ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4931 good YU KOG0845 Intracellular trafficking, secretion, and vesicular transport Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
r_klactV4931 good YU KOG0845 Nuclear structure Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4931 1687547 1691503 1319
(1319 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL092w [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 644 0.0
SPAC1486.05 [YU] KOG0845 Nuclear pore complex Nup98 component (s... 164 9e-40
YKL068w [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 136 2e-31
YMR047c [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 135 4e-31
7301054 [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 122 4e-27
Hs21264371 [YU] KOG0845 Nuclear pore complex Nup98 component (sc... 107 1e-22
Hs21264369 [YU] KOG0845 Nuclear pore complex Nup98 component (sc... 107 1e-22
Hs21264365 [YU] KOG0845 Nuclear pore complex Nup98 component (sc... 107 1e-22
Hs21264367 [YU] KOG0845 Nuclear pore complex Nup98 component (sc... 105 4e-22
HsM11120678 [YU] KOG0845 Nuclear pore complex Nup98 component (s... 104 8e-22
At1g59660 [YU] KOG0845 Nuclear pore complex Nup98 component (sc ... 97 2e-19
At1g10390 [YU] KOG0845 Nuclear pore complex Nup98 component (sc ... 94 2e-18
CE28184 [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 80 2e-14
CE28183 [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 80 2e-14
YGL172w [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 70 3e-11
At1g80680 [YU] KOG0845 Nuclear pore complex Nup98 component (sc ... 61 1e-08
CE10988_1 [YU] KOG0845 Nuclear pore complex Nup98 component (sc ... 60 2e-08
YGR119c [YU] KOG3091 Nuclear pore complex p54 component (sc Nup57) 59 5e-08
YJL041w_1 [YU] KOG4719 Nuclear pore complex protein 54 1e-06
SPAC22G7.09c [YU] KOG0845 Nuclear pore complex Nup98 component (... 54 2e-06
CE23858 [YU] KOG3091 Nuclear pore complex p54 component (sc Nup57) 52 8e-06
>YGL092w [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1317
Score = 644 bits (1660), Expect = 0.0
Identities = 456/1361 (33%), Positives = 665/1361 (48%), Gaps = 155/1361 (11%)
Query: 11 LFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSA---NTLSTPSPGNPTG--FGNAQNNNN 65
LFG G+ N N ++ N+L P P+G FG N +
Sbjct: 40 LFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGGLFGATNNTTS 99
Query: 66 KPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNAQQNNGAGKLFGNSGG 125
K +LFGNNNA+ N ST +T LFSG + A G LFGNS
Sbjct: 100 KSAGSLFGNNNATAN---------------STGSTGLFSGSNNIASSTQNGG-LFGNSNN 143
Query: 126 QQTATGISFGNNPSATTNNTFQSNGLNTQQSGGLFGNKSNN---GGSLFGNTPXXXXXXX 182
NN ++TT N GGLFG + G LFGN+
Sbjct: 144 ----------NNITSTTQN------------GGLFGKPTTTPAGAGGLFGNSSSTNST-- 179
Query: 183 XXXXXXXXXXVPKTSLFGNXXXXXXXXXXXXXKPTTNSTGLF--NVSXXXXXXXXXXXXT 240
T LFG+ + + GLF N + +
Sbjct: 180 -------------TGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMS 226
Query: 241 NNPYGLQLS--PNPVLSMPESITTSLSN-------ERKPVSDSKQNRKFSTASSVISNNI 291
NPYG+ +S P V MP SIT+SLS+ E KP+ + R +S +SSV N
Sbjct: 227 TNPYGINISNVPMAVADMPRSITSSLSDVNGKSDAEPKPIEN---RRTYSFSSSVSGNAP 283
Query: 292 LPPTGNSTLIGKLTSRLKNLKSRETTHGLFSPSNKNLAQQDTFSA-LSRDESKEKGKNIN 350
LP S+L+ +L++RLK + + + +FSPS SA L D K ++
Sbjct: 284 LPLASQSSLVSRLSTRLKATQKSTSPNEIFSPSYSKPWLNGAGSAPLVDDFFSSKMTSLA 343
Query: 351 NKTNSL--------ASYFNQDVSSMKKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDH 402
NS+ S D++ ++KL ID++RSAAKK+KL +G + T DE+D
Sbjct: 344 PNENSIFPQNGFNFLSSQRADLTELRKLKIDSNRSAAKKLKLLSGTPAITKKHMQDEQDS 403
Query: 403 KISIP--------------RNDKLLFSAHXXXXXXXXXXXXVCLDEEHKITNKATD---Y 445
+ P D L + + D E+ + ++ + Y
Sbjct: 404 SENEPIANADSVTNIDRKENRDNNLDNTYLNGKEQSNNLNK--QDGENTLQHEKSSSFGY 461
Query: 446 WCSPTIEQLEQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDF-EELFGRTIIFN 504
WCSP+ EQLE+L+ QL V NFVIGR+ +G I+F ++VDLTAF F EELFG+ +IF
Sbjct: 462 WCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFR 521
Query: 505 ENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQYFVKRLR 564
++TVEVYPD KP +G+G+NVPA ITLENVYP+DKKTK+P+KD +K AE Q F ++LR
Sbjct: 522 SSKTVEVYPDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLR 581
Query: 565 NMKEMEFISYNPFGGIWTFRVKHFSVWGXXXXXXXXXXXXXXXXXXXXXXXXXPLAFPKR 624
+M+EM +ISYNPFGG WTF+V HFS+WG
Sbjct: 582 SMREMNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEIDEDDL------------------ 623
Query: 625 RHSVKKSSTSLEAEVPSNADLTAAEALAMEKEXXXXXXXXXXXXXXXMSLIIKEKPYEPS 684
S E P T A++ +KE I++EK YEP
Sbjct: 624 ------SKQEDGGEQPLRKVRTLAQSKPSDKEVILKTDGTFGTLSGKDDSIVEEKAYEP- 676
Query: 685 DLDEDDLNILEAAPKLVTSSNWLQQLQLAGTSKQSVYSKPLLLKNTQGNSLDDILFPSFK 744
DL + D +EA+PKL S +W++QL LAG+S +SV++ N + D+LF
Sbjct: 677 DLSDADFEGIEASPKLDVSKDWVEQLILAGSSLRSVFATSKEFDGPCQNEI-DLLFSECN 735
Query: 745 KDLLTYQSVKRERRINSHMWFAKFNINGQLLLKDPSQLSGCKQIVFQSNLPINKSSFDNV 804
++ + + +ERR + FAKF+ LL KD SG + L K FD+V
Sbjct: 736 DEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQ-RKFLFDDV 794
Query: 805 F--ASYLNTSIVNSRPNGYPLVGKCSLQFDNLASAYSDVPNEDKILKLASILFDPLSLPY 862
+ +I + N YP + + SL F + ++ + KL+SILFDP+S PY
Sbjct: 795 YLDKEIEKVTIEARKSNPYPQISESSLLFKDALDYMEKTSSDYNLWKLSSILFDPVSYPY 854
Query: 863 AVNSPEVEKVLIKKQRHAKLCGWIVDETRAEIDSML-STASDIQKILLFLSVNDIVNASK 921
++ +V+ L+KK+RH +L WIV + EI+ + +++++I++I L+L +ND+V ASK
Sbjct: 855 KTDNDQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEIEQIFLYLLLNDVVRASK 914
Query: 922 TAIISKNKHLSVLITLLGSNDPIVREIAQLQLTKWKSLGSIVDPTVISIYQLLTGNPFAS 981
AI SKN HLSVLI+ LGSNDP +R++A+LQL KW + G +D + IY+LL+G+PF
Sbjct: 915 LAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYKLLSGSPFEG 974
Query: 982 TALVNE-SNKFSRLVNLGLQVYYGDIDSLTLEDLI---MNAISNPFVDTSSVSTFENLSM 1037
+ E ++FS L L L + YG ID +LE L+ ++ S P+ D V
