ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4825 good K KOG1605 Transcription TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4825 1652892 1654013 374
(374 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 269 4e-72
SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 133 5e-31
Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 125 8e-29
Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 125 8e-29
7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 114 3e-25
CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 113 4e-25
Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 110 3e-24
Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 103 3e-22
Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 102 1e-21
YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 101 2e-21
SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 97 3e-20
YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 94 2e-19
CE07727 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 94 2e-19
At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 94 2e-19
7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 93 7e-19
7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 91 2e-18
Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 90 6e-18
7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 83 8e-16
At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 80 6e-15
CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 79 1e-14
At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 78 2e-14
At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 77 4e-14
ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 69 1e-11
YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 68 2e-11
At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 55 1e-07
7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 53 6e-07
At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 52 1e-06
At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 50 7e-06
>YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 446
Score = 269 bits (688), Expect = 4e-72
Identities = 152/358 (42%), Positives = 211/358 (58%), Gaps = 63/358 (17%)
Query: 70 IWCILIFLPNYLLIKPIITIWYVITFPLNLME------------TNTQGNKGLIQVGSET 117
+W +L+FLP YL+IKP++++W+V TFPL+++E +N N+ + +
Sbjct: 96 LWALLLFLPYYLIIKPLMSLWFVFTFPLSVIERRVKHTDKRNRGSNASENELPVSSSNIN 155
Query: 118 DSRTEKLSKY--------VVEEDLSPTDEIIINQDKMK------------PRPI------ 151
DS + K VE+DL+ +DEII+ +D +K PR
Sbjct: 156 DSSEKTNPKNCNLNTIPEAVEDDLNASDEIILQRDNVKGSLLRAQSVKSRPRSYSKSELS 215
Query: 152 ------------TEYLGKFHFPKKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNP 199
T+ +G+F FPKKL+P+S+L + +K LV+DLDETLIHS S S + N
Sbjct: 216 LSNHSSSNTVFGTKRMGRFLFPKKLIPKSVLNTQKKKKLVIDLDETLIHSASRSTTHSNS 275
Query: 200 TDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYA 259
+ HLVEV+F + I TLY + KRPYCD+FL + S+WYD+ IFTASMKEYA
Sbjct: 276 SQG---------HLVEVKFGLSGIRTLYFIHKRPYCDLFLTKVSKWYDLIIFTASMKEYA 326
Query: 260 DPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVKDIGTVATQIE----TSRDLSQMIIID 315
DPVIDWL+ + F R+YR DC LR GVGY+KD+ V E +S L +IIID
Sbjct: 327 DPVIDWLESSFPSSFSKRYYRSDCVLRDGVGYIKDLSIVKDSEENGKGSSSSLDDVIIID 386
Query: 316 NSPISYAMHLDNAIQVHGWINDPSDSEXXXXXXXXKAMRHVTDSRCILALKSGRASIS 373
NSP+SYAM++DNAIQV GWI+DP+D++ +AMR+ TD R ILALK G + +
Sbjct: 387 NSPVSYAMNVDNAIQVEGWISDPTDTDLLNLLPFLEAMRYSTDVRNILALKHGEKAFN 444
>SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 133 bits (334), Expect = 5e-31
Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 26/235 (11%)
Query: 135 PTDEIIINQDKMKPRPITEYLGKFHFPKKLVPQSMLLST-SRKLLVLDLDETLIHSMSNS 193
