ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4788 suspect: HSP R KOG0381 General function prediction only HMG box-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4788 1643948 1642557 -464
(464 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL032c [R] KOG0381 HMG box-containing protein 242 1e-63
YMR072w [R] KOG0381 HMG box-containing protein 127 4e-29
Hs4504425 [R] KOG0381 HMG box-containing protein 74 4e-13
Hs20546564 [R] KOG0381 HMG box-containing protein 73 1e-12
At4g23800 [R] KOG0381 HMG box-containing protein 73 1e-12
Hs11321591 [R] KOG0381 HMG box-containing protein 71 3e-12
Hs4885421 [R] KOG0381 HMG box-containing protein 70 7e-12
At4g11080 [R] KOG0381 HMG box-containing protein 69 1e-11
7293212 [R] KOG0381 HMG box-containing protein 62 1e-09
CE28234 [R] KOG0381 HMG box-containing protein 59 1e-08
CE28233 [R] KOG0381 HMG box-containing protein 59 2e-08
CE26923 [R] KOG0381 HMG box-containing protein 59 2e-08
Hs7657671 [R] KOG0381 HMG box-containing protein 58 3e-08
Hs20539802 [R] KOG0381 HMG box-containing protein 58 3e-08
Hs4507401_2 [R] KOG0381 HMG box-containing protein 57 4e-08
Hs22055439 [R] KOG0381 HMG box-containing protein 56 1e-07
ECU06g1270 [R] KOG0381 HMG box-containing protein 55 2e-07
SPAC57A10.09c [R] KOG0381 HMG box-containing protein 55 2e-07
At3g28730 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 55 2e-07
At1g20690_2 [R] KOG0381 HMG box-containing protein 54 4e-07
Hs21624652 [R] KOG0381 HMG box-containing protein 54 6e-07
Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 52 1e-06
Hs20552486 [R] KOG0381 HMG box-containing protein 52 2e-06
CE28487 [K] KOG0528 HMG-box transcription factor SOX5 52 2e-06
At5g23420 [R] KOG0381 HMG box-containing protein 52 2e-06
Hs17442539 [R] KOG0381 HMG box-containing protein 51 3e-06
YDR174w [R] KOG0381 HMG box-containing protein 51 4e-06
CE01414 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 51 4e-06
Hs5032109 [K] KOG0528 HMG-box transcription factor SOX5 50 5e-06
YPR052c [R] KOG0381 HMG box-containing protein 50 7e-06
>YKL032c [R] KOG0381 HMG box-containing protein
Length = 597
Score = 242 bits (617), Expect = 1e-63
Identities = 110/155 (70%), Positives = 139/155 (88%)
Query: 294 PPVKKLSITQTRIAKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSA 353
P VKKLS TQ+RI +RK+LKKQGPKRPSSAYFLFS+SIR ELL+Q+P+AKVPELSKL+SA
Sbjct: 338 PVVKKLSSTQSRIERRKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASA 397
Query: 354 KWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQP 413
+WK +TD++KKPF+++F+TNWEKYR+ R YE+TLPPKRPSGPF+QFT++IRP +V+E P
Sbjct: 398 RWKELTDDQKKPFYEEFRTNWEKYRVVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENP 457
Query: 414 DKTLIEITKLIGEKWRELDGPSKQKYTDSYKLKLK 448
DK LIEITK+IGE+WRELD K +YT++YK +LK
Sbjct: 458 DKGLIEITKIIGERWRELDPAKKAEYTETYKKRLK 492
>YMR072w [R] KOG0381 HMG box-containing protein
Length = 183
Score = 127 bits (319), Expect = 4e-29
Identities = 56/154 (36%), Positives = 101/154 (65%), Gaps = 4/154 (2%)
Query: 295 PVKKLSITQTRIAKRKELK----KQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKL 350
P+ L+ T + +KR +L+ KQGPKRP+SAYFL+ R + +K+ P + E+SK+
Sbjct: 17 PLFNLASTLLKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKI 76
Query: 351 SSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEETLPPKRPSGPFLQFTKDIRPLLVE 410
+ KW+++ + K+ + + K + +Y+ A+K+++E LPPK+P+GPF+++ ++R +
Sbjct: 77 AGEKWQNLEADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFA 136
