ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4871 good BK KOG1649 Chromatin structure and dynamics SWI-SNF chromatin remodeling complex, Snf5 subunit
r_klactV4871 good BK KOG1649 Transcription SWI-SNF chromatin remodeling complex, Snf5 subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4871 1668724 1666325 -800
(800 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR289w [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 444 e-124
SPAC2F7.08c [BK] KOG1649 SWI-SNF chromatin remodeling complex Sn... 157 6e-38
Hs14777735 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf... 100 7e-21
7296745 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 100 2e-20
Hs4507077 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5... 99 2e-20
CE01045 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 99 3e-20
At3g17590 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5... 79 3e-14
SPCC16A11.14_1 [BK] KOG1649 SWI-SNF chromatin remodeling complex... 72 3e-12
YLR321c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 67 8e-11
>YBR289w [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 905
Score = 444 bits (1143), Expect = e-124
Identities = 241/502 (48%), Positives = 320/502 (63%), Gaps = 40/502 (7%)
Query: 318 DIPKFQTILQDPPETPLPHTRLWSEKERADNEPVSFDTRLYEHVIERDLLDKDNLLADTN 377
++PK+QTI DPPET LP+ WS+K +AD DT LYE +I+RD ++K +L+ +TN
Sbjct: 305 NLPKYQTIQYDPPETKLPYPTYWSDK-KADT-----DTLLYEQIIQRDKINKYSLIRETN 358
Query: 378 GLEPISKFGFSQREVILRLQQDLDYYKELRNSRMQSITNTTQGHKSKSIWGDGYSGYGNG 437
G +P S +GFS +E I RL L YY++L+N+RM+SIT+T+Q S SIWG+GYSGYGNG
Sbjct: 359 GYDPFSIYGFSNKEYISRLWHTLKYYQDLKNTRMKSITSTSQKIPSASIWGNGYSGYGNG 418
Query: 438 FSNDLTRI--QVDDTYEMHLDE----IYEWTMNQTGEELVPVRLEFDAEKDKFTLRDTFV 491
+N TR+ QV+ H E +Y+ MN+T E+LVP+RLEFD ++D+F LRDT +
Sbjct: 419 ITNTTTRVIPQVEVGNRKHYLEDKLKVYKQAMNETSEQLVPIRLEFDQDRDRFFLRDTLL 478
Query: 492 WNRSDTLLSINEFVKTTLKDYRLKVTT--EMYQQIVNSIKEQLQEYTPNPFE--NVQRFG 547
WN++D L+ I +FV L+DYR + T + I SI+EQ+QE+ NP+ N R G
Sbjct: 479 WNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDTICQSIQEQIQEFQGNPYIELNQDRLG 538
Query: 548 GDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFAECLCEELSLPGEFLTAIAHCIR 607
GDD RI+I LDIVVGQ+QLID EW++SN DNCPE FAE +C+EL LPGEF+TAIAH IR
Sbjct: 539 GDDLRIRIKLDIVVGQNQLIDQFEWEISNSDNCPEEFAESMCQELELPGEFVTAIAHSIR 598
Query: 608 EQVHMYHKSLYMVGYKFDGSPVEEDDIRTRFLPVLTLADVMRPQKDTFLYTPNLLQISPA 667
EQVHMYHKSL ++GY FDGS +E+DDIR+R LP +TL DV RP ++ ++TPNLLQIS A
Sbjct: 599 EQVHMYHKSLALLGYNFDGSAIEDDDIRSRMLPTITLDDVYRPAAESKIFTPNLLQISAA 658
Query: 668 ELERLVXXXXXXX---------------XXXXXXXXXXXXGNTENHPSSGSTPQLPH-DA 711
ELERL N ++G+ LP +
Sbjct: 659 ELERLDKDKDRDTRRKRRQGRSNRRGMLALSGTSASNTSMNGVHNTVAAGNASSLPPGEI 718