P+ I+N P + +P+ +L S RK LVLDLDETLIHS+S
Sbjct: 262 PSSFTIVNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRG 321
Query: 194 R--SLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIF 251
+ G P + + G P+ LY + KRP+ D FL SQW+ + +F
Sbjct: 322 SRTTSGQPIEVHVPGEHPI---------------LYYIHKRPHLDYFLSNVSQWFRLILF 366
Query: 252 TASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQM 311
TAS++ YADP+ID+L++ + F R+YR+ C L +VKDI LS++
Sbjct: 367 TASVQPYADPIIDYLERDKKI-FAKRYYRQHCALVDS-SFVKDISICNIH------LSRI 418
Query: 312 IIIDNSPISYAMHLDNAIQVHGWINDPSDSEXXXXXXXXKAMRHVTDSRCILALK 366
+IIDNSP SY H +NAI + GWI+DPSD + A+++V D R +L L+
Sbjct: 419 MIIDNSPASYNAHKENAIPIEGWISDPSDVDLLNLLSFLHALQYVHDVRDLLGLR 473
>Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 125 bits (315), Expect = 8e-29
Identities = 80/206 (38%), Positives = 114/206 (54%), Gaps = 19/206 (9%)
Query: 161 PKKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTP--MIHLVEVRF 218
P V ++ L RK+LVLDLDETLIHS + + PT + GT P ++ +V +
Sbjct: 47 PLSPVSRNRLAQVKRKILVLDLDETLIHSHHDG--VLRPTVR--PGTPPDFILKVVIDKH 102
Query: 219 PQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRW 278
P + V KRP+ D FL+ SQWY++ +FTASM+ Y V D L + S+ R+
Sbjct: 103 P-----VRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSI-LKRRY 156
Query: 279 YREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDP 338
YR+ CTL G Y+KD+ V + DLS ++I+DNSP +Y H DNAI + W +DP
Sbjct: 157 YRQHCTLELG-SYIKDLSVVHS------DLSSIVILDNSPGAYRSHPDNAIPIKSWFSDP 209
Query: 339 SDSEXXXXXXXXKAMRHVTDSRCILA 364
SD+ A+R D R +L+
Sbjct: 210 SDTALLNLLPMLDALRFTADVRSVLS 235
>Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 125 bits (315), Expect = 8e-29
Identities = 80/206 (38%), Positives = 114/206 (54%), Gaps = 19/206 (9%)
Query: 161 PKKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTP--MIHLVEVRF 218
P V ++ L RK+LVLDLDETLIHS + + PT + GT P ++ +V +
Sbjct: 47 PLSPVSRNRLAQVKRKILVLDLDETLIHSHHDG--VLRPTVR--PGTPPDFILKVVIDKH 102
Query: 219 PQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRW 278
P + V KRP+ D FL+ SQWY++ +FTASM+ Y V D L + S+ R+
Sbjct: 103 P-----VRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSI-LKRRY 156
Query: 279 YREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDP 338
YR+ CTL G Y+KD+ V + DLS ++I+DNSP +Y H DNAI + W +DP
Sbjct: 157 YRQHCTLELG-SYIKDLSVVHS------DLSSIVILDNSPGAYRSHPDNAIPIKSWFSDP 209
Query: 339 SDSEXXXXXXXXKAMRHVTDSRCILA 364
SD+ A+R D R +L+
Sbjct: 210 SDTALLNLLPMLDALRFTADVRSVLS 235
>7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 243
Score = 114 bits (284), Expect = 3e-25
Identities = 76/205 (37%), Positives = 105/205 (51%), Gaps = 15/205 (7%)
Query: 160 FPKKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFP 219
FP V + L RK LVLDLDETLIHS N+ P + GT P V+V
Sbjct: 45 FPLSPVSRHRLSLVQRKTLVLDLDETLIHSHHNAM----PRNTVKPGT-PHDFTVKVTID 99
Query: 220 QTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWY 279
+ + + V KRP+ D FL SQWYD+ +FTASM+ Y V D L ++ R+Y
Sbjct: 100 RNPVR--FFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI-LRRRYY 156
Query: 280 REDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPS 339
R+ CT G Y KD+ + + DL+++ IIDNSP +Y +NAI + W +DP
Sbjct: 157 RQHCTPDYG-SYTKDLSAICS------DLNRIFIIDNSPGAYRCFPNNAIPIKSWFSDPM 209
Query: 340 DSEXXXXXXXXKAMRHVTDSRCILA 364
D+ A+R D R +L+
Sbjct: 210 DTALLSLLPMLDALRFTNDVRSVLS 234
>CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 246
Score = 113 bits (283), Expect = 4e-25
Identities = 75/210 (35%), Positives = 108/210 (50%), Gaps = 17/210 (8%)
Query: 157 KFH--FPKKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLV 214