Query: 411 EQPDKTLIEITKLIGEKWRELDGPSKQKYTDSYK 444
+ PDK+ +++ K+IG+KW+ LD K KY YK
Sbjct: 137 QHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYK 170
>Hs4504425 [R] KOG0381 HMG box-containing protein
Length = 215
Score = 74.3 bits (181), Expect = 4e-13
Identities = 50/152 (32%), Positives = 73/152 (47%), Gaps = 17/152 (11%)
Query: 314 KQGPKRPS---SAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPFFD 368
K PK+P S+Y F + R E K++PDA V E SK S +WK+M+ +EK F D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 369 QFKTNWEKYRI-----------ARKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTL 417
K + +Y +KK+++ PKRP F F + RP + E P ++
Sbjct: 63 MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 122
Query: 418 IEITKLIGEKWRELDGPSKQKY-TDSYKLKLK 448
++ K +GE W KQ Y + KLK K
Sbjct: 123 GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
>Hs20546564 [R] KOG0381 HMG box-containing protein
Length = 173
Score = 72.8 bits (177), Expect = 1e-12
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 312 LKKQGPKRPS---SAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFD 368
+ K PK+P SAY F + R E K+ P E SK S +WK+M+ +EK F +
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDE 59
Query: 369 QFKTNWEKYRIAR---------KKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIE 419
KT +K R KK ++ PKRP F F+ +IRP + P ++ +
Sbjct: 60 MAKT--DKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGD 117
Query: 420 ITKLIGEKWRELDGPSKQKY-TDSYKLKLK 448
+ K +GE W L+ KQ Y T + KLK K
Sbjct: 118 VAKKLGEMWNNLNDSEKQPYITKTAKLKEK 147
Score = 53.9 bits (128), Expect = 5e-07
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 309 RKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFD 368
+K+ PKRP S +FLFS IRP++ P + +++K W ++ D EK+P+
Sbjct: 80 KKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 139
Query: 369 QFKTNWEKYR--IARKKYEETLPPKRPSG 395
+ EKY +A K + +P G
Sbjct: 140 KTAKLKEKYEKDVADSKSKGKFDGSKPKG 168
>At4g23800 [R] KOG0381 HMG box-containing protein
Length = 456
Score = 72.8 bits (177), Expect = 1e-12
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 49/187 (26%)
Query: 300 SITQTRIAKRKELKKQG---PKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWK 356
S+TQ K + KK+ KRPSS+Y L+ E+ K+ P+A E S + AKWK
Sbjct: 118 SLTQAEQEKANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWK 177
Query: 357 SMTDEEKKPFFDQFKTNWEKY--------------------------------------- 377
S++ E+KKP+ ++++ E Y
Sbjct: 178 SLSAEDKKPYEERYQVEKEAYLQVIAKEKREKEAMKLLEDDQKQRTAMELLDQYLNFVQE 237
Query: 378 -----RIARKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRELD 432
+ KK ++ L PK P FL + + R L EE +K+++E+ K+ GE+W+ L
Sbjct: 238 AEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALREE--NKSVVEVAKITGEEWKNLS 295
Query: 433 GPSKQKY 439
K Y
Sbjct: 296 DKKKAPY 302
Score = 62.4 bits (150), Expect = 1e-09
Identities = 45/184 (24%), Positives = 78/184 (41%), Gaps = 55/184 (29%)
Query: 309 RKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPF-- 366
+KE PK P SA+ +++ R L ++ + V E++K++ +WK+++D++K P+
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREE--NKSVVEVAKITGEEWKNLSDKKKAPYEK 304
Query: 367 ------------FDQFKTNWEKYRIARKKYEETL-------------------------- 388
+++K E+ +++KK EE L
Sbjct: 305 VAKKNKETYLQAMEEYKRTKEEEALSQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKEK 364
Query: 389 -------------PPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRELDGPS 435
PK+P+ + F+KD R L EE+P +T LI KW+EL
