ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5072 good S KOG0270 Function unknown WD40 repeat-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5072 1735426 1733711 -572
(572 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR196w [S] KOG0270 WD40 repeat-containing protein 729 0.0
SPBC1711.16 [S] KOG0270 WD40 repeat-containing protein 298 1e-80
Hs5902034 [S] KOG0270 WD40 repeat-containing protein 219 7e-57
CE23841 [S] KOG0270 WD40 repeat-containing protein 149 1e-35
7303688 [S] KOG0270 WD40 repeat-containing protein 144 5e-34
At4g35370 [S] KOG0270 WD40 repeat-containing protein 113 7e-25
At4g18900 [S] KOG0270 WD40 repeat-containing protein 112 2e-24
YEL056w [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 56 1e-07
YBR195c [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 55 4e-07
SPAC4D7.03 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 53 1e-06
SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF... 51 4e-06
ECU02g1400 [A] KOG0284 Polyadenylation factor I complex subunit ... 50 9e-06
At5g08390 [D] KOG0267 Microtubule severing protein katanin p80 s... 50 9e-06
>YLR196w [S] KOG0270 WD40 repeat-containing protein
Length = 576
Score = 729 bits (1881), Expect = 0.0
Identities = 370/563 (65%), Positives = 430/563 (75%), Gaps = 13/563 (2%)
Query: 1 MLSATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEAKHDLXXXXXXXXXXXXXXX 60
M+SAT+WVPRGF+SEFPEKY L+DEE+ERIN+LA+LNLD+AK L
Sbjct: 1 MISATNWVPRGFSSEFPEKYVLDDEEVERINQLAQLNLDDAKATLEEAEGESGVEDDAA- 59
Query: 61 XXXXPTTNGNALKDQLAVDDDLKEFDLEHYDDPE---DEANAQDAMFMGLSEE--VKFYX 115
T + N LKDQL +DDDLKE++LE YDD E +E +MF GLS + VKF+
Sbjct: 60 -----TGSSNKLKDQLDIDDDLKEYNLEEYDDEEIADNEGGKDVSMFPGLSNDSDVKFHE 114
Query: 116 XXXXXDPYISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSD 175
DPYISLP +D EEKQELQVYP+DN+VLA RTE GAGFH SD
Sbjct: 115 GEKGEDPYISLPNQEDSQEEKQELQVYPSDNLVLAARTEDDVSYLDIYVYDDGAGFHSSD 174
Query: 176 IPSEKGDEQDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLNYKPGSNSDETVANFAAVG 235
IP E+GDE DPDVARGLVRD +LYVHHDLMLPAFPLCVE L+YK GSNS+E AN+AA+G
Sbjct: 175 IPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGSNSEEA-ANYAAIG 233
Query: 236 TFDPAIEIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLA 295
TFDP IEIWNLDCVDKAFPDMILGEP DNS+ H+TTHHTDA+LS+A
Sbjct: 234 TFDPQIEIWNLDCVDKAFPDMILGEPLDNSMVSLKSKKKKKKSKTGHITTHHTDAVLSMA 293
Query: 296 HNKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYD 355
HNK FR+VLASTSADHTVKLWDLN+ AARSL +IHSN NVS+S+WH NGS+LLT GYD
Sbjct: 294 HNKYFRSVLASTSADHTVKLWDLNSGNAARSLASIHSNKNVSSSEWHMLNGSILLTGGYD 353
Query: 356 SRAALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIFICGTDNGNVYSFDIRNGAESK 415
SR AL+DVRI +++ MSKYW+ +GEEIE V FA ENI +CGTD+GNVYSFDIRN K
Sbjct: 354 SRVALTDVRISDESQMSKYWSAMAGEEIETVTFASENIILCGTDSGNVYSFDIRNNENRK 413
Query: 416 PVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPL-DAKPGKGPSMVLSRDFG 474
