ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV4951 good R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV4951 1694566 1696521 652
(652 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL184c [R] KOG0118 FOG: RRM domain 597 e-170
SPAC2F7.11 [R] KOG0118 FOG: RRM domain 350 3e-96
SPCC74.09 [R] KOG0118 FOG: RRM domain 210 6e-54
YML117w [R] KOG0118 FOG: RRM domain 165 2e-40
At3g14100 [R] KOG0118 FOG: RRM domain 60 8e-09
At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 53 2e-06
At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 52 4e-06
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 5e-06
>YPL184c [R] KOG0118 FOG: RRM domain
Length = 612
Score = 597 bits (1538), Expect = e-170
Identities = 302/490 (61%), Positives = 370/490 (74%), Gaps = 18/490 (3%)
Query: 164 SQEYLDYSTLQSASSEFLSPIPVNVMSAEPQDHMS-TVNMIAQFTAEANLPLSLQSGQLN 222
+ Y +Y + S F P NV+S D MS T+ A AN PL + + Q N
Sbjct: 137 NNRYYEYERSSNEVSPFDDENP-NVLS----DGMSPTIMATATAVTNANAPLPVNA-QAN 190
Query: 223 NPRDFTTAPSRTVYLGNIPATITYKALLDYVRTGVVEEVKILSEKMCAFVSFVDENDALL 282
NP +FT+APSRTVYLGN+P ++ K LLD+VR+GVVE+VKI+ EKMCAFVSF+DE+ ALL
Sbjct: 191 NPLNFTSAPSRTVYLGNVPPNLSVKELLDHVRSGVVEDVKIIPEKMCAFVSFIDESAALL 250
Query: 283 FHSDAILKRLNIDGRDIKIGWGKPQPIDPIVRAGIANDGATRNVYIGKLNTNKDSCEKWG 342
FHSDAILKRLNI RDIKIGWGKP IDPIV A I+ DGATRNVYIG++
Sbjct: 251 FHSDAILKRLNIGDRDIKIGWGKPTRIDPIVAARISTDGATRNVYIGRMTI--------- 301
Query: 343 ADPKEILVTKEKLYDDLSQFGEIESIKLVEDRGIAFVHFTSIFAAIKAVANIGSIDPYYS 402
+ +E +++E+L DL ++GEI+ IK+++++GIAF+HF SI AIK V N+ +PYY
Sbjct: 302 -EGEESHLSEEQLRVDLEEYGEIDCIKIIKEKGIAFIHFASILNAIKVVTNLPIRNPYYQ 360
Query: 403 NKKVFYGKDRCAFITKTQQHNVAQFLGIQPGMEALME-NNREXXXXXXXXXXXXXXXXXX 461
NK++FYGKDRCAFITKTQQHN AQFLG+QPGME ++E ++RE
Sbjct: 361 NKRIFYGKDRCAFITKTQQHNAAQFLGVQPGMEHMIEFSDREFISNALLQQSAAAAAIAT 420
Query: 462 XXXXXNNLGNRTVYLGNLPKNVKLEEICNAIRGGLLQNIKLLNDRHVCFVTFIDPTAAAQ 521
NNLGNRTVYLG+LPK+VK+EEICNA+RGGLLQ+IKLLNDR+VCFVTFIDPTAAAQ
Sbjct: 421 SAGGPNNLGNRTVYLGSLPKDVKIEEICNAVRGGLLQSIKLLNDRYVCFVTFIDPTAAAQ 480
Query: 522 FYAMSSLHGLTIHNKRCKIGWGKHSGPLPNPIALAVSRGASRNIYLGNINFEEDAKQEES 581
FYAMSSL+G T+ KRCK+GWGKHSGPLPN +ALAVS GASRN+Y+GNI+F D+ ++E
Sbjct: 481 FYAMSSLYGFTVQKKRCKVGWGKHSGPLPNALALAVSNGASRNVYVGNIDFVGDSLRDER 540
Query: 582 VFAEDTLRAIFEEFGTVEQINFLYEKNCCFINFANISNAILAIDKIKSNPHFNNLKINFG 641
VF E LR IF+++G VEQINFL EKNCCFIN+ NISNAILA+DKIKSNP+F +LKINFG
Sbjct: 541 VFTESNLRHIFQQYGEVEQINFLPEKNCCFINYTNISNAILALDKIKSNPYFKDLKINFG 600
Query: 642 KDRCGNVPRQ 651
KDRCGNVP Q
Sbjct: 601 KDRCGNVPHQ 610
>SPAC2F7.11 [R] KOG0118 FOG: RRM domain
Length = 529
Score = 350 bits (899), Expect = 3e-96
Identities = 187/432 (43%), Positives = 262/432 (60%), Gaps = 58/432 (13%)