Sbjct: 365 ATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEE 424
Query: 436 KQKY 439
KQ Y
Sbjct: 425 KQVY 428
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 296 VKKLSITQTRIAKRKELKKQG--------PKRPSSAYFLFSISIRPELLKQYPDAKVPEL 347
+KK T I K K KK+ PK+P+S+YFLFS R +L ++ P +
Sbjct: 350 LKKKEKTDNLIKKEKATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATV 409
Query: 348 SKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEE 386
+ L S KWK +++EEK+ + + E Y+ + Y +
Sbjct: 410 TALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEAYNK 448
>Hs11321591 [R] KOG0381 HMG box-containing protein
Length = 209
Score = 71.2 bits (173), Expect = 3e-12
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 317 PKRPSSAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPFFDQFKTNW 374
P+ S+Y F + R E K++PD+ V E SK S +WK+M+ +EK F D K++
Sbjct: 9 PRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDK 68
Query: 375 EKYRIARKKY-----------EETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKL 423
+Y K Y ++ PKRP F F + RP + E P ++ + K
Sbjct: 69 ARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKK 128
Query: 424 IGEKWRELDGPSKQKYTD-SYKLKLK 448
+GE W E KQ Y + KLK K
Sbjct: 129 LGEMWSEQSAKDKQPYEQKAAKLKEK 154
>Hs4885421 [R] KOG0381 HMG box-containing protein
Length = 200
Score = 70.1 bits (170), Expect = 7e-12
Identities = 48/152 (31%), Positives = 73/152 (47%), Gaps = 15/152 (9%)
Query: 312 LKKQGPKRP---SSAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPF 366
+ K PK+P +SAY F + R E K+ P+ V E SK S +WK+++ +EK F
Sbjct: 1 MAKGDPKKPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKF 60
Query: 367 FDQFKTNWEKYRIARKKY---------EETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTL 417
+ K + +Y K Y ++ PKRP F F + RP + P ++
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 120
Query: 418 IEITKLIGEKWRELDGPSKQKY-TDSYKLKLK 448
++ K +GE W L+ KQ Y T + KLK K
Sbjct: 121 GDVAKKLGEMWNNLNDSEKQPYITKAAKLKEK 152
>At4g11080 [R] KOG0381 HMG box-containing protein
Length = 446
Score = 68.9 bits (167), Expect = 1e-11
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 49/192 (25%)
Query: 300 SITQTRIAKRKELKKQG---PKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWK 356
S+ QT K+ + KK+ KRPS+ Y L+ E+ KQ P+A E S + AKWK
Sbjct: 109 SLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWK 168
Query: 357 SMTDEEKKPFFDQFKTNWEKY--------------------------------------- 377
++ EEKKP+ ++++ + E Y
Sbjct: 169 GISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLDDEQKQKTAMELLDQYLHFVQE 228
Query: 378 -----RIARKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRELD 432
+ KK ++ L PK+P +L + + R L E +K++IE+ K+ GE+W+ L
Sbjct: 229 AEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGE--NKSVIEVAKMAGEEWKNLS 286
Query: 433 GPSKQKYTDSYK 444
K Y K
Sbjct: 287 EEKKAPYDQMAK 298
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/188 (24%), Positives = 74/188 (38%), Gaps = 58/188 (30%)
Query: 308 KRKELKKQ-GPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPF 366
K K++K PK+P SAY +++ R L + + V E++K++ +WK++++E+K P+
Sbjct: 236 KAKKIKDPLKPKQPISAYLIYANERRAALKGE--NKSVIEVAKMAGEEWKNLSEEKKAPY 293
Query: 367 FDQFKTNWEKY--------------RIARKKYEETL------------------------ 388
K N E Y +++KK EE
Sbjct: 294 DQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKK 353
Query: 389 -----------------PPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWREL 431
PK+P+ + F KD R ++EE P +T I KW EL