Sbjct: 975 LFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDDPIGV-------- 1026
Query: 1038 NIMKLFACPTIPVEQLLDELRSHSEIFDVRLCWFFTHMLQ---REDITEHLRDRITLEFI 1094
I +L+A E+L E+R + DV+ CW+ L+ ++ D T F
Sbjct: 1027 -IFQLYAA-NENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFA 1084
Query: 1095 DQLKLDRMHKEALFVACFIADDAIAKNTIDLLLSSEILYFTSNDIKPILERLQISAPIIH 1154
QL+ ++H +LFV+CF+ DD A++TI L+ EI ++ IL RL+I + +I
Sbjct: 1085 AQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRASTNDHILNRLKIPSQLIF 1144
Query: 1155 RHLALYEKYSGDHLSEVSNLLKAGDFKEAELVTITTVGPKLII-NAKWNNDYLSVLETLL 1213
AL ++Y G++LSEV NLL + AE+ +T++GP+L++ N N+ L L +L
Sbjct: 1145 NAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREIL 1204
Query: 1214 QRFPSHTIPTWEKGLGVYEKYIKLSLHNSLDPNIIHQLINTLPNLCKDYSH-HELVNVAS 1272
FP W + V+E Y+KL L N I LI+ + Y H E+ +
Sbjct: 1205 NEFPDSERDKWSVSINVFEVYLKLVLDNVETQETIDSLISGMKIFYDQYKHCREVAACCN 1264
Query: 1273 SRISEAVSELFLINLNMLSRKIPKESLLSLPLGQPESNYLK 1313
E VS+ ++ N S K LL LPLGQPE YL+
Sbjct: 1265 VMSQEIVSK--ILEKNNPSIGDSKAKLLELPLGQPEKAYLR 1303
>SPAC1486.05 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1778
Score = 164 bits (415), Expect = 9e-40
Identities = 164/638 (25%), Positives = 261/638 (40%), Gaps = 74/638 (11%)
Query: 2 FGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTL-STPSPGNPTGFGNA 60
F K S FG G N NTGT + L + G TGFG++
Sbjct: 328 FNQQKPAFSGFGSTTNTTNTGTGTGLFGS-NNATNTGTGQTTGGLFGGAATGTGTGFGSS 386
Query: 61 -----QNNNNKP-----GLNLFG----NNNASQNTPQTNSL---------FQPNNAAAST 97
N NN+P G LFG NN A+ NT T++ F NN AA+
Sbjct: 387 TGGFGSNTNNQPNSGTMGTGLFGFGANNNTANNNTAPTSTFGGNNSSNFSFGANNNAATK 446
Query: 98 PN--------TSLFSGPGSNAQQNNGAGK-LFGNSGG---QQTATGISFGNNPSATTNNT 145
P+ T+ SG S Q N A K FG++ + TG+ G A TN
Sbjct: 447 PSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTATTAPKPAGTGLFGGLGAGANTNTA 506
Query: 146 FQSNGLNTQQSGGLFGNKSNNGGSLFG--NTPXXXXXXXXXXXXXXXXXVPKTSLFG-NX 202
+ G G LFGN + G ++FG N+ T LFG N
Sbjct: 507 TNATGTG----GSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSNN 562
Query: 203 XXXXXXXXXXXXKPTTNSTGLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITT 262
KP+T + GLF T+ +G + N + + T
Sbjct: 563 ANTTNTGGSLFNKPSTTTGGLFG----NTTAQQPSTTTSGLFGASNTNNQ--AQTSNFGT 616
Query: 263 SL------SNERKPVSDSKQNRKFSTAS--SVISNNILPPTGNSTLIGKLTSRLKNLKSR 314
L +++P+ S + S ++ + P + + LTS+ K+
Sbjct: 617 GLFGGSQAGQQQQPLQASIDQNPYGNNPLFSSTTSQVAPTSIQEPIASPLTSKPTPKKAA 676
Query: 315 ETTHGLFSPSNKNLAQQDTFSALSRDESKEKGKNINNKTNSLASYFNQDVSSMKKLTIDT 374
SP + N A+ + S+ ++ + + + K SL + + + + T
Sbjct: 677 SLPQFWLSPRSHNTARLASISSFAKS-AVMNSTSASGKPKSLHLFDSLNDDVLLSADAFT 735
Query: 375 DRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXXXXVCLDE 434
R KK+ + + S I+++ + + + +
Sbjct: 736 PRQNIKKLVITHKISKDDILQN--------GVKNGNDAKSDSKVQEKAPQNEADGSLKKD 787
Query: 435 EHKITNKATDYWCSPTIEQLEQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFE 494
EH + + DYW P+IE+L + + +L V F +GR +G ++F VDL+ F + E
Sbjct: 788 EHVVLSD--DYWMKPSIEELSKYPKEKLCSVHQFSVGRTGYGQVAFLKPVDLSGF-EKLE 844
Query: 495 ELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIA 554
++ G+ ++F E + VYP + P +G G+NVPA ITLE +P+ ++T+EPIKD
Sbjct: 845 DIPGKVVVF-ERKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPR 903
Query: 555 EVQYFVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVWG 592
+Q+ VKRL +K+ EFI +N G W F+V+HFS +G
Sbjct: 904 YIQH-VKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYG 938
Score = 95.5 bits (236), Expect = 5e-19
Identities = 113/449 (25%), Positives = 200/449 (44%), Gaps = 55/449 (12%)
Query: 844 EDKILKLASILFDP--LSLPYAVNSPEVEKVLIKKQRHAKLCGWIVDETRAEIDSMLSTA 901
E + L SILFDP SLP ++S E +VL +K L WI E ++ A
Sbjct: 1269 ESIVWDLTSILFDPKNYSLPSELSS-EAREVLYQKLVRESLSEWITKTLEHETTTLAKEA 1327
Query: 902 -SDIQKILLFLSVNDIVNASKTAIISKNKHLSVLITLLGSNDPIVREIAQLQLTKWKSLG 960
+ ++I + L+ N I A + A+ S+N LS LI L+ S+ I +E+ Q QL +W+ G
Sbjct: 1328 ETSEERIYILLTGNLIGQACEEAVQSQNNRLSTLIPLVNSDVDIQQEVKQ-QLEEWRKHG 1386
Query: 961 SI--VDPTVISIYQLLTGNPFASTALVNESNK-----------FSRLVNLGLQVYY---- 1003
+ ++ I++LL+GN + + ++ + L GL+++Y
Sbjct: 1387 DLPFINKFTRLIFELLSGNTDIAEGCGTKGDEDYVQSIPITKNMTWLRAFGLKLWYNTDI 1446
Query: 1004 --GDIDSLTLEDLI-MNAISNPFVDTSSVSTFE--NLSMNIMKLFACPTIPVEQLLDELR 1058
G+ L +E L I + TS+V E ++ ++K +A T E + E
Sbjct: 1447 SIGEAMQLYVESLQKFPEIMQKPIATSAVQGIEVYDIIYLLLKAYAMGTSLEELTIPESA 1506
Query: 1059 SHSEIFDVRLCWFFTHMLQRE-------------DITEHLR------DRITLEFIDQLKL 1099
S + + R+ W L + ++ E L+ D++TL + QL+
Sbjct: 1507 KCSPL-NYRVVWQLAIYLSKARSLCDFSDRVVDINMAEDLKPISVHSDQLTLAYASQLEA 1565
Query: 1100 DRMHKEALFVACFIADDAIAKNTIDLLLSSEILYFTSNDIKPILERLQISAPIIHRHLAL 1159
+LFV + + +TI L+ + ++E+L I ++ AL
Sbjct: 1566 SGQWLWSLFVLLHLENVETRTSTITSCLARNLRGGLGAGAVEMIEKLCIPESWLNEAKAL 1625
Query: 1160 YEKYSGDHLSEVSNLLKAGDFKEAELVTITTVGPKLIINAKWNNDYLSVLETLLQRFPSH 1219
Y +Y GDHL+E+ L +A +++A V + T+ P+ +I+ + L+ L+ F
Sbjct: 1626 YARYVGDHLNELYFLQEAALYEDAHKVLLDTLAPQAVISGN-----KTQLKKALEGFNGQ 1680
Query: 1220 T--IPTWEKGLGVYEKYIKLSLHNSLDPN 1246
T + +W G +Y Y+ L L + D N
Sbjct: 1681 TDGLASWRFGGQIYSDYLDL-LEGNFDAN 1708
Score = 60.5 bits (145), Expect = 2e-08
Identities = 53/150 (35%), Positives = 69/150 (45%), Gaps = 27/150 (18%)
Query: 39 TLFSANTLSTPSPGNPTGFGNAQNNNNKPGLNLFGNNNA-SQNTPQTN----------SL 87
T F N T + N T FG + N PG LFG +A NT T L
Sbjct: 250 TPFGQNLSGTTN--NATPFGTSNATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGL 307
Query: 88 FQPNNAAASTPNTSLFSGPGSNAQQNNGAGKLFG---NSGGQQTATGISFGNNPSATTNN 144
F NN STP+T LF G N Q+ +G FG N+ T TG+ FG+N +AT
Sbjct: 308 FGQNNNTTSTPSTGLFGGSTFNQQKPAFSG--FGSTTNTTNTGTGTGL-FGSN-NATNTG 363
Query: 145 TFQSNGLNTQQSGGLFGNKSNNGGSLFGNT 174
T Q+ +GGLFG + G+ FG++
Sbjct: 364 TGQT-------TGGLFGGAATGTGTGFGSS 386
Score = 55.8 bits (133), Expect = 4e-07