Query: 712 ELPDLGDIPKTCRQLLPTTTLPGGIDVGPSTLSFQPSTRVEYLDRAKATPKQEFQQEVRN 771
LPD+ DIP+T R +P+T +PGG+DVGPS S++ Y R PK
Sbjct: 719 LLPDIADIPRTFRTPVPSTLMPGGVDVGPSVESYELRNTTTYKSRPD-RPKPV------- 770
Query: 772 SSACRVIMHDVGKSLLVTIKLP 793
S C +I H G SLL++IKLP
Sbjct: 771 SPPCYIIDHIPGHSLLLSIKLP 792
>SPAC2F7.08c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 632
Score = 157 bits (397), Expect = 6e-38
Identities = 108/374 (28%), Positives = 175/374 (45%), Gaps = 61/374 (16%)
Query: 404 KELRNSRMQSITNTTQGHKSKSIWGDGYSGYGNGFSNDLTRI-------QVDDTYEMHLD 456
K +++R + T + + +G GY+G+GNG++ +I +V +
Sbjct: 68 KPFQSARNLQTSLKTHPESAITRYGLGYAGFGNGWTALKPKILFPSQKRRVKGRFTFPFS 127
Query: 457 EIYEWTMNQTGEELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKV 516
++ +LVP+RLE DA D++ LRD+F WN D +S+++F + DY + +
Sbjct: 128 RRSNLAQSKLPVDLVPIRLEIDA--DRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPL 185
Query: 517 -TTEMYQQIVNSIKEQLQEYTPNPFENVQRFGGD-------------------------- 549
+ Q I SI+ Q+ +Y P ++ F D
Sbjct: 186 HNVHIVQNISKSIQAQINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQI 245
Query: 550 -----DFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFAECLCEELSLPGEFLTAIAH 604
D RI I LDI +G+ LID EW++ P++ E FA +C +L L GEF TA+AH
Sbjct: 246 PTVQNDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCTAVAH 305
Query: 605 CIREQVHMYHKSLYMVGYKFDGSPVEEDDIRTRFLPVLTLADVMR-PQKDTFLYTPNLLQ 663
IREQ MY K L ++GY FDGS +E++++R+ LP L + +R ++ + P + +
Sbjct: 306 SIREQCQMYIKYLSLIGYLFDGSEIEDEEVRSYILP--PLKNTLRFSDMESSSFAPMIYE 363
Query: 664 ISPAELERLVXXXXXXXXXXXXXXXXXXXGNTENHPSSGSTPQLPHDAELPDLGDIPKTC 723
++ AE+ER + E + H LPDL DIPK
Sbjct: 364 LNDAEMER-----------------QDRGYDREARRMRRRQGRAKHGIMLPDLRDIPKIH 406
Query: 724 RQLLPTTTLPGGID 737
R L P++++P D
Sbjct: 407 RSLFPSSSVPSDDD 420
>Hs14777735 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 394
Score = 100 bits (250), Expect = 7e-21
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 27/232 (11%)
Query: 445 IQVDDTYEMHLDEIYEWTMNQTG---EELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSI 501
++ D +H D+ +++ E LVP+RL+ + + K LRD F WN ++ L++
Sbjct: 167 LRADSALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQK--LRDAFTWNMNEKLMTP 224
Query: 502 NEFVKTTLKDYRLKVTTEMYQQIVNSIKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVV 561
F + D L T I ++I++Q++ Y + Q D R+ I L+I V
Sbjct: 225 EMFSEILCDDLDLNPLT-FVPAIASAIRQQIESYPTDSILEDQ----SDQRVIIKLNIHV 279
Query: 562 GQHQLIDTVEWDVSNPDNCPESFAECLCEELSLPGEFLTAIAHCIREQVHMYHKSLYMVG 621
G L+D EWD+S +N PE FA LC EL L GEF+T IA+ IR Q+ + K+
Sbjct: 280 GNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKT----- 334
Query: 622 YKFDGSPVEEDDIRTRFLPVLTLADVMRPQKDTFLYTPNLLQISPAELERLV 673
Y F +P LP + +A +R D + P L ++ AE+E+ +