Sbjct: 354 TKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMEL 413
Query: 432 DGPSKQKY 439
KQ Y
Sbjct: 414 GEEEKQVY 421
>7293212 [R] KOG0381 HMG box-containing protein
Length = 328
Score = 62.4 bits (150), Expect = 1e-09
Identities = 41/142 (28%), Positives = 66/142 (45%), Gaps = 19/142 (13%)
Query: 317 PKRPSSAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPFFDQFKTNW 374
P+ +AY F + R E K++PD V E S+ + +WK+M D+EKK F + + +
Sbjct: 114 PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK 173
Query: 375 EKYRIA-----------------RKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTL 417
++Y RK+ ++ PKR F F D R + P+ +
Sbjct: 174 QRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV 233
Query: 418 IEITKLIGEKWRELDGPSKQKY 439
+I K +G KW ++D KQKY
Sbjct: 234 GDIAKELGRKWSDVDPEVKQKY 255
>CE28234 [R] KOG0381 HMG box-containing protein
Length = 233
Score = 59.3 bits (142), Expect = 1e-08
Identities = 38/148 (25%), Positives = 72/148 (47%), Gaps = 15/148 (10%)
Query: 307 AKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPD--AKVPELSKLSSAKWKSMTDEEKK 364
A +++ K + +S Y F E K+YP+ +V E+SK S KWK+M D+EK+
Sbjct: 35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKR 94
Query: 365 PFFDQFKTNWEKY-------------RIARKKYEETLPPKRPSGPFLQFTKDIRPLLVEE 411
F++ + + E+Y R ++ ++ PKR F +++D RP +
Sbjct: 95 RFYELAQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAG 154
Query: 412 QPDKTLIEITKLIGEKWRELDGPSKQKY 439
PD + ++ + +G+ W+ + +K Y
Sbjct: 155 HPDWKVGQVAQELGKMWKLVPQETKDMY 182
>CE28233 [R] KOG0381 HMG box-containing protein
Length = 234
Score = 58.9 bits (141), Expect = 2e-08
Identities = 43/177 (24%), Positives = 80/177 (44%), Gaps = 23/177 (12%)
Query: 280 SASPSTNGSGKTAQPPVKKLSITQTRIAKRKELKKQGPKRPSSAYFLFSISIRPELLKQY 339
S+SP+ S + P T +++ K + +S Y F E K+Y
Sbjct: 13 SSSPTLYQSHQLPNPSATMYQATP------RDMGKPPVRGKTSPYGFFVKMCYEEHKKKY 66
Query: 340 PD--AKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKY---------------RIARK 382
P+ +V E+SK S KWK+M D+EK+ F++ + + E+Y R ++
Sbjct: 67 PNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKR 126
Query: 383 KYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRELDGPSKQKY 439
++ PKR F +++D RP + PD + ++ + +G+ W+ + +K Y
Sbjct: 127 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMY 183
>CE26923 [R] KOG0381 HMG box-containing protein
Length = 235
Score = 58.5 bits (140), Expect = 2e-08
Identities = 38/150 (25%), Positives = 72/150 (47%), Gaps = 17/150 (11%)
Query: 307 AKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPD--AKVPELSKLSSAKWKSMTDEEKK 364
A +++ K + +S Y F E K+YP+ +V E+SK S KWK+M D+EK+
Sbjct: 35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKR 94
Query: 365 PFFDQFKTNWEKY---------------RIARKKYEETLPPKRPSGPFLQFTKDIRPLLV 409
F++ + + E+Y R ++ ++ PKR F +++D RP +
Sbjct: 95 RFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQ 154
Query: 410 EEQPDKTLIEITKLIGEKWRELDGPSKQKY 439
PD + ++ + +G+ W+ + +K Y
Sbjct: 155 AGHPDWKVGQVAQELGKMWKLVPQETKDMY 184
>Hs7657671 [R] KOG0381 HMG box-containing protein
Length = 764
Score = 58.2 bits (139), Expect = 3e-08
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 308 KRKELKKQG--PKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKP 365
K K+LKK PK+P + YF F + R + K +P+ +L+K+ S K+K + +++K
Sbjct: 101 KGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMK 160
Query: 366 FFDQFKTNWEKYRIARKKYEETLP-----------PKRPSGPFLQFTKDIRPLLVEEQPD 414
+ F+ +++ ++ E P P++P P + + + ++ +PD
