ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV4776    suspect: LH   C     KOG1352  Energy production and conversion                               Vacuolar H+-ATPase V1 sector, subunit A

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV4776 1640343 1639936 -136 
         (136 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL185w [C] KOG1352 Vacuolar H+-ATPase V1 sector subunit A             52   3e-07

>YDL185w [C] KOG1352 Vacuolar H+-ATPase V1 sector subunit A
          Length = 1071

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 27/82 (32%), Positives = 47/82 (56%), Gaps = 1/82 (1%)

Query: 4   AAGTLVFMADGSLKPIEDVTIEEEVLSSDGSANFVQSIINCHERMFEITQLSPHRAHKNK 63
           A GT V MADGS++ IE++ +  +V+  DG    V  +    E M+ + Q S HRAHK+ 
Sbjct: 286 AKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKS- 344

Query: 64  DVNFASFDMIRLRCSGSQALML 85
           D +    ++++  C+ +  L++
Sbjct: 345 DSSREVPELLKFTCNATHELVV 366


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.325    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,215,864
Number of Sequences: 60738
Number of extensions: 252001
Number of successful extensions: 730
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 1
length of query: 136
length of database: 30,389,216
effective HSP length: 95
effective length of query: 41
effective length of database: 24,619,106
effective search space: 1009383346
effective search space used: 1009383346
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)