K+H P + LL+ RK+LVLDLDETLIHS + PS T I +V
Sbjct: 37 KYHSNIPMSPLTTHRLLTVKRKILVLDLDETLIHSHHDGVLRQTVKPGTPSDFT--IRVV 94
Query: 215 EVRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQF 274
R P ++V +RP+ D FL SQWY++ +FTASM+ Y V D L + +
Sbjct: 95 IDRHP-----VKFSVHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDRGRGI-L 148
Query: 275 HYRWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGW 334
R++R+ CT+ G GY KD+ + DLS + I+DNSP +Y NAI + W
Sbjct: 149 KRRYFRQHCTMEVG-GYTKDLSAI------HPDLSSICILDNSPGAYRKFPHNAIPIPSW 201
Query: 335 INDPSDSEXXXXXXXXKAMRHVTDSRCILA 364
+DP+D+ A+R +D R +L+
Sbjct: 202 FSDPNDTCLLNLLPFLDALRFTSDVRSVLS 231
>Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 340
Score = 110 bits (276), Expect = 3e-24
Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 150 PITEYLGKFHFP--KKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGT 207
P+ E G P K L+P+ +L +K +V+DLDETL+HS P
Sbjct: 143 PLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFK-----------PISN 191
Query: 208 TPMIHLVEVRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQ 267
I VE+ I +Y V KRP+ D FLQ+ Q ++ +FTAS+ +YADPV D L
Sbjct: 192 ADFIVPVEI---DGTIHQVY-VLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD 247
Query: 268 QTCSVQFHYRWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDN 327
+ F R +RE C G YVKD+ + R+LS++II+DNSP SY H +N
Sbjct: 248 RWGV--FRARLFRESCVFHRG-NYVKDLSRLG------RELSKVIIVDNSPASYIFHPEN 298
Query: 328 AIQVHGWINDPSDSE 342
A+ V W +D +D+E
Sbjct: 299 AVPVQSWFDDMTDTE 313
>Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 261
Score = 103 bits (258), Expect = 3e-22
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 24/200 (12%)
Query: 164 LVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNI 223
L+P++ + + +V+DLDETL+HS + + + N P ++H V V
Sbjct: 79 LLPEAKAQDSDKICVVIDLDETLVHS--SFKPVNNADFIIPVEIDGVVHQVYV------- 129
Query: 224 STLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDC 283
KRP+ D FLQ+ + ++ +FTAS+ +YADPV D L + + F R +RE C
Sbjct: 130 ------LKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGA--FRARLFRESC 181
Query: 284 TLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSEX 343
G YVKD+ + RDL +++I+DNSP SY H DNA+ V W ++ SD+E
Sbjct: 182 VFHRG-NYVKDLSRLG------RDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTEL 234
Query: 344 XXXXXXXKAMRHVTDSRCIL 363
+ + V D +L
Sbjct: 235 HDLLPFFEQLSRVDDVYSVL 254
>Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 283
Score = 102 bits (253), Expect = 1e-21
Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 30/182 (16%)
Query: 164 LVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNP---SGTTPMIHLVEVRFPQ 220
L+P+ R +V+DLDETL+HS + + + N P GTT ++
Sbjct: 90 LLPEVTEEDQGRICVVIDLDETLVHS--SFKPINNADFIVPIEIEGTTHQVY-------- 139
Query: 221 TNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYR 280
V KRPY D FL++ + ++ +FTAS+ +YADPV D L + C V F R +R
Sbjct: 140 --------VLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR-CGV-FRARLFR 189
Query: 281 EDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSD 340
E C G YVKD+ + RDL + +I+DNSP SY H +NA+ V W +D +D
Sbjct: 190 ESCVFHQGC-YVKDLSRLG------RDLRKTLILDNSPASYIFHPENAVPVQSWFDDMAD 242
Query: 341 SE 342
+E
Sbjct: 243 TE 244
>YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 397
Score = 101 bits (251), Expect = 2e-21
Identities = 74/240 (30%), Positives = 117/240 (47%), Gaps = 38/240 (15%)
Query: 108 KGLIQVGSETDSRTEKLSKYVVEEDLSPT-DEIIINQDKMKPRPITEYLGKFHFP--KKL 164
+GL QVG E + S + +L PT +E + ++P ++H P L
Sbjct: 164 QGLYQVGQEDMNPQYVASSPDNDLNLIPTTEEDFSDLTHLQP-------DQYHAPGYDTL 216
Query: 165 VPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNIS 224