Sbjct: 161 YIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPD 220
Query: 415 KTLIEITKLIGEKWRELDGPSKQKY 439
T E+ +G++W +L + K+
Sbjct: 221 ATTKEVKDSLGKQWSQLSDKKRLKW 245
>Hs20539802 [R] KOG0381 HMG box-containing protein
Length = 140
Score = 58.2 bits (139), Expect = 3e-08
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 322 SAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRI 379
SAY + + R E K+ P+ V E SK S +WK+M+ ++K F + K + +Y
Sbjct: 2 SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
Query: 380 ARKKY---------EETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRE 430
K Y ++ KRP F F ++ P + P ++ ++ K +GE W
Sbjct: 62 EMKDYGPAKGAKKKKDPNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNN 121
Query: 431 LDGPSKQKY-TDSYKLKLK 448
L+ KQ Y T + KLK K
Sbjct: 122 LNDSEKQPYITKAAKLKEK 140
>Hs4507401_2 [R] KOG0381 HMG box-containing protein
Length = 213
Score = 57.4 bits (137), Expect = 4e-08
Identities = 35/141 (24%), Positives = 64/141 (44%), Gaps = 17/141 (12%)
Query: 317 PKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEK 376
PK+P S+Y FS P Q PDAK EL + + +W+ + D +KK + D ++ W+
Sbjct: 17 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 76
Query: 377 YRIARKKYEETLPPKRPSGPFLQFTKDI-------------RPLLVEEQPDKTLIEITKL 423
Y+ +++E L P + + K+I + L + +P +
Sbjct: 77 YKEEISRFKEQLTPSQ----IMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVY 132
Query: 424 IGEKWRELDGPSKQKYTDSYK 444
+ E+++E G S Q+ + K
Sbjct: 133 VAERFQEAKGDSPQEKLKTVK 153
>Hs22055439 [R] KOG0381 HMG box-containing protein
Length = 168
Score = 55.8 bits (133), Expect = 1e-07
Identities = 34/115 (29%), Positives = 53/115 (45%), Gaps = 12/115 (10%)
Query: 346 ELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRI-----------ARKKYEETLPPKRPS 394
E SK S +WK+++ ++K F D K + Y +KK+++ PKRP
Sbjct: 8 EFSKKCSERWKTISAKDKGKFQDMAKVDKAHYEREMKTYIPPKGETKKKFKDPNAPKRPP 67
Query: 395 GPFLQFTKDIRPLLVEEQPDKTLIEITKLIGEKWRELDGPSKQKY-TDSYKLKLK 448
F F + RP + E P ++ ++ K +GE W KQ Y + KLK K
Sbjct: 68 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 122
>ECU06g1270 [R] KOG0381 HMG box-containing protein
Length = 201
Score = 55.5 bits (132), Expect = 2e-07
Identities = 41/160 (25%), Positives = 71/160 (43%), Gaps = 27/160 (16%)
Query: 302 TQTRIAKRKELKKQGPKRPSSAYFLFSISIRP--ELLKQYPDAKVPELSKLSSAKWKSMT 359
++T + +RK+ PK+P S YF+F R E L + P V + + S WK ++
Sbjct: 31 SKTAVKRRKD--PNAPKKPMSGYFIFGQEQRKKNEELSRLP---VADQGRAISEMWKKLS 85
Query: 360 DEEKKPFFDQFKTNWEKYRIARKKY---------------EETLPPKRPSG-----PFLQ 399
DEE++ + E Y+ ++Y +E K+ G + +
Sbjct: 86 DEEREEYNKISNRERELYQARIEEYKKSDEYHNHLEKVAADEAAAGKKKKGIKKVTGYNE 145
Query: 400 FTKDIRPLLVEEQPDKTLIEITKLIGEKWRELDGPSKQKY 439
F K +R + EE P T++E T + ++W+EL K Y
Sbjct: 146 FFKAVRKAVSEENPSFTMMETTSAVAKRWKELSEDEKAVY 185
>SPAC57A10.09c [R] KOG0381 HMG box-containing protein
Length = 108
Score = 55.1 bits (131), Expect = 2e-07
Identities = 30/92 (32%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Query: 305 RIAKRKELKKQG-PKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEK 363
R AK K PKR SA+ FSI R ++ PDA +L L +WK +T E+
Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTER 62
Query: 364 KPFFDQFKTNWEKYRIARKKYEETLPPKRPSG 395
+P+ ++ + + E+Y RK+Y+ L +G
Sbjct: 63 EPYEEKARQDKERYERERKEYDTKLANGEKTG 94
>At3g28730 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 646
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 275 KRSAGSASPSTNGSGKTAQPPVKKLSITQTRIAKRKELKKQ----GPKRPSSAYFLFSIS 330