Query: 228 TTAPSRTVYLGNIPATITYKALLDYVRTGVVEEVKILSEKMCAFVSFVDENDALLFHSDA 287
TT P +TVY+GN+P +L VRTG +E IL EK CAF+SF+D + A F DA
Sbjct: 110 TTQPVKTVYVGNLPPNTPIDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDA 169
Query: 288 ILKRLNIDGRDIKIGWGKPQPIDPIVRAGIANDGATRNVYIGKLNTNKDSCEKWGADPKE 347
LKRL I G ++K+GWGK + V + GA RNV++G L
Sbjct: 170 ALKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNG------------- 216
Query: 348 ILVTKEKLYDDLSQFGEIESIKLVEDRGIAFVHFTSIFAAIKAVANIGSIDPYYSNKKVF 407
+T++++ +DL FG I+ IK+V +R IAFVHF +I AAIKAV + ++P +S ++++
Sbjct: 217 --ITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL-PLNPKWSKRRIY 273
Query: 408 YGKDRCA-------FITKTQQHNVAQF--LGIQPGMEALMENNREXXXXXXXXXXXXXXX 458
YG+DRCA + +K Q V + +G P L + +
Sbjct: 274 YGRDRCAVGLKQPAYFSKGQVGVVGGYPVMGYPPPSPVLQKPDLIMT------------- 320
Query: 459 XXXXXXXXNNLGNRTVYLGNLPKNVKLEEICNAIRGGLLQNIKLLNDRHVCFVTFIDPTA 518
GNRTVY+GN+ + +EEICNA+RGGLL NI+ L ++H+CFVTF+DP +
Sbjct: 321 -----------GNRTVYIGNIHADTTIEEICNAVRGGLLHNIRYLQEKHICFVTFVDPVS 369
Query: 519 AAQFYAMSSLHGLTIHNKRCKIGWGKHSGPLPNPIALAVSRGASRNIYLGNINFEEDAKQ 578
A +F+ MS++HGL I N+R KIGWGKHSGPLP+ IALAV+ GASRNIY+GN
Sbjct: 370 AFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGN--------A 421
Query: 579 EESVFAEDTLRAIFEEFGTVEQINFLYEKNCCFINFANISNAILAIDKIKSNPHFNNLKI 638
++S+ E L+ FEEFG +E +NF EKNC F+NF ++++AI AID+IK + N +I
Sbjct: 422 DDSLTIE-RLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKKGYENYRI 480
Query: 639 NFGKDRCGNVPR 650
++GKDRCGN PR
Sbjct: 481 SYGKDRCGNPPR 492
Score = 112 bits (279), Expect = 2e-24
Identities = 68/189 (35%), Positives = 101/189 (52%), Gaps = 18/189 (9%)
Query: 226 DFTTAPSRTVYLGNIPATITYKALLDYVRTGVVEEVKILSEKMCAFVSFVDENDALLFHS 285
D +RTVY+GNI A T + + + VR G++ ++ L EK FV+FVD A F
Sbjct: 316 DLIMTGNRTVYIGNIHADTTIEEICNAVRGGLLHNIRYLQEKHICFVTFVDPVSAFRFFE 375
Query: 286 DAILKRLNIDGRDIKIGWGKPQ-PIDPIVRAGIANDGATRNVYIGKLNTNKDSCEKWGAD 344
+ + L I R +KIGWGK P+ + +A GA+RN+YIG + +
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAG-GASRNIYIGNADDS---------- 424
Query: 345 PKEILVTKEKLYDDLSQFGEIESIKLVEDRGIAFVHFTSIFAAIKAVANIGSIDPYYSNK 404
+T E+L +D +FGEIE + ++ AFV+FTS+ +AI A+ I Y N
Sbjct: 425 -----LTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQ-KKGYENY 478
Query: 405 KVFYGKDRC 413
++ YGKDRC
Sbjct: 479 RISYGKDRC 487
>SPCC74.09 [R] KOG0118 FOG: RRM domain
Length = 654
Score = 210 bits (534), Expect = 6e-54
Identities = 146/501 (29%), Positives = 243/501 (48%), Gaps = 67/501 (13%)
Query: 156 DMSSMHLPSQEYLDYSTLQSASSEFLSPIPV-----NVMSAEPQDHMS------TVNMIA 204
D SS+ PS Y + +++ F+ P+P N+ A+P + + T A