Identities = 68/262 (25%), Positives = 82/262 (30%), Gaps = 47/262 (17%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFS--ANTLSTPSPGNPTGFG 58
MFG + P + G N NTGT FS +N ST TG G
Sbjct: 90 MFGQSNTP-AFGGTNNATNPSGGGLFGSNTANNNANTGTSFSFGSNAGSTGFGSQGTGGG 148
Query: 59 NAQNNNNKPGLNLFGNNN-ASQNTPQTNSLFQPNNAAAS-----TPNTSLFSG----PGS 108
++ N FG + S N N P A S T TS+F P
Sbjct: 149 LFGSSTTPATTNAFGTSGFVSSNANAVNGTANPPYAVTSEKDPQTNGTSVFQSITCMPAY 208
Query: 109 NAQ-------QNNGAGKLFGNSGGQQTATGIS-----------FGNNPSATTNNTF---Q 147
+ Q+ G+ FGN+ T + FG N S TTNN
Sbjct: 209 RSYSFEELRLQDYNQGRRFGNASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFGT 268
Query: 148 SNGLNTQQSGGLFGNKSNNGGSLFGNTPXXXXXXXXXXXXX--------XXXXVPKTSLF 199
SN NT GLFG GGS FG+ P T LF
Sbjct: 269 SNATNTTPGSGLFG-----GGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLF 323
Query: 200 GNXXXXXXXXXXXXXKPTTNST 221
G TTN+T
Sbjct: 324 GGSTFNQQKPAFSGFGSTTNTT 345
>YKL068w [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 959
Score = 136 bits (343), Expect = 2e-31
Identities = 169/661 (25%), Positives = 245/661 (36%), Gaps = 120/661 (18%)
Query: 31 LNGKPNTGTLFSANTLSTPSPGNPTGFGN---------------------AQNNNNKP-- 67
+NG N ANT S + G G N QNN +P
Sbjct: 311 INGNNNNSLFGKANTFSNSASGGLFGQNNQQQGSGLFGQNSQTSGSSGLFGQNNQKQPNT 370
Query: 68 ------GLNLFGNNNASQNTPQ----------TNSLFQPNNAAASTPNTSLFSG---PGS 108
G+ LFG NN Q T SLF N+ ST SLF P S
Sbjct: 371 FTQSNTGIGLFGQNNNQQQQSTGLFGAKPAGTTGSLFGGNS---STQPNSLFGTTNVPTS 427
Query: 109 N--AQQNN---GAGKLF-----GNSGGQQTATGIS-FGNNPSATTNNTFQSNGLNTQ--Q 155
N +QQ N GA KL GN Q+ +G S FG P++TT + F +N +T
Sbjct: 428 NTQSQQGNSLFGATKLTNMPFGGNPTANQSGSGNSLFGTKPASTTGSLFGNNTASTTVPS 487
Query: 156 SGGLFGNKSNN----------------------GGSLFGNTPXXXXXXXXXXXXXXXXXV 193
+ GLFGN +NN GG LFGN+
Sbjct: 488 TNGLFGNNANNSTSTTNTGLFGAKPDSQSKPALGGGLFGNS-NSNSSTIGQNKPVFGGTT 546
Query: 194 PKTSLFG----NXXXXXXXXXXXXXKPTTNSTGLFNVSXXXXXXXXXXXXTNNPYGLQLS 249
T LFG N T + G NV T LQ +
Sbjct: 547 QNTGLFGATGTNSSAVGSTGKLFGQNNNTLNVGTQNVPPVNNTTQNALLGTTAVPSLQQA 606
Query: 250 PNP------VLSMPESITTSLSNERKPVS-DSKQNRKFSTASSVISNNILPPTGNSTLI- 301
P +S+P SIT + V+ D K+N ++A + + P+ N
Sbjct: 607 PVTNEQLFSKISIPNSITNPVKATTSKVNADMKRNSSLTSAYRLAPKPLFAPSSNGDAKF 666
Query: 302 ---GKLTSRLKNLKSRETTHGLFSPSNKNLAQQDTFSALSRDESKEKGKNINNKTNSLAS 358
GK R + T++ + P + L D D K I N N
Sbjct: 667 QKWGKTLERSD--RGSSTSNSITDPESSYLNSNDLL--FDPDRRYLKHLVIKNNKNLNVI 722
Query: 359 YFNQDVSSMKKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHX 418
N D +S KL T SA+K + SS+ + EK H D S
Sbjct: 723 NHNDDEASKVKLVTFTTESASKDDQA----SSSIAASKLTEKAHSPQTDLKDDHDESTPD 778
Query: 419 XXXXXXXXXXXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLTENQLTVVP 466
+ + E KI++K +Y+ SP+IE L + +L +
Sbjct: 779 PQSKSPNGSTSIPMIENEKISSKVPGLLSNDVTFFKNNYYISPSIETLGNKSLIELRKIN 838
Query: 467 NFVIGRKNFGSISFDYEVDLTAFMDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVN 526
N VIG +N+G + F VDL + L G + F ++ +Y + KP+ G G+N
Sbjct: 839 NLVIGHRNYGKVEFLEPVDL--LNTPLDTLCGDLVTFGP-KSCSIYENCSIKPEKGEGIN 895
Query: 527 VPATITLENVYPIDKKTKEPIKDNSKIAEVQYFVKRLRNMKEMEFISYNPFGGIWTFRVK 586
V +TL + +PIDK+T++PIK N ++ + +L+ +F SY+P G +++ +
Sbjct: 896 VRCRVTLYSCFPIDKETRKPIK-NITHPLLKRSIAKLKENPVYKFESYDPVTGTYSYTID 954
Query: 587 H 587
H
Sbjct: 955 H 955
Score = 60.5 bits (145), Expect = 2e-08
Identities = 91/373 (24%), Positives = 133/373 (35%), Gaps = 50/373 (13%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTLSTPSPGNPTGFGNA 60
MFGNN+ +FG G + +PN+ LF GN N+
Sbjct: 1 MFGNNRP---MFGGSNLSFGSNTSSFG-GQQSQQPNS--LF----------GNSNNNNNS 44
Query: 61 QNNNNKPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNAQQNNGAGKL- 119
+NN + G F + S +NSLF NN T N F G A QN+ G L
Sbjct: 45 TSNNAQSGFGGFTSAAGS----NSNSLFGNNN----TQNNGAF-GQSMGATQNSPFGSLN 95
Query: 120 -----FGNSGGQQTATGISFGNNPSATTNNTFQSNGLNTQQSGGLFGNKSNNGGSLFGNT 174
GN+ G ++ G SFG N TNN F +N +T G NK N GG+LFG+
Sbjct: 96 SSNASNGNTFGGSSSMG-SFGGN----TNNAFNNNSNSTNSPFGF--NKPNTGGTLFGSQ 148
Query: 175 PXXXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXXXXXXXXKPTTNSTGLFNVSXXXXXXX 234
T FGN +N G N S
Sbjct: 149 NNNSAGTSSLFGGQSTST---TGTFGNTGSSFGTGLNGNG---SNIFGAGNNSQSNTTGS 202
Query: 235 XXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFSTASSVI--SNNIL 292
++ +G + T + + + S K + S+ SNN L
Sbjct: 203 LFGNQQSSAFGTNNQQGSLFGQQSQNTNNAFGNQNQLGGSSFGSKPVGSGSLFGQSNNTL 262
Query: 293 PPTGNSTLIGKLTSRLKNLKSRETTHGLFSPSNKNLAQQDTFSALSRDESKEKGKNINNK 352
T N+ L ++ + + GLF ++ N + Q F + ++ + G N NN
Sbjct: 263 GNTTNNR--NGLFGQMNSSNQGSSNSGLFGQNSMNSSTQGVFGQ-NNNQMQINGNN-NNS 318
Query: 353 TNSLASYFNQDVS 365
A+ F+ S
Sbjct: 319 LFGKANTFSNSAS 331
>YMR047c [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1113
Score = 135 bits (340), Expect = 4e-31
Identities = 168/688 (24%), Positives = 245/688 (35%), Gaps = 112/688 (16%)
Query: 2 FGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTLSTPSPGNPTGFGNAQ 61
FG + G LFG +G ++F N S G G N Q
Sbjct: 431 FGQPQQQGGLFGSKPAGGLFGQQQGASTFASGNAQNNSIFGQNNQQQQSTGGLFGQQNNQ 490
Query: 62 NNNNKPGLNLFGNNNASQNTP-QTNSLFQP---NNAAASTP----NTSLFSGPGSNAQQN 113
+ + GL FG N + N P N L QP N+ + P NTSLFS +N
Sbjct: 491 SQSQPGGL--FGQTNQNNNQPFGQNGLQQPQQNNSLFGAKPTGFGNTSLFSNSTTNQSNG 548
Query: 114 NGAGKLFGNSGG-----QQTATGISFGNNPSATT------NNTFQSNGLNTQQSGGLFGN 162
L SGG QQ A+G FG+ PS T NN + SGGLFG+
Sbjct: 549 ISGNNLQQQSGGLFQNKQQPASGGLFGSKPSNTVGGGLFGNNQVANQNNPASTSGGLFGS 608
Query: 163 KSNNGGSLFGNTPXXXXXXXXXX------XXXXXXXVPKTSLFGNXXXXXXXXXXX---- 212
K G SLFG T T LFGN
Sbjct: 609 KPATG-SLFGGTNSTAPNASSGGIFGSNNASNTAATTNSTGLFGNKPVGAGASTSAGGLF 667
Query: 213 ------XXKPTTNSTGLFNVSXXXXXXXXXXXXTNNPY----GLQLSPNPVLSMPESITT 262
+ STGLF + NN G L P SM +S
Sbjct: 668 GNNNNSSLNNSNGSTGLFGSNNTSQSTNAGGLFQNNTSTNTSGGGLFSQPSQSMAQSQNA 727