+P + +K L+LDLDETL+HS + +H + P
Sbjct: 217 LPPKLQEFQQKKCLILDLDETLVHS-----------------SFKYMHSADFVLPVEIDD 259
Query: 225 TLYNV--AKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYRED 282
++NV KRP D FL + SQ Y++ +FTAS+ YA+P++D L ++ H+R +RE
Sbjct: 260 QVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTI--HHRLFREA 317
Query: 283 CTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
C G Y+K++ + R LS+ II+DNSP SY H +A+ + W +D D+E
Sbjct: 318 CYNYEG-NYIKNLSQI------GRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNE 370
>SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 325
Score = 97.4 bits (241), Expect = 3e-20
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 24/203 (11%)
Query: 164 LVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNI 223
L+P +K L+LDLDETL+HS S P D + +E+ Q ++
Sbjct: 146 LLPPIAKEDEGKKCLILDLDETLVHS---SFKYIEPAD--------FVVSIEIDGLQHDV 194
Query: 224 STLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDC 283
V KRP D FL++ ++I +FTAS+ +YADPV+D L + ++ +R +RE C
Sbjct: 195 ----RVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIR--HRLFREAC 248
Query: 284 TLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSEX 343
G +VKD+ + R+L IIIDNSP SY H +A+ + W ND D E
Sbjct: 249 CNYEG-NFVKDLS------QLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMEL 301
Query: 344 XXXXXXXKAMRHVTDSRCILALK 366
+ + V D +L L+
Sbjct: 302 IDLIPFLEHLARVPDVSTVLNLQ 324
>YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 427
Score = 94.4 bits (233), Expect = 2e-19
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 29/247 (11%)
Query: 101 ETNTQGNKGLIQVGSETDSRTEKLSKYVVEEDLSPTDEIIINQDKMKPRPITEYL---GK 157
++ +Q +QV S+ + LS+ S T ++D I L G+
Sbjct: 178 QSQSQQRGPTVQVSSDHLIQDMNLSRVSSSSQASETSNDADDEDDEDEEYIDLTLLQQGQ 237
Query: 158 FHFP--KKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVE 215
+H P L+P + +K L+LDLDETL+HS + + VE
Sbjct: 238 YHAPGYNTLLPPQDESTKGKKCLILDLDETLVHSSFKYLR-----------SADFVLSVE 286
Query: 216 VRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFH 275
+ + +Y V KRP + FL++ + +++ +FTAS+ Y DP++D L + H
Sbjct: 287 I---DDQVHNVY-VIKRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVI--H 340
Query: 276 YRWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWI 335
+R +RE C G Y+K++ + R LS +II+DNSP SY H +AI + W
Sbjct: 341 HRLFREACYNYEG-NYIKNLSQIG------RPLSDIIILDNSPASYIFHPQHAIPISSWF 393
Query: 336 NDPSDSE 342
+D D+E
Sbjct: 394 SDTHDNE 400
>CE07727 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 288
Score = 94.4 bits (233), Expect = 2e-19
Identities = 70/212 (33%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 162 KKLVPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQT 221
K L+P + +++K LV+DLDETL+HS KNP P VE+ +
Sbjct: 57 KPLLPPLLPQDSNKKCLVIDLDETLVHSSFKPV-------KNPDFVIP----VEIDGVEH 105
Query: 222 NISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYRE 281
+ L KRPY D FL + + ++ +FTAS+ +YADPV D L + F R +RE
Sbjct: 106 QVYVL----KRPYVDEFLAKVGEHFECILFTASLAKYADPVADLLDK--KRVFRGRLFRE 159
Query: 282 DCTLRPG-----------VGYVKDIGTV--------------ATQIE------TSRDLSQ 310
C G + + + G + +IE R+L+Q
Sbjct: 160 ACVFHKGNYRKSNISDSFIFFSEIFGEIDYRKMKNLHFSSYFPEKIEKYYLSRLGRNLNQ 219
Query: 311 MIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
+IIDNSP SYA H +NA+ V W +DPSD+E
Sbjct: 220 TLIIDNSPASYAFHPENAVPVTTWFDDPSDTE 251
>At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 94.4 bits (233), Expect = 2e-19
Identities = 62/189 (32%), Positives = 95/189 (49%), Gaps = 23/189 (12%)
Query: 178 LVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRPYCDM 237
LVLDLDETL+HS G P H+V VR RP+
