sbjct: 61 SVLKNTSVIDKIESYVKQYKPVKIDASKQLQVIESFEKHAMTNAKETESLVSKELKDLQS 120
Query: 121 TLNNIESARPFDQLTVDELTKARPEIDAKVEEMVKKGRWDVPGYKEKFGDLTIM 174
TL+NI+SARPFD+LTVD+LTK +PEIDAKVEEMVKKG+WDVPGYK++FG+L +M
Sbjct: 121 TLDNIQSARPFDELTVDDLTKIKPEIDAKVEEMVKKGKWDVPGYKDRFGNLNVM 174
>SPBC29A10.13 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 175
Score = 171 bits (434), Expect = 4e-43
Identities = 87/175 (49%), Positives = 125/175 (70%), Gaps = 1/175 (0%)
Query: 1 MSLAKSAANK-LDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHY 59
MS SAA K +DWA V S LKL TA+ +++F+ R+ +A +L L+ Q T+VDF+ Y
Sbjct: 1 MSKVASAAGKAIDWASVASKLKLDAATASAIANFRSRHAQAVAKLGTLREQATTVDFATY 60
Query: 60 RSVLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEAFESQAIENAAETEKLVAQELKDLK 119
RSVL N E+V++IE KS+KPV +D++ QL I AFE++A E A + +LV EL++L
Sbjct: 61 RSVLANKEIVNRIESSMKSFKPVKIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLS 120
Query: 120 ETLNNIESARPFDQLTVDELTKARPEIDAKVEEMVKKGRWDVPGYKEKFGDLTIM 174
TL NIE ARP +++T++++ +A PEI+ VE MV KG+W +PGY+EKFGDL+IM
Sbjct: 121 ATLKNIEQARPTEEITIEDMKQAVPEIEKIVETMVTKGKWVIPGYREKFGDLSIM 175
>Hs5453559 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 161
Score = 62.0 bits (149), Expect = 4e-10
Identities = 36/145 (24%), Positives = 73/145 (49%), Gaps = 3/145 (2%)
Query: 1 MSLAKSAANKLDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYR 60
M+ K A +DW + K SS K N+ +L L P ++D+++Y+
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIA--SSLKSWNETLTSRLAALPENPPAIDWAYYK 58
Query: 61 SVLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEAFESQAIENAAETEKLVAQELKDLKE 120
+ + +VD E+ + + K V V K + ++A E + +++ AE L + + ++
Sbjct: 59 ANVAKAGLVDDFEKKFNALK-VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEK 117
Query: 121 TLNNIESARPFDQLTVDELTKARPE 145
+ +++ PFDQ+T+++L +A PE
Sbjct: 118 EMEKMKNLIPFDQMTIEDLNEAFPE 142
>Hs17452829 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 144
Score = 52.4 bits (124), Expect = 3e-07
Identities = 39/147 (26%), Positives = 71/147 (47%), Gaps = 7/147 (4%)
Query: 1 MSLAKSAANKLDWAKVISSLKLTGKT-ATQLSSFKKRNDEARRQLLELQSQPTSVDFSHY 59
M+ K A +DW S+ K A L+S+ N+ +L L S+D+++Y
Sbjct: 1 MAGQKLALKIIDWVTSWESISRNQKAIANSLTSW---NEILTSRLAILPENKPSIDWTYY 57
Query: 60 RSVLKNTEVVDKIEQFYKSYK-PVSVDVSKQLSTIEAFESQAIENAAETEKLVAQELKDL 118
++ + +VD E+ + + K PV D K + ++A E + ++ AE L +
Sbjct: 58 KASVAKAGLVDDFEKKFNALKFPVPED--KYTAQVDAEEKEDVKTCAEWMSLSKARIGQY 115
Query: 119 KETLNNIESARPFDQLTVDELTKARPE 145
++ L + + PFDQ T ++L +A PE
Sbjct: 116 EKQLEKMRNLIPFDQTTTEDLNEAFPE 142
>7300478 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 178
Score = 50.8 bits (120), Expect = 9e-07
Identities = 36/172 (20%), Positives = 85/172 (48%), Gaps = 10/172 (5%)
Query: 1 MSLAKSAANKLDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYR 60
M+ + A + ++W+ + + K++ +FK ++D R +L P +D+++Y+
Sbjct: 1 MAARRIAQSSINWSALAERVPANQKSS--FGAFKTKSDIYVRAVLANPECPPQIDWANYK 58
Query: 61 SVLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEAFESQAIENAAETEKLVAQELKDLKE 120
++ +VD ++ Y++ K V K S ++A + +K Q +++ ++
Sbjct: 59 KLVPVAGLVDSFQKQYEALK-VPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQK 117
Query: 121 TLNNIESARPFDQLTVDELTKARPEIDAKVEEMVKKGRW-----DVPGYKEK 167
+ +++S P+DQ+T+++ A P D+ ++ + K W + GYK K
Sbjct: 118 EIAHLKSLLPYDQMTMEDYRDAFP--DSALDPLNKPTFWPHTPEEQVGYKSK 167
>Hs11321579 [Z] KOG0161 Myosin class II heavy chain
Length = 1938
Score = 49.3 bits (116), Expect = 3e-06
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 30 LSSFKKRNDEARRQLLELQSQPTSVDFSHYRSVLKNTEVVDKIEQFYKSYKPVSVDVSKQ 89
L+ +K++ DE++ +L Q + S+ ++ EVVD++E + K + ++S
Sbjct: 1457 LAEWKQKLDESQAELEAAQKESRSLSTELFKMRNAYEEVVDQLETLRRENKNLQEEISDL 1516
Query: 90 LSTIEAFESQAIENAAETEKLVAQELKDLKETLNNIESARPFDQLTV----DELTKARPE 145
I A + ++ A +T+KLV QE DL+ L +E + ++ + EL++ + E
Sbjct: 1517 TEQI-AETGKNLQEAEKTKKLVEQEKSDLQVALEEVEGSLEHEESKILRVQLELSQVKSE 1575
Query: 146 IDAKVEE 152
+D KV E
Sbjct: 1576 LDRKVIE 1582
>At3g52300 [C] KOG3366 Mitochondrial F1F0-ATP synthase subunit d/ATP7
Length = 168
Score = 48.5 bits (114), Expect = 5e-06
Identities = 34/163 (20%), Positives = 75/163 (45%), Gaps = 13/163 (7%)
Query: 3 LAKSAANKLDWAKVISSLKLTGKTATQLSSFKKRNDEARRQL-LELQSQPTSVDFSHYRS 61
+A A+ +DW + L +T + + S+ ++ DE QL + +P +D+ +YR
Sbjct: 11 VAFKASRTIDWDGMAKVL-VTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRK 69
Query: 62 VLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEA-----FESQAIENAAETEKLVAQELK 116
+ +VDK ++ Y S +++ K + + F++ +E +K + + +
Sbjct: 70 GI-GAGIVDKYKEAYDS-----IEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESER 123
Query: 117 DLKETLNNIESARPFDQLTVDELTKARPEIDAKVEEMVKKGRW 159
KE + E ++ +T DE + PE+ K ++ ++ W
Sbjct: 124 LEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNW 166
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.126 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,770,622
Number of Sequences: 60738
Number of extensions: 316936
Number of successful extensions: 1648
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 9
length of query: 174
length of database: 30,389,216
effective HSP length: 99
effective length of query: 75
effective length of database: 24,376,154
effective search space: 1828211550
effective search space used: 1828211550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)