Query: 263 SLSNERKPVSDSKQNRKFST----ASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETTH 318
+++ + N + T + + ++N + P S K R K S +
Sbjct: 728 LQQQQQQQRLQIQNNNPYGTNELFSKATVTNTVSYPIQPSATKIKADERKK--ASLTNAY 785
Query: 319 GLFSPSNKNLAQQDTFSALSRDESKEKGK---NINNKTNSLAS----------------- 358
+ + + S + + + K K +I+ K N +A
Sbjct: 786 KMIPKTLFTAKLKTNNSVMDKAQIKVDPKLSISIDKKNNQIAISNQQEENLDESILKASE 845
Query: 359 -YFNQDVSSMKKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEK----------DHKISIP 407
FN D S K L + A + K ++ K E+ D K +
Sbjct: 846 LLFNPDKRSFKNLINNRKMLIASEEKNNGSQNNDMNFKSKSEEQETILGKPKMDEKETAN 905
Query: 408 RNDKLLFSAHXXXXXXXXXXXXVCLDEEHKIT-------------NKAT----------- 443
++++ S+ +DEE+K KA
Sbjct: 906 GGERMVLSSKNDGEDSATKHHSRNMDEENKENVADLQKQEYSEDDKKAVFADVAEKDASF 965
Query: 444 ---DYWCSPTIEQLEQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFEELFGRT 500
+Y+ SP+++ L + QL VP+ V+G K++G I F VDL G
Sbjct: 966 INENYYISPSLDTLSSYSLLQLRKVPHLVVGHKSYGKIEFLEPVDLAGIP---LTSLGGV 1022
Query: 501 IIFNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKD-NSKIAEVQYF 559
II E +T +Y + N+P G G+NV A IT N YP+DK T++PIKD N ++ V+
Sbjct: 1023 IITFEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKDPNHQL--VKRH 1080
Query: 560 VKRLRNMKEMEFISYNPFGGIWTFRVKH 587
++RL+ +F SY+ G + F V H
Sbjct: 1081 IERLKKNPNSKFESYDADSGTYVFIVNH 1108
Score = 61.6 bits (148), Expect = 8e-09
Identities = 71/202 (35%), Positives = 79/202 (38%), Gaps = 36/202 (17%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNG-----KPNTGTLFSANTLSTPSPG-NP 54
MFG G FG N KP T NT + P+ G N
Sbjct: 215 MFGTGTGSGGGFGSGATNSTGLFGSSTNLSGNSAFGANKPATSGGLFGNTTNNPTNGTNN 274
Query: 55 TGFGNAQNNNNKPGL-----NLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSG---P 106
TG QN+N GL N FG NN S + Q N A T SG
Sbjct: 275 TGLFGQQNSNTNGGLFGQQQNSFGANNVSNG----GAFGQVNRGAFPQQQTQQGSGGIFG 330
Query: 107 GSNAQQNNGA-------GKLFG---NSGG--QQTATGISFG--NNPSATTNNTFQSNGLN 152
SNA N GA G LFG SGG Q+A +FG NP+ TT F N
Sbjct: 331 QSNANANGGAFGQQQGTGALFGAKPASGGLFGQSAGSKAFGMNTNPTGTTGGLFGQT--N 388
Query: 153 TQQS-GGLFGNKSN-NGGSLFG 172
QQS GGLFG + N N G LFG
Sbjct: 389 QQQSGGGLFGQQQNSNAGGLFG 410
Score = 54.3 bits (129), Expect = 1e-06
Identities = 49/156 (31%), Positives = 61/156 (38%), Gaps = 19/156 (12%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTLSTPSP---GNPTGF 57
+FG+ A GSLFG G N NT ++ L P G T
Sbjct: 605 LFGSKPATGSLFGGTNSTAPNASSGGIFG-SNNASNTAATTNSTGLFGNKPVGAGASTSA 663
Query: 58 GNAQNNNNKPGLN-------LFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNA 110
G NNN LN LFG+NN SQ+T LFQ NN + +T LFS P +
Sbjct: 664 GGLFGNNNNSSLNNSNGSTGLFGSNNTSQST-NAGGLFQ-NNTSTNTSGGGLFSQPSQSM 721
Query: 111 QQNNGAGKLFGNSGGQQTATGISFGNNPSATTNNTF 146
Q+ A + QQ + NN TN F
Sbjct: 722 AQSQNALQ------QQQQQQRLQIQNNNPYGTNELF 751
Score = 53.1 bits (126), Expect = 3e-06
Identities = 48/135 (35%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 48 TPSPGNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPG 107
T G T F N Q N G + GNNN S + T LF A T SG G
Sbjct: 169 TSQNGTGTTFNNPQGTTNT-GFGIMGNNN-STTSATTGGLFGQKPATGMF-GTGTGSGGG 225
Query: 108 SNAQQNNGAGKLFGNS---------GGQQTAT-GISFGN---NPSATTNNTFQSNGLNTQ 154
+ N G LFG+S G + AT G FGN NP+ TNNT N+
Sbjct: 226 FGSGATNSTG-LFGSSTNLSGNSAFGANKPATSGGLFGNTTNNPTNGTNNTGLFGQQNSN 284
Query: 155 QSGGLFGNKSNNGGS 169
+GGLFG + N+ G+
Sbjct: 285 TNGGLFGQQQNSFGA 299
>7301054 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1601
Score = 122 bits (306), Expect = 4e-27
Identities = 150/628 (23%), Positives = 224/628 (34%), Gaps = 98/628 (15%)
Query: 29 GVLNGKPNTG----TLFSANTLSTP-------SPGNPTGFGNAQNNNNKPGLNLFGNNNA 77
G+ KP T T + +T STP + TG G + NKP + FG A
Sbjct: 439 GLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNKPATSGFGGFGA 498
Query: 78 SQNTPQTNSLFQPNNAAAST------PNTSLFSGPGSNAQQNNGAGKLFGNSGGQQTATG 131
+ P F N S P LF G G+ GA G GG T
Sbjct: 499 TSAAPLN---FNAGNTGGSLFGNTAKPGGGLFGG-GTTTLGGTGAAPTGGLFGGGTT--- 551
Query: 132 ISFGNNPSATTNNTFQSNGLNTQQSGGLFGNKSNNG-----------------GSLFGNT 174
SFG + F G N +GG+ G + G S +G++
Sbjct: 552 -SFGGVGGSLGGGGF-GMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQILARVTSPYGDS 609
Query: 175 PXXXXXXXXXXXXXXXXXVPKTS-----LFGNXXXXXXXXXXXXXK-----PTTNSTGLF 224
P P L N K T N LF
Sbjct: 610 PIFKDLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNNPAPMKVKALGSTLNRKSLF 669
Query: 225 NVSXXXXXXXXXXXXTNNPYGLQLSP--------NPVLSMPESITTSLSNERKPVSDSKQ 276
+ + L + P NP S+ + T S K + +K+
Sbjct: 670 DGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRP-KGATPNKE 728
Query: 277 NRKFSTASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETTHGLFSPSNKNLAQQDTFSA 336
FS A I + LPP GNS G R R + P+N +Q
Sbjct: 729 RESFSGA---IPSEPLPPAGNSP--GATNGRESQDNGRRESW--LHPNNLEKVRQHNIQT 781
Query: 337 LSRDESKEKGKNINN-------KTNSLASYFNQDVSSMKKLTIDTDRSAAKKMKLFNGHS 389
D+ +N T +S VS++ + + S + + F
Sbjct: 782 -GMDQGSPHNSTLNELVPRKPLDTYRPSSTVRLSVSTIPENPFEDQSSTIARRETFTSQQ 840
Query: 390 SATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXXXXVCLDEEHK--ITNKATDYWC 447
+ + + + S +L A DE H I + Y+
Sbjct: 841 ANESVLSNRSNEAEDSAANQSRLAIEAAAAEAAD---------DESHPTGIVLRRVGYYT 891
Query: 448 SPTIEQLEQ-LTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFEELFGRTIIFNEN 506
P+++ L L E+ VVPNF +GR+ +G++ F E+D+ D I+ N
Sbjct: 892 IPSLDDLRSYLAEDGSCVVPNFTVGREGYGNVFFGKEMDVAGLNLD-------EIVHFRN 944
Query: 507 RTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLR 564
+ + +YPD ENKP +G G+N A +TL+ V+P+DK E IKD ++ E+ + ++R+
Sbjct: 945 KEIIIYPDDENKPPIGQGLNRDAQVTLDQVWPLDKTKHEAIKDPQRLLEMDWEGKLRRVC 1004
Query: 565 NMKEMEFISYNPFGGIWTFRVKHFSVWG 592
+ + FI Y P G W FRVKHFS +G
Sbjct: 1005 DKNDTRFIEYRPETGSWVFRVKHFSKYG 1032
>Hs21264371 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1638
Score = 107 bits (268), Expect = 1e-22