Sbjct: 335 YAFSENP----------LPTVEIA--IRNTGDADQWCPLLETLTDAEMEKKI 374
>7296745 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 370
Score = 99.8 bits (247), Expect = 2e-20
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 468 EELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKVTTEMYQQIVNS 527
E LVP+RL+ + E K LRDTF WN+++++++ +F + D L I +
Sbjct: 168 ECLVPIRLDMELEGQK--LRDTFTWNKNESMITPEQFAEVLCDDLDLN-PLPFVPAIAQA 224
Query: 528 IKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFAEC 587
I++Q++ + +P + D R+ + L+I VG L+D VEWD+S +N PE FA
Sbjct: 225 IRQQIEAFPNDPPILEETC---DQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIK 281
Query: 588 LCEELSLPGEFLTAIAHCIREQVHMYHKSLYMVGYKFDGSPVEEDDIRTRFLPVLTLADV 647
LC EL L GEF+TAIA+ IR Q+ + ++ Y F +P+ D+
Sbjct: 282 LCAELGLGGEFVTAIAYSIRGQLSWHCRT-----YAFSEAPLSTIDV------------P 324
Query: 648 MRPQKDTFLYTPNLLQISPAELERLV 673
R D + P L ++ AE+E+ +
Sbjct: 325 FRNPSDADAWAPFLETLTDAEMEKKI 350
>Hs4507077 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 385
Score = 99.4 bits (246), Expect = 2e-20
Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 24/206 (11%)
Query: 468 EELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKVTTEMYQQIVNS 527
E LVP+RL+ + + K LRD F WN ++ L++ F + D L T I ++
Sbjct: 184 EVLVPIRLDMEIDGQK--LRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLT-FVPAIASA 240
Query: 528 IKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFAEC 587
I++Q++ Y + Q D R+ I L+I VG L+D EWD+S +N PE FA
Sbjct: 241 IRQQIESYPTDSILEDQ----SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALK 296
Query: 588 LCEELSLPGEFLTAIAHCIREQVHMYHKSLYMVGYKFDGSPVEEDDIRTRFLPVLTLADV 647
LC EL L GEF+T IA+ IR Q+ + K+ Y F +P LP + +A
Sbjct: 297 LCSELGLGGEFVTTIAYSIRGQLSWHQKT-----YAFSENP----------LPTVEIA-- 339
Query: 648 MRPQKDTFLYTPNLLQISPAELERLV 673
+R D + P L ++ AE+E+ +
Sbjct: 340 IRNTGDADQWCPLLETLTDAEMEKKI 365
>CE01045 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 381
Score = 98.6 bits (244), Expect = 3e-20
Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 21/199 (10%)
Query: 465 QTGEELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKVTTEMYQQI 524
+ GE+LVP+RL D E D LRDTF +N+++ +++ + +D L + I
Sbjct: 176 EEGEDLVPIRL--DMELDGIKLRDTFTFNKNEKMITPEMIAEIMCEDLDLPLAV-FQPAI 232
Query: 525 VNSIKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESF 584
+I +QL+ T P +V D R + L+I VG L+D EWD+S+P+N PE F
Sbjct: 233 TAAINQQLEASTEAPPLDVNIC---DQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEF 289
Query: 585 AECLCEELSLPGEFLTAIAHCIREQVHMYHKSLYMVGYKFDGSPVEEDDIRTR------- 637
+ +C+EL L GEF++ IA+ IR Q+ ++ Y F SP+ D R
Sbjct: 290 SRNICKELGLGGEFMSGIAYSIRGQLQWNQRT-----YAFSESPLATVDCPFRTSSEVES 344
Query: 638 ---FLPVLTLADVMRPQKD 653
FL LT A++ + +D
Sbjct: 345 WGPFLETLTDAEIEKKMRD 363