K + P S PP +K +KRK+ KK+ PKR S + FS
Sbjct: 516 KEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQM 575
Query: 331 IRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEETLPP 390
R + K++P E+ K+ KW+ M+ ++K+P+ + + + ++Y+ Y+ P
Sbjct: 576 ERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPM 635
Query: 391 KRPSG 395
SG
Sbjct: 636 NVDSG 640
>At1g20690_2 [R] KOG0381 HMG box-containing protein
Length = 249
Score = 54.3 bits (129), Expect = 4e-07
Identities = 38/107 (35%), Positives = 55/107 (50%), Gaps = 7/107 (6%)
Query: 287 GSGKTAQPPVKKLSITQ--TRIAKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAK- 343
G+ A+ KLS+T+ + AK PKRPSSA+F+F R +++P K
Sbjct: 111 GAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 170
Query: 344 VPELSKLSSAKWKSMTDEEKKPFF---DQFKTNWEK-YRIARKKYEE 386
V + K KWKS++D EK P+ D+ K +EK + KK EE
Sbjct: 171 VAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEE 217
>Hs21624652 [R] KOG0381 HMG box-containing protein
Length = 186
Score = 53.5 bits (127), Expect = 6e-07
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 317 PKRPSSAYFLFSISIRPELLKQYPDAKV--PELSKLSSAKWKSMTDEEKKPFFDQFKTNW 374
PK S+Y F ++ R + +Q P V E S+ S KW+S++ EK + K +
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 375 EKYRIA-------RKKYEETLP--PKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIG 425
+Y+ RKK + P P+RP FL F +D L E P+ +++++ K G
Sbjct: 69 ARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATG 128
Query: 426 EKWRELDGPSKQKY 439
+ W K Y
Sbjct: 129 KMWSTATDLEKHPY 142
>Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 709
Score = 52.4 bits (124), Expect = 1e-06
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 277 SAGSASPSTNGSGKTAQPPVKKLSITQTRIAKRKELKKQ-----------GPKRPSSAYF 325
S SAS S+N G + + K+ + + ++AK ++ +K+ PKRP SAY
Sbjct: 497 SNASASSSSN-EGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYM 555
Query: 326 LFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYE 385
L+ + R ++ +P + +LSK + WK M+ E+K+ + + + Y A K+YE
Sbjct: 556 LWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
>Hs20552486 [R] KOG0381 HMG box-containing protein
Length = 211
Score = 51.6 bits (122), Expect = 2e-06
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 317 PKRPSSAYFLFSISIRPELLKQYPDAKVP--ELSKLSSAKWKSMTDEEKKPFFDQFKTNW 374
PK SAY F+ + R E K+ P+ V E SK S K K+M+ +EK F + K +
Sbjct: 9 PKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVDK 68
Query: 375 EKYRIARK--------KYEETLPPKRPSGPFLQFTKDIRPLLVEEQPDKTLIEITKLIGE 426
Y K K ++ KRP F F + P + P ++ ++ K +GE
Sbjct: 69 VHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGE 128
Query: 427 KWRELDGPSKQKY-TDSYKLKLK 448
W KQ Y T + LK K
Sbjct: 129 MWINYSDREKQPYITKAADLKEK 151
>CE28487 [K] KOG0528 HMG-box transcription factor SOX5
Length = 470
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 284 STNGSGKTAQPPVKKLSITQTRIAKRKELKKQGP-KRPSSAYFLFSISIRPELLKQYPDA 342
S N SGK+ S+T R + K KRP +A+ +++ R ++LK YPD
Sbjct: 298 SPNSSGKSTPG---NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 354
Query: 343 KVPELSKLSSAKWKSMTDEEKKPFFDQ 369
+SK+ ++WK M++ EK+P++++
Sbjct: 355 HNSNISKILGSRWKGMSNSEKQPYYEE 381
>At5g23420 [R] KOG0381 HMG box-containing protein
Length = 226
Score = 51.6 bits (122), Expect = 2e-06
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 290 KTAQPPVKKLSITQTRIAKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSK 349
KT K + +T K+ PKRP +A+F+F R ++ + + +K
Sbjct: 73 KTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAK 132
