ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4882 good R KOG1844 General function prediction only PHD Zn-finger proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4882 1670923 1672260 446
(446 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL181w [R] KOG1844 PHD Zn-finger proteins 273 5e-73
SPBC1685.08 [R] KOG1844 PHD Zn-finger proteins 89 2e-17
SPAC22E12.11c [R] KOG1844 PHD Zn-finger proteins 64 3e-10
Hs8923726 [R] KOG1844 PHD Zn-finger proteins 59 1e-08
Hs20543055 [R] KOG1844 PHD Zn-finger proteins 59 1e-08
Hs18034775_1 [R] KOG1844 PHD Zn-finger proteins 59 2e-08
SPCC645.13 [K] KOG1634 Predicted transcription factor DATF1 cont... 56 9e-08
Hs8922081 [K] KOG1083 Putative transcription factor ASH1/LIN-59 54 4e-07
At4g39100_2 [R] KOG1632 Uncharacterized PHD Zn-finger protein 54 5e-07
7299595_2 [R] KOG1844 PHD Zn-finger proteins 52 2e-06
At3g61740 [BK] KOG1080 Histone H3 (Lys4) methyltransferase compl... 50 7e-06
7293772 [K] KOG1083 Putative transcription factor ASH1/LIN-59 50 9e-06
>YPL181w [R] KOG1844 PHD Zn-finger proteins
Length = 506
Score = 273 bits (697), Expect = 5e-73
Identities = 156/430 (36%), Positives = 212/430 (49%), Gaps = 21/430 (4%)
Query: 32 TRCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKPELHSLYTTDL 91
TRCICG+++ PDDSG +IQCEQC WQHGYCV I+++ PDKYWCEQC+PELH L+TTD
Sbjct: 73 TRCICGELDTPDDSGFFIQCEQCSSWQHGYCVSITQDNAPDKYWCEQCRPELHQLFTTDT 132
Query: 92 GEKRSIYKPIXXXXXXXXXXXXXXESDGEVSNAGSSLENQSPSSSVVSGNIG--XXXXXX 149
GE RSIYKP+ + S+A + E ++S N+
Sbjct: 133 GEARSIYKPVQEKRRQSRRKARSAAA--SKSHAANEAEKSPRNTSNTDDNVDDIGDEEDE 190
Query: 150 XXXXXXXVELSKDEGEDSIADSGNGEDKDENIPKREFDPIDENQKVADRKRATSSAREEK 209
V L+KD S D + + DP D ++K+ DRKRAT AREEK
Sbjct: 191 VEDEASAVALAKDGNTRSSRRRRRNSMDDASTDQYSLDPGDSDKKLLDRKRATFMAREEK 250
Query: 210 HYQLMLEKALRESRRSSKDGTDPE----DQDILK------------EEEASGKSASPKNY 253
YQ MLEKAL+ESRR+S DPE D DI + + + P +
Sbjct: 251 QYQRMLEKALKESRRTSHQ-EDPESYENDADIYQGDTDNHNGTTRLQTDVMLTEGKPDSV 309
Query: 254 TRDTESPEVEGSEADEXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXTTQSNS 313
T D + S+ ++ +
Sbjct: 310 TNDDMKESLRPSKEQSMEKTNDVEKEASQEKESSTGSAQDTEKTDEPILPLTSISSSEDD 369
Query: 314 RIYKTSSGRVARXXXXXXXXXXXXXXXXXXXXXXXXXXDIGINKPLKPRIPSQRTTMHEM 373
+S G DIG +KP+KPR+P QRT+++EM
Sbjct: 370 SRKASSRGSKRVSKPARKGNRTRRSNTSSDTNQNRRSADIGTDKPVKPRLPPQRTSLNEM 429
Query: 374 RRRVNAILEFISRTQLEISNDQRQRDQLCQFVENEEFLENINKIFSSYDESFKTMDELTR 433
RRRV+AILEFISRTQ E+S DQ R++ +FVEN+ F+E ++ I++ Y+ES MD+LTR
Sbjct: 430 RRRVSAILEFISRTQWELSEDQSDREEFVRFVENQHFVEKVDTIYNGYNESLSMMDDLTR 489
Query: 434 KLLLWEQKFS 443
+LLLWE+K+S
Sbjct: 490 ELLLWEKKYS 499
>SPBC1685.08 [R] KOG1844 PHD Zn-finger proteins
Length = 424
Score = 88.6 bits (218), Expect = 2e-17
Identities = 42/78 (53%), Positives = 51/78 (64%), Gaps = 8/78 (10%)
Query: 32 TRCICGKIEPPD---DSGLYIQCEQCHVWQHGYCVGISEE-ETPDKYWCEQCKPELHSLY 87
TRC+CG +E D D GLYIQC+QC VWQHG CVG ++E E P+ Y+CE C PE H +Y
Sbjct: 49 TRCVCGIVESDDEASDGGLYIQCDQCSVWQHGNCVGFADESEVPEVYYCEICHPEFHKVY 108
Query: 88 TTDLGEKRSIY----KPI 101
G K+S Y KPI
Sbjct: 109 QRGRGAKQSKYLGNGKPI 126
>SPAC22E12.11c [R] KOG1844 PHD Zn-finger proteins
Length = 859
Score = 64.3 bits (155), Expect = 3e-10
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 33 RCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKP 81
RC+C DD G IQCE C VWQH CV I P+KY+CEQC+P
Sbjct: 5 RCVCPF---EDDDGFTIQCESCEVWQHAVCVNIDANNVPEKYFCEQCQP 50
>Hs8923726 [R] KOG1844 PHD Zn-finger proteins
Length = 453
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 32 TRCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKP 81
TRCICG D G I C++C VWQH C+GI + PD Y CE+C+P
Sbjct: 53 TRCICGFTH---DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 99
>Hs20543055 [R] KOG1844 PHD Zn-finger proteins
Length = 609
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 32 TRCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKP 81
