ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4910 good J KOG4122 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L36
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4910 1684167 1683928 -80
(80 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL183w-a [J] KOG4122 Mitochondrial/chloroplast ribosomal protei... 89 1e-18
SPBC83.06c [J] KOG4122 Mitochondrial/chloroplast ribosomal prote... 64 4e-11
Hs20806105 [J] KOG4122 Mitochondrial/chloroplast ribosomal prote... 63 8e-11
At5g20180 [J] KOG4122 Mitochondrial/chloroplast ribosomal protei... 58 2e-09
AtCh056 [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36 50 7e-07
>YPL183w-a [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36
Length = 93
Score = 88.6 bits (218), Expect = 1e-18
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
Query: 17 TRPAVKSINMLSMPMMGLMNPPLT--RGFKVRTSIKKFCNDCYMVRRKGRVYVYCKSNKK 74
T P++ S+ P + N PL RGFKVRTS+KKFC+DCY+VRRKGRVY+YCKSNKK
Sbjct: 29 TVPSLLSV-AAPQPALVAANRPLVFNRGFKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKK 87
Query: 75 HKQRQG 80
HKQRQG
Sbjct: 88 HKQRQG 93
>SPBC83.06c [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36
Length = 59
Score = 63.9 bits (154), Expect = 4e-11
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 40 TRGFKVRTSIKKFCNDCYMVRRKGRVYVYCKSNKKHKQRQG 80
+RGFKV+ S+KK C+ CY VRRKGR+YV CK + +HK RQG
Sbjct: 19 SRGFKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHKTRQG 59
>Hs20806105 [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36
Length = 103
Score = 62.8 bits (151), Expect = 8e-11
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 1 MSTLFGSTMLNSLTRLTRPAVKSINMLSMPMMGLMNPPLTRGFKVRTSIKKFCNDCYMVR 60
+ST ++ + P ++LS ++ + P L GFK +T +KK C DCY+V+
Sbjct: 26 LSTFLFGSIRGAAPVAVEPGAAVRSLLSPGLLPHLLPAL--GFKNKTVLKKRCKDCYLVK 83
Query: 61 RKGRVYVYCKSNKKHKQRQ 79
R+GR YVYCK++ +HKQRQ
Sbjct: 84 RRGRWYVYCKTHPRHKQRQ 102
>At5g20180 [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36
Length = 103
Score = 58.2 bits (139), Expect = 2e-09
Identities = 25/37 (67%), Positives = 29/37 (77%)
Query: 44 KVRTSIKKFCNDCYMVRRKGRVYVYCKSNKKHKQRQG 80
KVR+S+KK C C V+R+GRVYV C SN KHKQRQG
Sbjct: 2 KVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQG 38
>AtCh056 [J] KOG4122 Mitochondrial/chloroplast ribosomal protein L36
Length = 37
Score = 49.7 bits (117), Expect = 7e-07
Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 44 KVRTSIKKFCNDCYMVRRKGRVYVYCKSNKKHKQRQG 80
K+R S++K C C ++RR+GR+ V C SN +HKQRQG
Sbjct: 2 KIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,288,234
Number of Sequences: 60738
Number of extensions: 130125
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 30,389,216
effective HSP length: 56
effective length of query: 24
effective length of database: 26,987,888
effective search space: 647709312
effective search space used: 647709312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)