ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4730 good Z KOG1876 Cytoskeleton Actin-related protein Arp2/3 complex, subunit ARPC4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4730 1626594 1626082 -171
(171 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL013c [Z] KOG1876 Actin-related protein Arp2/3 complex subunit... 296 1e-80
CE28899 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit... 223 1e-58
Hs5031595 [Z] KOG1876 Actin-related protein Arp2/3 complex subun... 222 2e-58
7297077 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit... 215 3e-56
SPAC6G9.07c [Z] KOG1876 Actin-related protein Arp2/3 complex sub... 208 3e-54
At4g14150_3 [Z] KOG1876 Actin-related protein Arp2/3 complex sub... 96 2e-20
>YKL013c [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 171
Score = 296 bits (757), Expect = 1e-80
Identities = 149/171 (87%), Positives = 163/171 (95%)
Query: 1 MSQSLRPYLTAVRYSLQAALNLSNFSSQEVERHNRPEVEVDNTSAELLLQPMHIARNEHE 60
MSQSLRPYLTAVRYSL+AAL LSNFSSQEVERHNRPEVEV NTSAELLLQPMHI+RNE+E
Sbjct: 1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60
Query: 61 QVLIEPSVNSVRMSIKVKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGYSISFLIT 120
QVLIEPSVNSVRMS+ VKQADEIEQILVHKFT FLEQRAE FY+LRRVP+PGYSISFLIT
Sbjct: 61 QVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLIT 120
Query: 121 NKHTETMITEKLIEFIIDFMEEVDKEISEMKLFLNARARFAAEAYLEQFVY 171
NKHTE+M T KL++FII+FME+VDKEISE+KLFLNARARF AEAYL++FVY
Sbjct: 121 NKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEFVY 171
>CE28899 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 169
Score = 223 bits (567), Expect = 1e-58
Identities = 113/169 (66%), Positives = 141/169 (82%), Gaps = 1/169 (0%)
Query: 1 MSQSLRPYLTAVRYSLQAALNLSNFSSQEVERHNRPEVEVDNTSAELLLQPMHIARNEHE 60
MS +L+PYL AVR++LQAAL L FSSQ VERHN+PEVEV TS ELL+ P+ +ARN+ E
Sbjct: 1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQ-TSKELLMTPVVVARNKQE 59
Query: 61 QVLIEPSVNSVRMSIKVKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGYSISFLIT 120
+VLIEPSVNSVR+SI +KQ+DEIE+IL HKFT F+ QRA+NF+VLRR P+PGY ISFLIT
Sbjct: 60 RVLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLIT 119
Query: 121 NKHTETMITEKLIEFIIDFMEEVDKEISEMKLFLNARARFAAEAYLEQF 169
HTE M KL++F++ FM+E+DKEISEMKL LNARAR +AE +L++F
Sbjct: 120 ASHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168
>Hs5031595 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 168
Score = 222 bits (565), Expect = 2e-58
Identities = 116/169 (68%), Positives = 138/169 (81%), Gaps = 1/169 (0%)
Query: 1 MSQSLRPYLTAVRYSLQAALNLSNFSSQEVERHNRPEVEVDNTSAELLLQPMHIARNEHE 60
M+ +LRPYL+AVR +LQAAL L NFSSQ VERHN+PEVEV +S ELLLQP+ I+RNE E
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEV-RSSKELLLQPVTISRNEKE 59
Query: 61 QVLIEPSVNSVRMSIKVKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGYSISFLIT 120
+VLIE S+NSVR+SI VKQADEIE+IL HKF F+ RAENF++LRR PV GY ISFLIT
Sbjct: 60 KVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLIT 119
Query: 121 NKHTETMITEKLIEFIIDFMEEVDKEISEMKLFLNARARFAAEAYLEQF 169
N HTE M KL++F+I FMEE+DKEISEMKL +NARAR AE +L+ F
Sbjct: 120 NFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>7297077 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 168
Score = 215 bits (547), Expect = 3e-56
Identities = 109/169 (64%), Positives = 139/169 (81%), Gaps = 1/169 (0%)
Query: 1 MSQSLRPYLTAVRYSLQAALNLSNFSSQEVERHNRPEVEVDNTSAELLLQPMHIARNEHE 60
M+ +L+PYLTAVR+SL AA+ L +F SQ VERHN+PEVE+ + S EL+L P+ ++RNE E
Sbjct: 1 MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICS-SKELVLTPVVVSRNERE 59
Query: 61 QVLIEPSVNSVRMSIKVKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGYSISFLIT 120
+VLIEPS+NSVR+SI VKQADEIE+IL HKFT F+ +RAE+F +LRR P+ GY ISFLIT
Sbjct: 60 KVLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAESFVILRRKPIEGYDISFLIT 119
Query: 121 NKHTETMITEKLIEFIIDFMEEVDKEISEMKLFLNARARFAAEAYLEQF 169
N HTE M KL++F+I FMEE+DKEISEMKL +NARAR AE +L++F
Sbjct: 120 NFHTEQMYKHKLVDFVISFMEEIDKEISEMKLAVNARARTCAEEFLKRF 168
>SPAC6G9.07c [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 168
Score = 208 bits (530), Expect = 3e-54
Identities = 110/169 (65%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Query: 1 MSQSLRPYLTAVRYSLQAALNLSNFSSQEVERHNRPEVEVDNTSAELLLQPMHIARNEHE 60
MS +LRPYL AVR +L A+L L FSS+ VER ++PEVEV S E+LL+P+ ++RNE E
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGR-SPEILLKPLVVSRNEQE 59
Query: 61 QVLIEPSVNSVRMSIKVKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGYSISFLIT 120
Q LIE SVNSVR SI++KQ DEIE+ILV KF FL RAE+F++LRR PV GY ISFLIT
Sbjct: 60 QCLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLIT 119
Query: 121 NKHTETMITEKLIEFIIDFMEEVDKEISEMKLFLNARARFAAEAYLEQF 169
N HTE M+ KL++FII+FMEEVD EISEMKLFLN RAR AE YL F
Sbjct: 120 NYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>At4g14150_3 [Z] KOG1876 Actin-related protein Arp2/3 complex subunit ARPC4
Length = 253
Score = 95.9 bits (237), Expect = 2e-20
Identities = 57/120 (47%), Positives = 71/120 (58%), Gaps = 7/120 (5%)
Query: 20 LNLSNFSSQEVERHNRPEVEVDNTS---AELLLQPMHIARNEHEQVLIEPSVNSVRMSIK 76
L L NF QEVERHN+PEVE+ S + + I RNE E+ LIE S+NS+R+S+K
Sbjct: 1 LYLQNFPCQEVERHNKPEVELKYVSFSQEDACENGVLICRNEAEKCLIETSINSLRISLK 60
Query: 77 VKQADEIEQILVHKFTSFLEQRAENFYVLRRVPVPGY----SISFLITNKHTETMITEKL 132
VKQADE+E IL KF FL RAE F VLRR PV + I LI ++ K+
Sbjct: 61 VKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQAFFRFRMIDSLIKKNDNNVVVNTKM 120
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.133 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,570,667
Number of Sequences: 60738
Number of extensions: 316430
Number of successful extensions: 1073
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 6
length of query: 171
length of database: 30,389,216
effective HSP length: 99
effective length of query: 72
effective length of database: 24,376,154
effective search space: 1755083088
effective search space used: 1755083088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)