Sbjct: 114 LVLDLDETLVHS--TLEPCGEVDFTFPVNFNEEEHMVYVRC-------------RPHLKE 158
Query: 238 FLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVKDIGT 297
F+++ S+ ++I IFTAS YA+ +++ L + F +R YR+ C G Y+KD+
Sbjct: 159 FMERVSRLFEIIIFTASQSIYAEQLLNVLDPKRKL-FRHRVYRDSCVFFDG-NYLKDLSV 216
Query: 298 VATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSEXXXXXXXXKAMRHVT 357
+ RDLS++II+DNSP ++ ++N + + W NDPSD E +++ V
Sbjct: 217 LG------RDLSRVIIVDNSPQAFGFQVENGVPIESWFNDPSDKELLHLLPFLESLIGVE 270
Query: 358 DSRCILALK 366
D R ++A K
Sbjct: 271 DVRPMIAKK 279
>7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 208
Score = 92.8 bits (229), Expect = 7e-19
Identities = 72/202 (35%), Positives = 97/202 (47%), Gaps = 24/202 (11%)
Query: 170 LLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQ--TNIST-- 225
L RK LVLDLDETL+HS D + L E P NIS
Sbjct: 5 LAVVGRKTLVLDLDETLVHSCY--------LDPDTHDNVGCSQLPEHAQPDYVLNISIDG 56
Query: 226 ----LYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYRE 281
++ V KRP+ D FL S+WYD+ I+TAS++ YA V+D L + R+YR+
Sbjct: 57 MEPIVFRVFKRPHVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGL-ITRRFYRQ 115
Query: 282 DCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDS 341
C + KD+ V + D+S ++IIDNSP +Y DNAI + +I DP D+
Sbjct: 116 HCRASSPM-VSKDLTLV------TPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDPDDT 168
Query: 342 EXXXXXXXXKAMRHVTDSRCIL 363
E A+R D R IL
Sbjct: 169 ELLKMLPFLDALRFTKDVRSIL 190
>7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 302
Score = 91.3 bits (225), Expect = 2e-18
Identities = 56/153 (36%), Positives = 83/153 (53%), Gaps = 15/153 (9%)
Query: 190 MSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIA 249
+ N+ ++ PT P+ +V V T + +Y V KRP+ D FLQ+ + Y+
Sbjct: 68 IDNTATITGPTKPIPNAD----FIVPVEIDGT-VHQVY-VLKRPHVDEFLQKMGELYECV 121
Query: 250 IFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVKDIGTVATQIETSRDLS 309
+FTAS+ +YADPV D L + F R +RE C G Y+KD+ + RDL
Sbjct: 122 LFTASLAKYADPVADLLDKWNV--FRARLFRESCVYYRG-NYIKDLNRLG------RDLQ 172
Query: 310 QMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
+++I+DNSP SY H DNA+ V W +D +D E
Sbjct: 173 KIVIVDNSPASYIFHPDNAVPVKSWFDDVTDCE 205
>Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 466
Score = 89.7 bits (221), Expect = 6e-18
Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 172 STSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAK 231
ST LVLDLDETL+H N ++ + T P++ Q I +Y V
Sbjct: 284 STPEFSLVLDLDETLVHCSLNEL-------EDAALTFPVLF-------QDVIYQVY-VRL 328
Query: 232 RPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGY 291
RP+ FL++ SQ Y+I +FTAS K YAD +++ L + H R +RE C G Y
Sbjct: 329 RPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH-RLFREHCVCVQG-NY 386
Query: 292 VKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
+KD+ + RDLS+ IIIDNSP ++A L N I + W D +D+E
Sbjct: 387 IKDLNILG------RDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNE 431
>7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 236
Score = 82.8 bits (203), Expect = 8e-16
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 165 VPQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNIS 224
V +S L +RK LVLD+D T+I S R K P + H + P +
Sbjct: 43 VSKSRLSLVARKTLVLDMDNTMITSWFIKRG------KKPKNIPRIAHDFKFYLPAYG-A 95
Query: 225 TLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCT 284
T+Y V KRPY D FL + S+WYD+ +FT+ + YA P++D+L + + + R YR+ C
Sbjct: 96 TIY-VYKRPYLDHFLDRVSKWYDLTVFTSGAEIYASPILDFLDRGRGI-LNSRLYRQHC- 152
Query: 285 LRPGVGYVKDIGTVATQIETS-RDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSEX 343
++ G + + + DLS ++++DNS + + +NAI + + D