>At3g17590 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 240
Score = 79.0 bits (193), Expect = 3e-14
Identities = 52/147 (35%), Positives = 78/147 (52%), Gaps = 8/147 (5%)
Query: 466 TGEELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKVTTEMYQQIV 525
T E LVP+RL+ E ++ +D F WN SD + F K T+KD LK+ QI
Sbjct: 19 TAENLVPIRLDIQFEGQRY--KDAFTWNPSDPDNEVVIFAKRTVKD--LKLPYAFVTQIA 74
Query: 526 NSIKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFA 585
SI+ QL ++ +E + G+ I I LD+ V + D WD++N ++ PE FA
Sbjct: 75 QSIQSQLSDF--RAYEGQDMYTGEKI-IPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFA 131
Query: 586 ECLCEELSLPG-EFLTAIAHCIREQVH 611
LC++L + E A+A IREQ++
Sbjct: 132 RTLCKDLGVEDPEVGPAVAFAIREQLY 158
>SPCC16A11.14_1 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 340
Score = 72.4 bits (176), Expect = 3e-12
Identities = 43/139 (30%), Positives = 77/139 (54%), Gaps = 7/139 (5%)
Query: 471 VPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFVKTTLKDYRLKVTTEMY-QQIVNSIK 529
+P+RL+ + + + L+DTF+WN ++ +++ + F + D L ++T +Y QI +SI+
Sbjct: 118 IPIRLDIELPNN-YRLKDTFLWNMNEQVMTPDVFAQILCAD--LDLSTNVYGTQISSSIR 174
Query: 530 EQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQLIDTVEWDVSNPDNCPESFAECLC 589
Q++EY P V G + + N+ + + Q D VEW++++P PE F+ C
Sbjct: 175 AQIEEYAP--VAEVPMPKGQEMLVVFNIQVQLAQLSYNDQVEWNLTSPLT-PEEFSVLTC 231
Query: 590 EELSLPGEFLTAIAHCIRE 608
+L L GE IA+ I E
Sbjct: 232 NDLGLSGESRPEIAYAIHE 250
>YLR321c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 426
Score = 67.4 bits (163), Expect = 8e-11
Identities = 44/165 (26%), Positives = 75/165 (44%), Gaps = 7/165 (4%)
Query: 446 QVDDTYEMHLDEIYEWTMNQTGEELVPVRLEFDAEKDKFTLRDTFVWNRSDTLLSINEFV 505
+V Y ++ D+ E N E + + + D E T++D F+WN +D +S EF
Sbjct: 179 KVVSPYRLNTDQ--ETKANANSGEAIMIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFA 236
Query: 506 KTTLKDYRLKVTTEMYQQIVNSIKEQLQEYTPNPFENVQRFGGDDFRIKINLDIVVGQHQ 565
KD + T + QI N IKEQL++ + D + INL +
Sbjct: 237 SIYCKDLDMTSAT-LQTQIANIIKEQLKDLENIAATEIM----SDLHVIINLTCNLQDRF 291
Query: 566 LIDTVEWDVSNPDNCPESFAECLCEELSLPGEFLTAIAHCIREQV 610
D +W++++ PE FA + ++L L EF+ I+ + E +
Sbjct: 292 FEDNFQWNLNDKSLTPERFATSIVQDLGLTREFIPLISQSLHETI 336
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,667,343
Number of Sequences: 60738
Number of extensions: 1602265
Number of successful extensions: 4273
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4231
Number of HSP's gapped (non-prelim): 18
length of query: 800
length of database: 30,389,216
effective HSP length: 115
effective length of query: 685
effective length of database: 23,404,346
effective search space: 16031977010
effective search space used: 16031977010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)