Identities = 157/661 (23%), Positives = 236/661 (34%), Gaps = 116/661 (17%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPG-----NPTGFGNAQNN-NNKPGLNLFGNNNASQNTP 82
G+ P T + + ST + G N T FG + PG LFG N
Sbjct: 226 GLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPG-GLFGQQNQ----- 279
Query: 83 QTNSLFQP--------NNAAASTPNTSLFSGPGSNAQ------------------QNNGA 116
QT SLF N S NTS P +N N
Sbjct: 280 QTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTST 339
Query: 117 GKLFGNSGGQ--QTATGIS------FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSN-NG 167
G FG G QT TG FGNN T ++ S SGGLFG +N +G
Sbjct: 340 GTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGFGTNTSG 399
Query: 168 GSLFGNTPX-XXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXX--XXXXXXKP---TTNST 221
S+FG+ P + SLFGN P TT +T
Sbjct: 400 NSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTAT 459
Query: 222 GLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFS 281
F LQ N + P + N P+SD K+ +
Sbjct: 460 LGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN---PMSDPKKKEERL 516
Query: 282 TASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETT-------------------HGLFS 322
++ + L + L + +R++ K+ +TT +G F
Sbjct: 517 KPTNPAAQKALTTPTHYKLTPRPATRVRP-KALQTTGTAKSHLFDGLDDDEPSLANGAFM 575
Query: 323 PSN-------KNLAQQDTFSALSRD--------ESKEKGKNINNKTNSLASYFNQDVSSM 367
P KNL + FS ++RD E E G+ + + + QD
Sbjct: 576 PKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDED 635
Query: 368 KKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXX 427
++ AK + S+ + + D I L +
Sbjct: 636 SLVSHFYTNPIAKPIPQ-TPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFH 694
Query: 428 XXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLT-ENQLTVVPNFVIGRKN 474
D+ +I N + Y+ P+++ L ++T E +V +F IGRK
Sbjct: 695 DESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKG 754
Query: 475 FGSISFDYEVDLTAF-MDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITL 533
+GSI F+ +V+LT +DD I+ + V VY D KP VG G+N A +TL
Sbjct: 755 YGSIYFEGDVNLTNLNLDD--------IVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTL 806
Query: 534 ENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVW 591
+ V+P DK ++ IK ++A++ Y ++ + + +F Y P G W F+V HFS +
Sbjct: 807 DGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKY 866
Query: 592 G 592
G
Sbjct: 867 G 867
>Hs21264369 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 920
Score = 107 bits (268), Expect = 1e-22
Identities = 157/661 (23%), Positives = 236/661 (34%), Gaps = 116/661 (17%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPG-----NPTGFGNAQNN-NNKPGLNLFGNNNASQNTP 82
G+ P T + + ST + G N T FG + PG LFG N
Sbjct: 226 GLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPG-GLFGQQNQ----- 279
Query: 83 QTNSLFQP--------NNAAASTPNTSLFSGPGSNAQ------------------QNNGA 116
QT SLF N S NTS P +N N
Sbjct: 280 QTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTST 339
Query: 117 GKLFGNSGGQ--QTATGIS------FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSN-NG 167
G FG G QT TG FGNN T ++ S SGGLFG +N +G
Sbjct: 340 GTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGFGTNTSG 399
Query: 168 GSLFGNTPX-XXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXX--XXXXXXKP---TTNST 221
S+FG+ P + SLFGN P TT +T
Sbjct: 400 NSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTAT 459
Query: 222 GLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFS 281
F LQ N + P + N P+SD K+ +
Sbjct: 460 LGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN---PMSDPKKKEERL 516
Query: 282 TASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETT-------------------HGLFS 322
++ + L + L + +R++ K+ +TT +G F
Sbjct: 517 KPTNPAAQKALTTPTHYKLTPRPATRVRP-KALQTTGTAKSHLFDGLDDDEPSLANGAFM 575
Query: 323 PSN-------KNLAQQDTFSALSRD--------ESKEKGKNINNKTNSLASYFNQDVSSM 367
P KNL + FS ++RD E E G+ + + + QD
Sbjct: 576 PKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDED 635
Query: 368 KKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXX 427
++ AK + S+ + + D I L +
Sbjct: 636 SLVSHFYTNPIAKPIPQ-TPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFH 694
Query: 428 XXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLT-ENQLTVVPNFVIGRKN 474
D+ +I N + Y+ P+++ L ++T E +V +F IGRK
Sbjct: 695 DESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKG 754
Query: 475 FGSISFDYEVDLTAF-MDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITL 533
+GSI F+ +V+LT +DD I+ + V VY D KP VG G+N A +TL
Sbjct: 755 YGSIYFEGDVNLTNLNLDD--------IVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTL 806
Query: 534 ENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVW 591
+ V+P DK ++ IK ++A++ Y ++ + + +F Y P G W F+V HFS +
Sbjct: 807 DGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKY 866
Query: 592 G 592
G
Sbjct: 867 G 867
>Hs21264365 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1800
Score = 107 bits (268), Expect = 1e-22
Identities = 157/661 (23%), Positives = 236/661 (34%), Gaps = 116/661 (17%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPG-----NPTGFGNAQNN-NNKPGLNLFGNNNASQNTP 82
G+ P T + + ST + G N T FG + PG LFG N
Sbjct: 226 GLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPG-GLFGQQNQ----- 279
Query: 83 QTNSLFQP--------NNAAASTPNTSLFSGPGSNAQ------------------QNNGA 116
QT SLF N S NTS P +N N
Sbjct: 280 QTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTST 339
Query: 117 GKLFGNSGGQ--QTATGIS------FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSN-NG 167
G FG G QT TG FGNN T ++ S SGGLFG +N +G
Sbjct: 340 GTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGFGTNTSG 399
Query: 168 GSLFGNTPX-XXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXX--XXXXXXKP---TTNST 221
S+FG+ P + SLFGN P TT +T
Sbjct: 400 NSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTAT 459