Sbjct: 153 -------IEQFGKWSKSVLLACPDLSNVVLLDNSSTECSFNAENAILIKSYEIGCRDEAL 205
Query: 344 XXXXXXXKAMRHVTDSRCIL 363
A+R + D R +L
Sbjct: 206 INLLPFLDALRFMKDVRSML 225
>At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 278
Score = 79.7 bits (195), Expect = 6e-15
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 162 KKLVPQSMLL--STSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFP 219
KKL + L+ + ++ + LDLDETL+HS P + +V ++
Sbjct: 87 KKLHKREPLIRRNDKKRTIFLDLDETLVHSTME-----------PPIRVNVDFMVRIKIE 135
Query: 220 QTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWY 279
I V KRP FL++ S+ Y +AIFTA + EYA V+D L + + R Y
Sbjct: 136 GAVIPMF--VVKRPGVTEFLERISKNYRVAIFTAGLPEYASQVLDKLDKNRVIS--QRLY 191
Query: 280 REDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPS 339
R+ CT G Y KD+ VA DL ++++D++P SY++ DN + + +++D
Sbjct: 192 RDSCTEVNG-RYAKDLSLVA-----KNDLGSVLLVDDNPFSYSLQPDNGVPIKPFMDDME 245
Query: 340 DSE 342
D E
Sbjct: 246 DQE 248
>CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 287
Score = 79.0 bits (193), Expect = 1e-14
Identities = 59/171 (34%), Positives = 86/171 (49%), Gaps = 23/171 (13%)
Query: 172 STSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAK 231
ST LVLDLDETL+H P D N + P++ NI+ V
Sbjct: 61 STPEYTLVLDLDETLVHCSLT------PLD-NATMVFPVVF--------QNITYQVYVRL 105
Query: 232 RPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGY 291
RP+ FL + ++ ++I IFTAS K YA+ + D L + +R +RE C G Y
Sbjct: 106 RPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKN-HIRHRLFREHCVCVFG-NY 163
Query: 292 VKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
VKD+ + RD S+ +I+DN+ S+A LDN I + W +D +D+E
Sbjct: 164 VKDLTILG------RDPSKTMILDNAVQSFAYQLDNGIPIESWFHDRNDTE 208
>At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 272
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/169 (34%), Positives = 87/169 (50%), Gaps = 22/169 (13%)
Query: 174 SRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRP 233
++K +VLDLDETL+HS S+ P P I I T + V KRP
Sbjct: 96 TKKTIVLDLDETLVHS-----SMEKPEVPYDFVVNPKI--------DGQILTFF-VIKRP 141
Query: 234 YCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVK 293
D FL++ + Y I +FTA ++EYA V+D L V +YR+ C+ G VK
Sbjct: 142 GVDEFLKKIGEKYQIVVFTAGLREYASLVLDKLDPERRV-ISRSFYRDACSEIDG-RLVK 199
Query: 294 DIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
D+G V RDL +++I+D++P SYA+ +NA + + +D D E
Sbjct: 200 DLGFV------MRDLRRVVIVDDNPNSYALQPENAFPIKPFSDDLEDVE 242
>At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 221
Score = 77.0 bits (188), Expect = 4e-14
Identities = 50/168 (29%), Positives = 88/168 (51%), Gaps = 22/168 (13%)
Query: 175 RKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNISTLYNVAKRPY 234
++ ++LDLDETL+H+ T P + +V++ + I ++ V KRP
Sbjct: 49 KRTIILDLDETLVHA----------TTHLPGVKHDFMVMVKM---EREIMPIF-VVKRPG 94
Query: 235 CDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLRPGVGYVKD 294
FL++ + Y + +FTA ++EYA V+D L + + R YR+ CT G YVKD
Sbjct: 95 VTEFLERLGENYKVVVFTAGLEEYASQVLDKLDKNGVIS--QRLYRDSCTEVNG-KYVKD 151
Query: 295 IGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSDSE 342
+ V +DL +I+D++P SY++ +N + + +++D D E
Sbjct: 152 LSLV-----VGKDLRSALIVDDNPSSYSLQPENGVPIKAFVDDLKDQE 194
>ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 226
Score = 68.9 bits (167), Expect = 1e-11
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 166 PQSMLLSTSRKLLVLDLDETLIHSMSNSRSLGNPTDKNPSGTTPMIHLVEVRFPQTNIST 225
PQ +++ LVLDLD TL++S P ++ V P++
Sbjct: 39 PQVTQRHSTKPTLVLDLDNTLVYSTFRM---------------PKLYDFCVEIPRSRNIL 83
Query: 226 LYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTL 285
+Y V RPY F+ Y++ IFT++ +EYA V+D + ++ YRE CT