Query: 350 LSSAKWKSMTDEEKKPFFDQ 369
+ KWKS+T+EEKK + D+
Sbjct: 133 IGGEKWKSLTEEEKKVYLDK 152
>Hs17442539 [R] KOG0381 HMG box-containing protein
Length = 393
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/134 (24%), Positives = 63/134 (46%), Gaps = 7/134 (5%)
Query: 296 VKKLSITQTRIAKRKELKKQG------PKRPSSAYFLFSISIRPELLKQYPDAKVPELSK 349
+KKL + + K ++G PKRP +AY F P+ + YP + EL+K
Sbjct: 73 LKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTK 132
Query: 350 LSSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEETLPPKRPSGPFLQFTKDIRPLLV 409
+ S K+K + ++ K+ + F+ +++ ++ E P G +K I+ V
Sbjct: 133 ILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKKSDISKRIQ-TKV 191
Query: 410 EEQPDKTLIEITKL 423
+++ K + E+T L
Sbjct: 192 QKKVQKNIEEVTSL 205
>YDR174w [R] KOG0381 HMG box-containing protein
Length = 246
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/95 (30%), Positives = 46/95 (47%), Gaps = 10/95 (10%)
Query: 306 IAKRKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLS-----SAKWKSMTD 360
+ ++ E PK+P + +F +S +R EL + A +P LS S KWK ++D
Sbjct: 95 VRRKIERDPNAPKKPLTVFFAYSAYVRQELREDRQKAGLPPLSSTEITQEISKKWKELSD 154
Query: 361 EEKKPFFDQFKTNWEKYRIARKKYEE-----TLPP 390
EK+ + + E Y+ + KY E TLPP
Sbjct: 155 NEKEKWKQAYNVELENYQREKSKYLEAKKNGTLPP 189
>CE01414 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 697
Score = 50.8 bits (120), Expect = 4e-06
Identities = 34/115 (29%), Positives = 60/115 (51%), Gaps = 3/115 (2%)
Query: 283 PSTNGSGKTAQPPVKKLSITQTRIAK-RKELKKQGPKRPSSAYFLFSISIRPELLKQYPD 341
PS G+ + KK + K +K+ PKR +SAY + ++ R EL K+ D
Sbjct: 521 PSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNEL-KEDGD 579
Query: 342 AKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKYRIARKKYEETLPPKRPSGP 396
+ V +++K AKWK+M+ ++KK + ++ + + +Y K+Y + PP S P
Sbjct: 580 S-VADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKP 633
>Hs5032109 [K] KOG0528 HMG-box transcription factor SOX5
Length = 622
Score = 50.4 bits (119), Expect = 5e-06
Identities = 22/69 (31%), Positives = 46/69 (65%), Gaps = 6/69 (8%)
Query: 318 KRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFDQFKTNWEKY 377
KRP +A+ +++ R ++L+ +PD +SK+ ++WKSMT++EK+P+++ E+
Sbjct: 425 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYE------EQA 478
Query: 378 RIARKKYEE 386
R++R+ E+
Sbjct: 479 RLSRQHLEK 487
>YPR052c [R] KOG0381 HMG box-containing protein
Length = 93
Score = 50.1 bits (118), Expect = 7e-06
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 309 RKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAKVPELSKLSSAKWKSMTDEEKKPFFD 368
RK+ PKR SAY F+ R + + PD ++ K KWK++T EEK+P+
Sbjct: 13 RKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEA 72
Query: 369 QFKTNWEKYRIARKKYEETL 388
+ + + ++Y ++ Y TL
Sbjct: 73 KAQADKKRYESEKELYNATL 92
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.126 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,862,992
Number of Sequences: 60738
Number of extensions: 911682
Number of successful extensions: 3653
Number of sequences better than 1.0e-05: 30
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3574
Number of HSP's gapped (non-prelim): 79
length of query: 464
length of database: 30,389,216
effective HSP length: 110
effective length of query: 354
effective length of database: 23,708,036
effective search space: 8392644744
effective search space used: 8392644744
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)