ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4862 suspect: LH R KOG4812 General function prediction only Golgi-associated protein/Nedd4 WW domain-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4862 1665921 1664974 -316
(316 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR290w [R] KOG4812 Golgi-associated protein/Nedd4 WW domain-bin... 277 1e-74
SPAC328.07c [R] KOG4812 Golgi-associated protein/Nedd4 WW domain... 89 6e-18
>YBR290w [R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding
protein
Length = 321
Score = 277 bits (709), Expect = 1e-74
Identities = 136/260 (52%), Positives = 182/260 (69%), Gaps = 4/260 (1%)
Query: 53 TGTTSSSSRL--HQMNGQFQQHLNFVARKFNILDRLFRGGSSSEQAMRLQVGASSDGVFS 110
+G S++ RL HQ+ Q +H+ + R FNILDRLF+ ++Q+ +Q GA DGVFS
Sbjct: 60 SGGNSTTERLVPHQLREQAARHIGKIGRHFNILDRLFK--KRTQQSSDIQQGAMFDGVFS 117
Query: 111 NLMAKPERNGINGNGEQDKPPTYDEAAADMAPPYYGIDDDGVGLYYNEICIDGLPVGNIF 170
NL AKP+ GN EQD PPTYDEAAADMAP YYG+D + +YY+EICI+GLPVGNI
Sbjct: 118 NLSAKPDTTETEGNNEQDIPPTYDEAAADMAPSYYGMDLNNSDIYYDEICIEGLPVGNIA 177
Query: 171 NFLWNXXXXXXXXXXXXLLTYILHTSHAARQGSRFGLGVTFIGYGYSMIPNDVSGKIGKD 230
N LWN L+TYILHTSHAA+QGSRFGLG+TFIGYGYSMIPNDV+ K+GK+
Sbjct: 178 NLLWNIIVSTSFQFIGFLITYILHTSHAAKQGSRFGLGLTFIGYGYSMIPNDVTSKVGKN 237
Query: 231 NELNRFTFDNPDSFEEIRLYTSTSTQDEFESDLSHGVMEKTRHTPALAXXXXXXXXXXXX 290
LNR ++P+ F+++RL + ++TQD+FES L+HG+ E+ ++ P LA
Sbjct: 238 KSLNRMELEDPNEFDDVRLNSQSTTQDKFESHLNHGLDEEKQNIPWLAVFVAFLGLFITL 297
Query: 291 KSIWDYIKVKRMEARFLQDA 310
KSI+DYI+VK++E ++L +
Sbjct: 298 KSIYDYIQVKKLEKKYLNQS 317
>SPAC328.07c [R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding
protein
Length = 277
Score = 89.4 bits (220), Expect = 6e-18
Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 15/139 (10%)
Query: 102 GASSDGVFSNLMAKPERNGINGNGEQ--DKPPTYDEAAADMAPPYYG----IDDDGVGLY 155
G D VFSNL AKP + N E+ ++PP+Y++AAAD APPY+ I D G
Sbjct: 94 GHHVDSVFSNLSAKPT---VESNTEELEEEPPSYEQAAADTAPPYWDTTMVIPDYGS--- 147
Query: 156 YNEICIDGLPVGNIFNFLWNXXXXXXXXXXXXLLTYILHTSHAARQGSRFGLGVTFIGYG 215
NEI IDG+ VG F+F+W+ L+TY+L T+H R G++ GL +T G
Sbjct: 148 -NEIYIDGMSVGTGFSFVWSACVAILFPFVGFLVTYVLSTTHLGRYGAQIGLSLTLFQRG 206
Query: 216 YSMIPNDVSGKIGKDNELN 234
Y MI SG D++ N
Sbjct: 207 YIMISE--SGMENNDDQYN 223
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,653,721
Number of Sequences: 60738
Number of extensions: 661758
Number of successful extensions: 1307
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 2
length of query: 316
length of database: 30,389,216
effective HSP length: 106
effective length of query: 210
effective length of database: 23,950,988
effective search space: 5029707480
effective search space used: 5029707480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)