Sbjct: 84 IY-VKARPYAAEFISAAEALYEVVIFTSAKREYAKKVVDRIDTNKNIS--RILYRESCTF 140
Query: 286 RPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQV 331
G YVKD+ V R L ++I+ID++P SY + N I +
Sbjct: 141 TNG-RYVKDLRKV------GRSLDRVILIDDNPYSYELQPRNGIHI 179
>YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/114 (33%), Positives = 63/114 (54%), Gaps = 8/114 (7%)
Query: 227 YNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRWYREDCTLR 286
+ AKRP D FL SQ+Y+I +F+++ Y+D + + L + Y ++E C +
Sbjct: 213 WRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAF-VSYNLFKEHCVYK 271
Query: 287 PGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDPSD 340
GV ++KD+ + +RDLS++IIID P SY + +NAI + W + D
Sbjct: 272 DGV-HIKDLSKL------NRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADD 318
>At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 55.5 bits (132), Expect = 1e-07
Identities = 50/173 (28%), Positives = 81/173 (45%), Gaps = 40/173 (23%)
Query: 175 RKLLVLDLDETLIHSMSNSR---SLGNP---------------TDKNPSGTTPMIHLVEV 216
R +VLDLDETL+ + S +L N TDK G
Sbjct: 97 RLKVVLDLDETLVCAYETSSLPAALRNQAIEAGLKWFELECLSTDKEYDGK--------- 147
Query: 217 RFPQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHY 276
P+ N T++ +RP FL+Q S++ D+ +FTA ++ YA P++D + T V +
Sbjct: 148 --PKINYVTVF---ERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRI-DTRKVLTN- 200
Query: 277 RWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAI 329
R YR +VKD+ + TS+++ + +I+DN+P S+ + N I
Sbjct: 201 RLYRPSTVSTQYRDHVKDL------LSTSKNMCRTVIVDNNPFSFLLQPSNGI 247
>7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 343
Score = 53.1 bits (126), Expect = 6e-07
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 219 PQTNISTLYNVAKRPYCDMFLQQTSQWYDIAIFTASMKEYADPVIDWLQQTCSVQFHYRW 278
P T + KRP D FLQQ S+ ++I I+T+ A P++D L ++ YR
Sbjct: 153 PDWTYQTGWRFKKRPGVDYFLQQCSRNFEIVIYTSEQGMTAFPLLDALDPYGYIK--YRL 210
Query: 279 YREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWINDP 338
R L G + K++ + +RDLS++I++D P + +H DN++ + W+ +
Sbjct: 211 VRGATDLVEG-QHTKNLDYL------NRDLSRVIVVDCDPYTTPLHPDNSLVLTKWLGND 263
Query: 339 SD 340
D
Sbjct: 264 DD 265
>At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 307
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/92 (28%), Positives = 46/92 (49%), Gaps = 7/92 (7%)
Query: 277 RWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWIN 336
R+YR+ C L G+ Y KD+ + DL+++ I+DN P Y + ++N I + W +
Sbjct: 220 RFYRDSCILSDGI-YTKDLTVLGL------DLAKVAIVDNCPQVYRLQINNGIPIKSWYD 272
Query: 337 DPSDSEXXXXXXXXKAMRHVTDSRCILALKSG 368
DP+D + + D R ++A + G
Sbjct: 273 DPTDDGLITLLPFLETLADANDVRPVIAKRFG 304
>At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 293
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 277 RWYREDCTLRPGVGYVKDIGTVATQIETSRDLSQMIIIDNSPISYAMHLDNAIQVHGWIN 336
R+YR+ C L G+ Y KD+ + DL+++ IIDN P Y + ++N I + W +
Sbjct: 206 RFYRDSCILLDGI-YTKDLTVLGL------DLAKVAIIDNCPQVYRLQINNGIPIKSWYD 258
Query: 337 DPSDSEXXXXXXXXKAMRHVTDSRCILALKSG 368
DP+D + + D R I+ + G
Sbjct: 259 DPTDDGLITILPFLETLAVADDVRPIIGRRFG 290
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,982,180
Number of Sequences: 60738
Number of extensions: 900856
Number of successful extensions: 2243
Number of sequences better than 1.0e-05: 28
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2184
Number of HSP's gapped (non-prelim): 29
length of query: 374
length of database: 30,389,216
effective HSP length: 108
effective length of query: 266
effective length of database: 23,829,512
effective search space: 6338650192
effective search space used: 6338650192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)