Sbjct: 129 DSSSVIYPSPPSTYYPNMYVSANTFI-PMPYAHYTDNMYHAKPVNRPNFLPREGTPPPFA 187
Query: 205 QFTAEANLPLSLQSGQLNNPRDFTTAPSRTVYLGNIPATITYKALLDYVRTGVVEEVKIL 264
Q AE P + + L DF R + LGN+P LL + +G +E+++
Sbjct: 188 QQPAEQFSPFNSEYESL---LDF-----RALILGNLPVDYKISELLSLIHSGPLEKIQSN 239
Query: 265 SEKMCAFVSFVDENDALLFHSDAILKRLNIDGRDIKIGWGKPQPIDPIVRAGIANDGATR 324
K ++F+D DA F+ + GR +K+ + +P P+ ++ +N A+R
Sbjct: 240 PGKRRIIITFLDSADAFFFYERYHPRGFIFHGRPLKLTFARPSPLPESIQNFCSNTAASR 299
Query: 325 NVYIGKLNTNKDSCEKWGADPKEILVTKEKLYDDLSQFGEIESIKLVEDRGIAFVHFTSI 384
NV+IG L ++ ++++ + +FG+IE IK++ + IAFVHF +I
Sbjct: 300 NVFIGNLPSSYH---------------EKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNI 344
Query: 385 FAAIKAVANIGSIDPYYSNKKVFYGKDRCAFITKTQQHNVAQFLGIQPGMEALMENNREX 444
AIK V + S DP Y + ++F+G DRCA + + + + R+
Sbjct: 345 RDAIKVVRTL-SCDPDYHSWRIFFGSDRCA--NHPPSFDERSCFTSKQNPDTTSDRCRQQ 401
Query: 445 XXXXXXXXXXXXXXXXXXXXXXNNLGNRTVYLGNLPKNVKLEEICNAIRGGLLQNIKLLN 504
+ GNRTV+LGNL K EIC+ IR G LQ+ +
Sbjct: 402 ES--------------------KDNGNRTVFLGNLHTKTKGHEICDLIRHGGLQDFHYIP 441
Query: 505 DRHVCFVTFIDPTAAAQFYAMSSLHGLTIHNKRCKIGWGKHSGPLPNPIALAVSRGASRN 564
++H+CFVTFI +AA F+ + + +H +R K+GWGK SGPLP + ++ GASRN
Sbjct: 442 EKHICFVTFITYSAANAFHDYLAEEEVLLHGRRIKVGWGKESGPLPRVLEDSILMGASRN 501
Query: 565 IYLGNINFEEDAKQEESVFAEDTLRAIFEEFGTVEQINFLYEKNCCFINFANISNAILAI 624
+Y +I+ +S+ E+ L I ++G +E I +L ++ F+ + NISNA+ A+
Sbjct: 502 VYFSHIS--------DSLTTEE-LELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAV 552
Query: 625 DKIKSNPHFNNLKINFGKDRC 645
+ + +P F KI + DRC
Sbjct: 553 NGLPIHPLFKKSKIRYAPDRC 573
Score = 100 bits (248), Expect = 9e-21
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 472 RTVYLGNLPKNVKLEEICNAIRGGLLQNIKLLNDRHVCFVTFIDPTAAAQFYAMSSLHGL 531
R + LGNLP + K+ E+ + I G L+ I+ + +TF+D A FY G
Sbjct: 208 RALILGNLPVDYKISELLSLIHSGPLEKIQSNPGKRRIIITFLDSADAFFFYERYHPRGF 267
Query: 532 TIHNKRCKIGWGKHSGPLPNPIALAVSR-GASRNIYLGNINFEEDAKQEESVFAEDTLRA 590
H + K+ + + S PLP I S ASRN+++GN+ S + E +
Sbjct: 268 IFHGRPLKLTFARPS-PLPESIQNFCSNTAASRNVFIGNL---------PSSYHEKEIEE 317
Query: 591 IFEEFGTVEQINFLYEKNCCFINFANISNAILAIDKIKSNPHFNNLKINFGKDRCGNVPR 650
F +FG +E I L +KN F++F NI +AI + + +P +++ +I FG DRC N P
Sbjct: 318 AFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSCDPDYHSWRIFFGSDRCANHPP 377
Query: 651 QF 652
F
Sbjct: 378 SF 379
>YML117w [R] KOG0118 FOG: RRM domain
Length = 1134
Score = 165 bits (418), Expect = 2e-40
Identities = 86/214 (40%), Positives = 128/214 (59%), Gaps = 32/214 (14%)
Query: 467 NNLGNRTVYLGNLPKNVKLEEICNAIRGGLLQNIKLLNDRHVCFVTFIDPTAAAQFYAMS 526
+++GNRT+Y+GN+ K E+ICN +RGG+LQ+IK + ++ +CFVTFI+ +A QFYA S
Sbjct: 648 SDIGNRTIYIGNINPRSKAEDICNVVRGGILQSIKYIPEKKICFVTFIEAPSAVQFYANS 707