Query: 222 GLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFS 281
F LQ N + P + N P+SD K+ +
Sbjct: 460 LGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN---PMSDPKKKEERL 516
Query: 282 TASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETT-------------------HGLFS 322
++ + L + L + +R++ K+ +TT +G F
Sbjct: 517 KPTNPAAQKALTTPTHYKLTPRPATRVRP-KALQTTGTAKSHLFDGLDDDEPSLANGAFM 575
Query: 323 PSN-------KNLAQQDTFSALSRD--------ESKEKGKNINNKTNSLASYFNQDVSSM 367
P KNL + FS ++RD E E G+ + + + QD
Sbjct: 576 PKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDED 635
Query: 368 KKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXX 427
++ AK + S+ + + D I L +
Sbjct: 636 SLVSHFYTNPIAKPIPQ-TPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFH 694
Query: 428 XXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLT-ENQLTVVPNFVIGRKN 474
D+ +I N + Y+ P+++ L ++T E +V +F IGRK
Sbjct: 695 DESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKG 754
Query: 475 FGSISFDYEVDLTAF-MDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITL 533
+GSI F+ +V+LT +DD I+ + V VY D KP VG G+N A +TL
Sbjct: 755 YGSIYFEGDVNLTNLNLDD--------IVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTL 806
Query: 534 ENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVW 591
+ V+P DK ++ IK ++A++ Y ++ + + +F Y P G W F+V HFS +
Sbjct: 807 DGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKY 866
Query: 592 G 592
G
Sbjct: 867 G 867
>Hs21264367 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1712
Score = 105 bits (263), Expect = 4e-22
Identities = 156/661 (23%), Positives = 236/661 (35%), Gaps = 116/661 (17%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPG-----NPTGFGNAQNN-NNKPGLNLFGNNNASQNTP 82
G+ P T + + ST + G N T FG + PG LFG N
Sbjct: 226 GLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPG-GLFGQQNQ----- 279
Query: 83 QTNSLFQP--------NNAAASTPNTSLFSGPGSNAQ------------------QNNGA 116
QT SLF N S NTS P +N N
Sbjct: 280 QTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTST 339
Query: 117 GKLFGNSGGQ--QTATGIS------FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSN-NG 167
G FG G QT TG FGNN T ++ S SGGLFG +N +G
Sbjct: 340 GTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGFGTNTSG 399
Query: 168 GSLFGNTPX-XXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXX--XXXXXXKP---TTNST 221
S+FG+ P + SLFGN P TT +T
Sbjct: 400 NSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTAT 459
Query: 222 GLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFS 281
F LQ N + P + N P+SD K+ +
Sbjct: 460 LGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN---PMSDPKKKEERL 516
Query: 282 TASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETT-------------------HGLFS 322
++ + L + L + +R++ K+ +TT +G F
Sbjct: 517 KPTNPAAQKALTTPTHYKLTPRPATRVRP-KALQTTGTAKSHLFDGLDDDEPSLANGAFM 575
Query: 323 PSN-------KNLAQQDTFSALSRD--------ESKEKGKNINNKTNSLASYFNQDVSSM 367
P KNL + FS ++RD E E G+ + + + QD
Sbjct: 576 PKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDED 635
Query: 368 KKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXX 427
++ AK + S+ + + D I L +
Sbjct: 636 SLVSHFYTNPIAKPIPQ-TPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFH 694
Query: 428 XXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLTENQ-LTVVPNFVIGRKN 474
D+ +I N + Y+ P+++ L ++T + +V +F IGRK
Sbjct: 695 DESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNVKGECIVSDFTIGRKG 754
Query: 475 FGSISFDYEVDLTAF-MDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITL 533
+GSI F+ +V+LT +DD I+ + V VY D KP VG G+N A +TL
Sbjct: 755 YGSIYFEGDVNLTNLNLDD--------IVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTL 806
Query: 534 ENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVW 591
+ V+P DK ++ IK ++A++ Y ++ + + +F Y P G W F+V HFS +
Sbjct: 807 DGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKY 866
Query: 592 G 592
G
Sbjct: 867 G 867
>HsM11120678 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1712
Score = 104 bits (260), Expect = 8e-22
Identities = 156/661 (23%), Positives = 235/661 (34%), Gaps = 116/661 (17%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPG-----NPTGFGNAQNN-NNKPGLNLFGNNNASQNTP 82
G+ P T + + ST + G N T FG + PG LFG N
Sbjct: 226 GLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPG-GLFGQQNQ----- 279
Query: 83 QTNSLFQP--------NNAAASTPNTSLFSGPGSNAQ------------------QNNGA 116
QT SLF N S NTS P +N N
Sbjct: 280 QTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTST 339
Query: 117 GKLFGNSGGQ--QTATGIS------FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSN-NG 167
G FG G QT TG FGNN T ++ S SGGLFG +N +G
Sbjct: 340 GTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGFGTNTSG 399
Query: 168 GSLFGNTPX-XXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXX--XXXXXXKP---TTNST 221
S+FG+ P + SLFGN P TT +T
Sbjct: 400 NSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTAT 459
Query: 222 GLFNVSXXXXXXXXXXXXTNNPYGLQLSPNPVLSMPESITTSLSNERKPVSDSKQNRKFS 281
F LQ N + P + N P+SD K+ +
Sbjct: 460 LGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRN---PMSDPKKKEERL 516
Query: 282 TASSVISNNILPPTGNSTLIGKLTSRLKNLKSRETT-------------------HGLFS 322
++ + L + L + +R++ K+ +TT +G F
Sbjct: 517 KPTNPAAQKALTTPTHYKLTPRPATRVRP-KALQTTGTAKSHLFDGLDDDEPSLANGAFM 575
Query: 323 PSN-------KNLAQQDTFSALSRD--------ESKEKGKNINNKTNSLASYFNQDVSSM 367
P KNL + FS ++RD E E G+ + + + QD
Sbjct: 576 PKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDED 635
Query: 368 KKLTIDTDRSAAKKMKLFNGHSSATIMKDMDEKDHKISIPRNDKLLFSAHXXXXXXXXXX 427
++ AK + S+ + + D I L +
Sbjct: 636 SLVSHFYTNPIAKPIPQ-TPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFH 694
Query: 428 XXVCLDEEHKITNKA------------TDYWCSPTIEQLEQLTEN-QLTVVPNFVIGRKN 474