TRCICG D G I C++C VWQH C+GI + PD Y CE+C+P
Sbjct: 119 TRCICGFTH---DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 165
>Hs18034775_1 [R] KOG1844 PHD Zn-finger proteins
Length = 830
Score = 58.5 bits (140), Expect = 2e-08
Identities = 23/48 (47%), Positives = 31/48 (63%), Gaps = 3/48 (6%)
Query: 33 RCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCK 80
RCIC E +++ IQCE+C WQHG C+G+ EE P+KY C C+
Sbjct: 654 RCIC---EVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQ 698
>SPCC645.13 [K] KOG1634 Predicted transcription factor DATF1 contains PHD and
TFS2M domains
Length = 721
Score = 56.2 bits (134), Expect = 9e-08
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 33/194 (17%)
Query: 33 RCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKPELHSLYTTDLG 92
RC+C E D+ ++QC+ C WQH CVG+++++ P+ Y+CE C HS
Sbjct: 22 RCVCKSQEDIGDT--WVQCDGCDCWQHASCVGLADKDIPESYYCEVC----HSRSDVSSQ 75
Query: 93 EKRSIYKPIXXXXXXXXXXXXXXESDGEVSN-------------AGSSLENQSPSSSVVS 139
+ S K E + E +N +G+ LE+ P+S+ +
Sbjct: 76 VQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSDSKEAITKESGAELESSEPAST--N 133
Query: 140 GNIGXXXXXXXXXXXXXV----------ELSKDEGEDSIADSGNGEDKDENIPKREFDPI 189
N+G + S + S+ + + +N PK P
Sbjct: 134 SNVGMTTRSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKT--SPK 191
Query: 190 DENQKVADRKRATS 203
D + + AD+++ S
Sbjct: 192 DASNETADQEKELS 205
>Hs8922081 [K] KOG1083 Putative transcription factor ASH1/LIN-59
Length = 2969
Score = 54.3 bits (129), Expect = 4e-07
Identities = 24/49 (48%), Positives = 32/49 (64%), Gaps = 5/49 (10%)
Query: 33 RCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKP 81
RCICG +D GL IQC++C VWQH C+G++ + + Y CEQC P
Sbjct: 2587 RCICGLY---NDEGLMIQCDKCMVWQHCDCMGVNSD--VEHYLCEQCDP 2630
>At4g39100_2 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 121
Score = 53.9 bits (128), Expect = 5e-07
Identities = 23/59 (38%), Positives = 35/59 (58%), Gaps = 4/59 (6%)
Query: 34 CICGKIEPPDDSGLYIQCEQCHVWQHGYCVG--ISEEETPDKYWCEQCKPELHSLYTTD 90
C C PDD L +QCE+C W H C+G I E + PD ++CE+C P+ +L+ ++
Sbjct: 5 CKCEMPYNPDD--LMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQQQNLHNSN 61
>7299595_2 [R] KOG1844 PHD Zn-finger proteins
Length = 254
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 34 CICGKIEPPDDSGLYIQCEQCHVWQHGYCVGI-SEEETPDKYWCEQCK 80
CIC E ++ GL IQCE C WQHG C GI E + PDKY C C+
Sbjct: 5 CIC---EYGEEDGLMIQCELCLCWQHGACNGIVKEADVPDKYVCYICR 49
>At3g61740 [BK] KOG1080 Histone H3 (Lys4) methyltransferase complex subunit
SET1 and related methyltransferases
Length = 902
Score = 50.1 bits (118), Expect = 7e-06
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 35 ICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPD----KYWCEQCKPELHSLYTTD 90
IC +I P D G ++ C+ C VW H C I+ E + Y+C CK + H L T
Sbjct: 353 ICKRIWHPSDDGDWVCCDGCDVWVHAECDNITNERFKELEHNNYYCPDCKVQ-HELTPTI 411
Query: 91 LGEKRSIYK 99
L E+ S++K
Sbjct: 412 LEEQNSVFK 420
>7293772 [K] KOG1083 Putative transcription factor ASH1/LIN-59
Length = 2167
Score = 49.7 bits (117), Expect = 9e-06
Identities = 23/49 (46%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Query: 33 RCICGKIEPPDDSGLYIQCEQCHVWQHGYCVGISEEETPDKYWCEQCKP 81
RCICG + D GL IQC +C VWQH C + D Y CE+C+P
Sbjct: 1800 RCICGLYK---DEGLMIQCSKCMVWQHTECT--KADIDADNYQCERCEP 1843
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,169,319
Number of Sequences: 60738
Number of extensions: 882516
Number of successful extensions: 4190
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4173
Number of HSP's gapped (non-prelim): 17
length of query: 446
length of database: 30,389,216
effective HSP length: 110
effective length of query: 336
effective length of database: 23,708,036
effective search space: 7965900096
effective search space used: 7965900096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)