Query: 527 SLHGLTIHNKRCKIGWGKHSGPLPNPIALAVSRGASRNIY--LGNINFEED-------AK 577
+ + +H ++GWG +SGPLP I+LAV+ GASRN+Y L F+E K
Sbjct: 708 FIDPIVLHGNMLRVGWGHYSGPLPKLISLAVTIGASRNVYVSLPEFAFKEKFIHDPQYKK 767
Query: 578 QEESVFAEDT--LRAIFEEFGTVEQINFLYEKNCCFINFANISNAILAIDKI-------- 627
E++ D LR F +G +EQIN+L + +CC+INF NIS+AI ++++
Sbjct: 768 LHETLSLPDAEQLREDFSTYGDIEQINYLSDSHCCWINFMNISSAISLVEEMNKESTVQN 827
Query: 628 -------------KSNPHFNNLKINFGKDRCGNV 648
K + L IN+GKDRCGN+
Sbjct: 828 ESGEVTLKRATEEKFGGRYKGLLINYGKDRCGNI 861
Score = 82.0 bits (201), Expect = 3e-15
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 50/290 (17%)
Query: 177 SSEFLSPIPVNVMSAEPQDHMSTVNMIAQFTAEANLPLS--LQSGQLNNPRDFTTA---- 230
S + SP+P+N + S +I Q P+S LQ Q P T +
Sbjct: 576 SQDIPSPLPLNEHMFMNDSNQSNGAIIPQQLIATPSPVSPNLQMNQRVLPNPITQSLEQN 635
Query: 231 ---------------PSRTVYLGNIPATITYKALLDYVRTGVVEEVKILSEKMCAFVSFV 275
+RT+Y+GNI + + + VR G+++ +K + EK FV+F+
Sbjct: 636 FNVSAKVASSMGSDIGNRTIYIGNINPRSKAEDICNVVRGGILQSIKYIPEKKICFVTFI 695
Query: 276 DENDALLFHSDAILKRLNIDGRDIKIGWGKPQPIDPIVRAGIANDGATRNVYIGKLNTNK 335
+ A+ F++++ + + + G +++GWG P + + GA+RNVY+
Sbjct: 696 EAPSAVQFYANSFIDPIVLHGNMLRVGWGHYSGPLPKLISLAVTIGASRNVYVSL--PEF 753
Query: 336 DSCEKWGADPKE-------ILVTKEKLYDDLSQFGEIESIKLVEDRGIAFVHFTSIFAAI 388
EK+ DP+ L E+L +D S +G+IE I + D +++F +I +AI
Sbjct: 754 AFKEKFIHDPQYKKLHETLSLPDAEQLREDFSTYGDIEQINYLSDSHCCWINFMNISSAI 813
Query: 389 KAVANIG--------------------SIDPYYSNKKVFYGKDRCAFITK 418
V + Y + YGKDRC I K
Sbjct: 814 SLVEEMNKESTVQNESGEVTLKRATEEKFGGRYKGLLINYGKDRCGNINK 863
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 60.5 bits (145), Expect = 8e-09
Identities = 82/351 (23%), Positives = 136/351 (38%), Gaps = 64/351 (18%)
Query: 222 NNPRDFTTAPSRTVYLGNIPATITYKALLD-YVRTGVVEEVKIL--SEKMCAFVSFVDEN 278
N P F + R+VY+GNI +T L + + TG VE K++ + FV + D
Sbjct: 48 NLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRR 107
Query: 279 DALLFHSDAILKRLNIDGRDIKIGWGKPQPIDPIVRAGIANDGATR-NVYIGKLNTNKDS 337
A L AI L+++GR + +G+P ++ G D ++ N+++G L+
Sbjct: 108 SAAL----AI---LSLNGRHL---FGQPIKVNWAYATGQREDTSSHFNIFVGDLSPE--- 154
Query: 338 CEKWGADPKEILVTKEKLYDDLSQFGEIESIKLVED------RGIAFVHFTSIFAAIKAV 391
VT LY S F +++ D RG FV F + A A+
Sbjct: 155 ------------VTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 392 ANIGSIDPYYSNKKVFYGKDRCAFITKTQQHNVAQFLGIQPGMEALMENNREXXXXXXXX 451
+ + S++++ RC + TK G G + L + +
Sbjct: 203 NEMNG--KWLSSRQI-----RCNWATK----------GATSGDDKLSSDGK-SVVELTTG 244
Query: 452 XXXXXXXXXXXXXXXNNLGNRTVYLGNLPKNV---KLEEICNAIRGGLLQNIKLLNDRHV 508
NN TVY+GNL V L +A+ G+++ +++ D+
Sbjct: 245 SSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGF 304