D+ +I N + Y+ P+++ L ++T +V +F IGRK
Sbjct: 695 DESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNVFGECIVSDFTIGRKG 754
Query: 475 FGSISFDYEVDLTAF-MDDFEELFGRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITL 533
+GSI F+ +V+LT +DD I+ + V VY D KP VG G+N A +TL
Sbjct: 755 YGSIYFEGDVNLTNLNLDD--------IVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTL 806
Query: 534 ENVYPIDKKTKEPIKDNSKIAEVQY--FVKRLRNMKEMEFISYNPFGGIWTFRVKHFSVW 591
+ V+P DK ++ IK ++A++ Y ++ + + +F Y P G W F+V HFS +
Sbjct: 807 DGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKY 866
Query: 592 G 592
G
Sbjct: 867 G 867
>At1g59660 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 997
Score = 97.1 bits (240), Expect = 2e-19
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Query: 443 TDYWCSPTIEQL---EQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFEELFGR 499
++Y+ P I++L E++ + V +FV+GR +GSI F E D+ D E
Sbjct: 845 SEYFTEPRIQELAAKERVEQGYCKRVKDFVVGRHGYGSIKFLGETDVCRL--DLE----- 897
Query: 500 TIIFNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQYF 559
++ +NR V VY D KP VG G+N PA +TL N+ +DKKT + + ++ + +
Sbjct: 898 MVVQFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDKKTGTQVMEGERLDKYKEM 957
Query: 560 VKRLRNMKEMEFISYNPFGGIWTFRVKHFS 589
+KR + +F+SY+P G WTF+V+HFS
Sbjct: 958 LKRKAGEQGAQFVSYDPVNGEWTFKVEHFS 987
>At1g10390 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1043
Score = 93.6 bits (231), Expect = 2e-18
Identities = 56/152 (36%), Positives = 83/152 (53%), Gaps = 10/152 (6%)
Query: 441 KATDYWCSPTIEQL---EQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFEELF 497
+ +DY+ P I++L E+ V +FV+GR +GSI F E D+ D E L
Sbjct: 886 RQSDYFTEPRIQELAAKERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRL--DLESL- 942
Query: 498 GRTIIFNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQ 557
+ FN R V VY D KP VG G+N PA +TL N+ IDKKT + + ++ + +
Sbjct: 943 ---VQFN-TREVIVYMDESKKPAVGQGLNKPAEVTLLNIKCIDKKTGKQFTEGERVEKYK 998
Query: 558 YFVKRLRNMKEMEFISYNPFGGIWTFRVKHFS 589
+K+ + EF+S++P G W FRV+HFS
Sbjct: 999 MMLKKKAEAQGAEFVSFDPVKGEWKFRVEHFS 1030
>CE28184 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1652
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 444 DYWCSPTIEQLEQLTENQLTVVPN-FVIGRKNFGSISFDYEVDLTAFMDDFEELFGRTII 502
DY+ PTI +++ + +N V+ + +GR ++GS+ + V+L D I+
Sbjct: 753 DYFSLPTINEMKNMIKNGRVVLEDGLTVGRSSYGSVYWPGRVELKDVALD-------EIV 805
Query: 503 FNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQY--FV 560
+R V VYP+ E K G +N PA +TLE V+ DKKTK+ ++D K++E+ + +
Sbjct: 806 VFRHREVTVYPNEEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWREHL 865
Query: 561 KRLRNMKEMEFISYNPFGGIWTFRVKHFSVWG 592
+R F + G W FRV HFS +G
Sbjct: 866 ERQTIRMGAAFKDFRAETGSWVFRVDHFSKYG 897
>CE28183 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 955
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 444 DYWCSPTIEQLEQLTENQLTVVPN-FVIGRKNFGSISFDYEVDLTAFMDDFEELFGRTII 502
DY+ PTI +++ + +N V+ + +GR ++GS+ + V+L D I+
Sbjct: 753 DYFSLPTINEMKNMIKNGRVVLEDGLTVGRSSYGSVYWPGRVELKDVALD-------EIV 805
Query: 503 FNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQY--FV 560
+R V VYP+ E K G +N PA +TLE V+ DKKTK+ ++D K++E+ + +
Sbjct: 806 VFRHREVTVYPNEEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWREHL 865
Query: 561 KRLRNMKEMEFISYNPFGGIWTFRVKHFSVWG 592
+R F + G W FRV HFS +G
Sbjct: 866 ERQTIRMGAAFKDFRAETGSWVFRVDHFSKYG 897
>YGL172w [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 472
Score = 69.7 bits (169), Expect = 3e-11
Identities = 76/236 (32%), Positives = 93/236 (39%), Gaps = 30/236 (12%)
Query: 1 MFGNNKAP----GSLFGXXXXXXXXXXXXXXX--GVLNGK---PNTGTLFSANTLSTPSP 51
MFG NKA G LFG G G+ P+TG LF A +
Sbjct: 1 MFGLNKASSTPAGGLFGQASGASTGNANTGFSFGGTQTGQNTGPSTGGLFGAKPAGSTG- 59
Query: 52 GNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNAQ 111
G FG Q + N FG + + N +PNN A NT G A
Sbjct: 60 GLGASFGQQQQQSQT---NAFGGSATTGGGLFGN---KPNNTA----NTG---GGLFGAN 106
Query: 112 QNNGAGKLFGNSGGQQTATGISFGNNPSATTNNTFQSNGLNTQQSGGLFGNKSNNGGSLF 171
N+ +G LFG S QT+ G+ FGNN + NN+ S+G+N S GLFG+K G SLF
Sbjct: 107 SNSNSGSLFG-SNNAQTSRGL-FGNNNTNNINNS--SSGMNNA-SAGLFGSKPAGGTSLF 161
Query: 172 GNTPXXXXXXXXXXXXXXXXXVPKTSLFGNXXXXXXXXXXXXXKPTTNSTGLFNVS 227
GNT TSLFGN T +T LF S
Sbjct: 162 GNT--STSSAPAQNQGMFGAKPAGTSLFGNNAGNTTTGGGLFGSKPTGATSLFGSS 215
Score = 59.3 bits (142), Expect = 4e-08
Identities = 58/163 (35%), Positives = 75/163 (45%), Gaps = 38/163 (23%)
Query: 29 GVLNGKPNT-----GTLFSANTLSTPSPGNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQ 83
G+ KPN G LF AN S + G+ G NAQ + LFGNNN +
Sbjct: 86 GLFGNKPNNTANTGGGLFGAN--SNSNSGSLFGSNNAQTSRG-----LFGNNNTNNINNS 138
Query: 84 TNSLFQPNNAAA----STP--NTSLFSGPGSNAQ--QNNG------AG-KLFGNSGGQQT 128
++ + NNA+A S P TSLF +++ QN G AG LFGN+ G T
Sbjct: 139 SSGM---NNASAGLFGSKPAGGTSLFGNTSTSSAPAQNQGMFGAKPAGTSLFGNNAGNTT 195
Query: 129 ATGISFGNNPSATT------NNTFQSNGLNT--QQSGGLFGNK 163
G FG+ P+ T NN +N N SGGLFGN+
Sbjct: 196 TGGGLFGSKPTGATSLFGSSNNNNNNNNSNNIMSASGGLFGNQ 238
>At1g80680 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 1032
Score = 60.8 bits (146), Expect = 1e-08
Identities = 48/152 (31%), Positives = 69/152 (44%), Gaps = 16/152 (10%)
Query: 444 DYWCSPTIEQL---EQLTENQLTVVPNFVIGRKNFGSISFDYEVDLTAFMDDFEELFGRT 500
DY+ P I +L E + + + VP+F IGR +G I F D+ D F R
Sbjct: 39 DYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRFLGNTDVRRLDLDHIVKFHR- 97
Query: 501 IIFNENRTVEVYPDTENKPDVGYGVNVPATITLENVYPIDKKTKEPIKDNSKIAEVQYFV 560
V VY D +KP VG G+N A +TL P K+ + + Y +
Sbjct: 98 ------HEVIVYDDESSKPVVGEGLNKAAEVTLVVNIPDLTWGKQQVN------HIAYKL 145
Query: 561 KRLRNMKEMEFISYNPFGGIWTFRVKHFSVWG 592
K+ + FIS++P G+W F V HFS +G
Sbjct: 146 KQSTERQGATFISFDPDNGLWKFFVPHFSRFG 177