Query: 509 CFVTFIDPTAAAQFYAMSSLHGLTIHNKRCKIGWGKH-------SGPLPNP 552
FV + AA M + + N++ K WG S PLP P
Sbjct: 305 GFVRYNTHPEAALAIQMGNTQPY-LFNRQIKCSWGNKPTPPGTASNPLPPP 354
>At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 483
Score = 52.8 bits (125), Expect = 2e-06
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 217 QSGQLNNPRDFTTAPSRTVYLGNIPATITYKALLD-YVRTGVVEEVKILSEKMCAFVSFV 275
+ G L +P D + RT+Y+G + + + + + D + G +E ++IL+EK CAFV++
Sbjct: 215 EMGTLESPEDQSI---RTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYT 271
Query: 276 DENDALLFHSDAILKRLNIDGRDIKIGWGKPQPIDP 311
A ++ + RL ++G+ +K+ WG+PQ P
Sbjct: 272 TREGAEK-AAEELSNRLVVNGQRLKLTWGRPQVPKP 306
>At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 481
Score = 51.6 bits (122), Expect = 4e-06
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 217 QSGQLNNPRDFTTAPSRTVYLGNIPATITYKALLD-YVRTGVVEEVKILSEKMCAFVSFV 275
+ G L +P D + +T+Y+G + + I + + D + G +E ++IL++K CAFV++
Sbjct: 215 EMGTLESPDDESI---KTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYT 271
Query: 276 DENDALLFHSDAILKRLNIDGRDIKIGWGKPQPIDPIV--RAGIANDGATRNVYIGKLNT 333
A + + RL I+G+ +K+ WG+P+P + G+A+ G I + +
Sbjct: 272 SREGAEK-AAQELSNRLVINGQRLKLTWGRPKPDQDGANQQGGVAHSGLLPRAVISQQHN 330
Query: 334 NKDSCEKWGADP 345
+++ P
Sbjct: 331 QPPPMQQYYMHP 342
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 51.2 bits (121), Expect = 5e-06
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 44/194 (22%)
Query: 231 PSRTVYLGNIPATITYKALLD-YVRTGVVEEVKILSEKMC------AFVSFVDENDALLF 283
P ++Y+G++ + +T L + + G V +++ + + A+V+F DA
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA--- 65
Query: 284 HSDAILKRLNID---GRDIKIGWGKPQPIDPIVRAGIANDGATRNVYIGKLNTNKDSCEK 340
+ L +N D G+ I+I W + P + ++G+ N V+I L+ + D+
Sbjct: 66 --ERALDTMNFDVIKGKPIRIMWSQRDP--SLRKSGVGN------VFIKNLDKSIDN--- 112
Query: 341 WGADPKEILVTKEKLYDDLSQFGEIESIKLVED----RGIAFVHFTSIFAAIKAVANIGS 396
+ LYD S FG I S K+V D +G AFVHF + AA KA+ +
Sbjct: 113 ------------KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 397 IDPYYSNKKVFYGK 410
+ +++KVF G+
Sbjct: 161 M--LLNDRKVFVGR 172
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,772,331
Number of Sequences: 60738
Number of extensions: 1361817
Number of successful extensions: 4079
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4021
Number of HSP's gapped (non-prelim): 21
length of query: 652
length of database: 30,389,216
effective HSP length: 113
effective length of query: 539
effective length of database: 23,525,822
effective search space: 12680418058
effective search space used: 12680418058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)