>CE10988_1 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 608
Score = 60.1 bits (144), Expect = 2e-08
Identities = 58/217 (26%), Positives = 82/217 (37%), Gaps = 32/217 (14%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTLSTPSPGNPTGFGNA 60
MFG + S+FG G G +T T ANT + FG+A
Sbjct: 1 MFGGSAPKPSIFGGTAATTTASS-----GFSFGNSSTST---ANTGGNTNTTGGFSFGSA 52
Query: 61 QNNNNKPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNAQQNNGAGKLF 120
Q + GL FGN+ A T S+F ++AAA P ++ G A + +F
Sbjct: 53 QPSTGSTGL--FGNSTA------TGSMFGGSSAAAPAPASAGIFGNSGAAAPAPASTSIF 104
Query: 121 GNSGGQQTATGISFG-------------NNPSATTNNTFQS--NGLNTQQSGGLFGNKSN 165
G+S ++FG N P+A T F S + T +GGLFG+ +
Sbjct: 105 GSSANSAAPATVTFGASAPSAGAGMFGANKPAAPTGGLFGSSTSTATTAPTGGLFGSSTA 164
Query: 166 NGGS-LFGNTPXXXXXXXXXXXXXXXXXVPKTSLFGN 201
S LFG+T P LFG+
Sbjct: 165 APSSGLFGSTAAPAAPGGLFGSTSTSTAAPSGGLFGS 201
>YGR119c [YU] KOG3091 Nuclear pore complex p54 component (sc Nup57)
Length = 541
Score = 58.9 bits (141), Expect = 5e-08
Identities = 59/163 (36%), Positives = 72/163 (43%), Gaps = 49/163 (30%)
Query: 52 GNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQTNSLF-----QPNNAAASTPN------T 100
G+ GFGN + G + FG NN + NT + S F QPN+ A+T T
Sbjct: 6 GSNNGFGNKPAGST--GFS-FGQNNNNTNTQPSASGFGFGGSQPNSGTATTGGFGANQAT 62
Query: 101 SLFSGPGSNAQQNNGAGKLFGN--------------SG---------GQQTAT------- 130
+ F GSN Q + G G LFGN SG GQQTA
Sbjct: 63 NTF---GSNQQSSTGGG-LFGNKPALGSLGSSSTTASGTTATGTGLFGQQTAQPQQSTIG 118
Query: 131 GISFGNNPSATTNNTFQSNGLNTQQ-SGGLFGNKSNNGGSLFG 172
G FGN P+ TT F ++ N SGGLFGNK + GSL G
Sbjct: 119 GGLFGNKPTTTTGGLFGNSAQNNSTTSGGLFGNKVGSTGSLMG 161
Score = 57.8 bits (138), Expect = 1e-07
Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 36/166 (21%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPGNPTG-FGN--AQNNNNKPGLNLFGN----------- 74
G+ KP G+L S++T ++ + TG FG AQ + G LFGN
Sbjct: 76 GLFGNKPALGSLGSSSTTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFG 135
Query: 75 NNASQNTPQTNSLFQPNNAAASTPNTSLFSGPGSNAQQNNGAGKLFGNSGGQQTAT-GIS 133
N+A N+ + LF N ST SL G + N AG LFG TAT G
Sbjct: 136 NSAQNNSTTSGGLF--GNKVGSTG--SLMGGNSTQNTSNMNAGGLFGAKPQNTTATTGGL 191
Query: 134 FGNNPSATTNNTFQSNGLNTQQSGGLFGNKSNN-----GGSLFGNT 174
FG+ P +T N GGLFG+ + N GG LFG +
Sbjct: 192 FGSKPQGSTTN------------GGLFGSGTQNNNTLGGGGLFGQS 225
Score = 54.3 bits (129), Expect = 1e-06
Identities = 56/183 (30%), Positives = 71/183 (38%), Gaps = 28/183 (15%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXX-GVLNGKPNTGTLFSANTLSTPSPGNPTGFGN 59
+FGN A GSL G +P T+ + P+ FGN
Sbjct: 77 LFGNKPALGSLGSSSTTASGTTATGTGLFGQQTAQPQQSTIGGGLFGNKPTTTTGGLFGN 136
Query: 60 AQNNNNKPGLNLFGNN----------NASQNTPQTNS--LF--QPNNAAAST-------P 98
+ NN+ LFGN N++QNT N+ LF +P N A+T P
Sbjct: 137 SAQNNSTTSGGLFGNKVGSTGSLMGGNSTQNTSNMNAGGLFGAKPQNTTATTGGLFGSKP 196
Query: 99 NTSLFSGP--GSNAQQNN--GAGKLFGNSGGQQTATGISFGNNPSATTNNTFQ--SNGLN 152
S +G GS Q NN G G LFG S QT T GN S + + S G N
Sbjct: 197 QGSTTNGGLFGSGTQNNNTLGGGGLFGQSQQPQTNTAPGLGNTVSTQPSFAWSKPSTGSN 256
Query: 153 TQQ 155
QQ
Sbjct: 257 LQQ 259
>YJL041w_1 [YU] KOG4719 Nuclear pore complex protein
Length = 590
Score = 54.3 bits (129), Expect = 1e-06
Identities = 45/137 (32%), Positives = 61/137 (43%), Gaps = 7/137 (5%)
Query: 29 GVLNGKPNTGTLFSANTLSTPSPGNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQTNSLF 88
G N PN +AN+ TP+ G+ GN N+ P N+FG+NN++ NT +NS
Sbjct: 44 GFNNSAPNNTN--NANSSITPAFGS-NNTGNTAFGNSNPTSNVFGSNNSTTNTFGSNSAG 100
Query: 89 QPNNAAASTPNTSLFSGPGSNAQQNNGAGKLFGNSGGQQTATGISFGNNPSATTNNTFQS 148
++S T G N G+ LF NS T T +FG NNT S
Sbjct: 101 TSLFGSSSAQQTKSNGTAGGN---TFGSSSLFNNSTNSNT-TKPAFGGLNFGGGNNTTPS 156
Query: 149 NGLNTQQSGGLFGNKSN 165
+ N S LFG +N
Sbjct: 157 STGNANTSNNLFGATAN 173
>SPAC22G7.09c [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 425
Score = 53.5 bits (127), Expect = 2e-06
Identities = 63/203 (31%), Positives = 73/203 (35%), Gaps = 41/203 (20%)
Query: 1 MFGNNKAPGSLFGXXXXXXXXXXXXXXXGVLNGKPNTGTLFSANTLSTPSPGNPTG---- 56
MFG NK P FG G+ + G ANT ++ G TG
Sbjct: 1 MFGLNKTPS--FGSTGTQNQNTGTSAGTGLFSSN-TFGNNTQANTPASTGFGGVTGGAFG 57
Query: 57 ----------FGNAQN-NNNKPGLNLFGNNNASQNTPQTNSLFQPNNAAASTPNTSLFSG 105
FGN N + PGLNLFG N Q P SLF + P LF+
Sbjct: 58 QTKPQTGGSLFGNKPNATSTTPGLNLFGQN--PQAAP-GGSLFGASTTKPQAPG-GLFNQ 113
Query: 106 PGSNAQQNNGA--GKLFGNSGGQQT--------ATGISFGNNPSATTNNTFQSNGLNTQ- 154
+ AQ A G LFG SG QT A FG + TT F N NT
Sbjct: 114 NQTQAQPAQAAPTGGLFGLSGQNQTQSQTQPAQANTSLFGQSNIGTTGGLFDQNRPNTST 173
Query: 155 --------QSGGLFGNKSNNGGS 169
S GLFG + GS
Sbjct: 174 FGQFSTQPASAGLFGQSTQPSGS 196
>CE23858 [YU] KOG3091 Nuclear pore complex p54 component (sc Nup57)
Length = 639
Score = 51.6 bits (122), Expect = 8e-06
Identities = 48/156 (30%), Positives = 69/156 (43%), Gaps = 25/156 (16%)
Query: 39 TLFSANT-----LSTPSPGNPTGFGNAQNNNNKPGLNLFGNNNASQNTPQTNSLFQPNNA 93
+LF ++T + P+P PT + P LFG+ + +TP SLF N
Sbjct: 2 SLFGSSTPQKQAFTFPTPNAPTTSSGTLFGSTTPSKPLFGSTAQASSTP---SLFGTTNT 58
Query: 94 AASTPNTSLFSGPGSNAQQNNGAGKLFGNSGGQQTATGISFGNN------PSATTNNTFQ 147
STP+ LF G++ + AG LFG + TAT FG + S+TT+
Sbjct: 59 --STPSGGLFGKTGTSTTTTSTAGTLFGAAPTTSTATPSLFGASTTGLFGTSSTTSGGLG 116
Query: 148 SNGLNTQQSG--------GLFGNKSNNGGSLFGNTP 175
G +TQQ+ F + + GSL GNTP
Sbjct: 117 GIG-STQQTAKSPVATRLAAFKSGTLGAGSLSGNTP 151
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,369,093
Number of Sequences: 60738
Number of extensions: 3126519
Number of successful extensions: 9548
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9082
Number of HSP's gapped (non-prelim): 120
length of query: 1319
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1201
effective length of database: 23,222,132
effective search space: 27889780532
effective search space used: 27889780532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)