PVWTLKAHDAG+S++ N+ IP M+ T AMGEK VKLWK PL DA KGPSMVLSRDF
Sbjct: 414 PVWTLKAHDAGISTLCSNKFIPGMMSTGAMGEKTVKLWKFPLDDATNTKGPSMVLSRDFD 473
Query: 475 VGNVLTTSFAPDIEIAGNMVVGGVSPGLKLWDVFTNRSVRKSFQPELKTLQQRAREEAIA 534
VGNVLT+SFAPDIE+AG MV+GGV+ LKLWDVFTNRSVRKSF+ EL+ +Q RA+EEA
Sbjct: 474 VGNVLTSSFAPDIEVAGTMVIGGVNKVLKLWDVFTNRSVRKSFKSELENVQARAKEEAQK 533
Query: 535 LGKSSRIARKYTKNDNPETVLTV 557
+GKSSRIARKYT NDNP+TV+T+
Sbjct: 534 IGKSSRIARKYTSNDNPDTVITI 556
>SPBC1711.16 [S] KOG0270 WD40 repeat-containing protein
Length = 516
Score = 298 bits (763), Expect = 1e-80
Identities = 190/535 (35%), Positives = 282/535 (52%), Gaps = 55/535 (10%)
Query: 1 MLSATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEAKHDLXXXXXXXXXXXXXXX 60
++S+ ++VPRG+ASEFP+ Y++++ E ERIN+L+KL L++A+ DL
Sbjct: 3 IVSSVAFVPRGYASEFPKSYDIDEIEYERINQLSKLKLEDARADLQSSMEDSNKANGNGE 62
Query: 61 XXXXPTTNG--NALKDQLAVDDDLKEFDLEHYDDPEDEANAQDAMFMGLSEEVKFYXXXX 118
TT+G L+ VDD+LK ++L+ YDD E+EA + M + Y
Sbjct: 63 E----TTDGAEGVLQTSEEVDDELKVYNLDTYDDDEEEAETEGPAAMFSNIRGLAYHENG 118
Query: 119 XXDPYISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSDIPS 178
DPYI++ + D E++E+Q+ PTD+++LA RTE P+
Sbjct: 119 EKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYE----------PT 168
Query: 179 EKGDEQDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLNYKPGSNSDETVANFAAVGTFD 238
E+ +LYVHHD +LP FPLC+E L+YK G+ SD N+ AVGTFD
Sbjct: 169 EE----------------NLYVHHDFLLPTFPLCLEWLDYKVGT-SDNAPGNYVAVGTFD 211
Query: 239 PAIEIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAHNK 298
P IEIW+LD +D +P +LG A + ++HTDA+L+L+ N+
Sbjct: 212 PEIEIWDLDIIDAVYPAAVLG-------AGASQVNKKKKKSKKINDSYHTDAVLALSSNR 264
Query: 299 QFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDSRA 358
+L S SAD T+KLWDL+T +S HS+ VS W+ SVLL+ YD A
Sbjct: 265 NAHNLLVSGSADTTLKLWDLSTCNCVKS-FTYHSD-KVSCLDWYSKAPSVLLSGSYDKTA 322
Query: 359 ALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIFICGTDNGNVYSFDIRNGAESKPVW 418
++D+R+E S + S E + + ++ N FI GTDNG VY D RN SK VW
Sbjct: 323 KIADLRLE--EAPSSFQVTSDVENVAWDQHSENNFFI-GTDNGIVYYCDARN--LSKSVW 377
Query: 419 TLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGPSMVLSRDFGVGNV 478
L+AHD +S + +N +P+ + T + ++ VKLW P MV+SRD VG V
Sbjct: 378 QLQAHDGPISCLSVNPSVPSFVATGST-DRVVKLWN-----TSDSSPKMVVSRDLDVGRV 431
Query: 479 LTTSFAPDIEIAGNMVVGGVSPGLKLWDVFTNRSVRKSFQPELKTLQQRAREEAI 533
T SF D A ++ G +++WD TN VRK+F E + ++ ++E I
Sbjct: 432 FTCSFTTDESTAFHLAASGSKGVVRVWDTATNPGVRKAF--ESRVTEEVTKKERI 484
>Hs5902034 [S] KOG0270 WD40 repeat-containing protein
Length = 501
Score = 219 bits (559), Expect = 7e-57
Identities = 161/538 (29%), Positives = 249/538 (45%), Gaps = 62/538 (11%)
Query: 2 LSATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEA-----KHDLXXXXXXXXXXX 56
++ +WV G A E P+K EL+ EE++R+ AK L E + +
Sbjct: 7 VTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGGSDEEETGSPSEDGMQSA 66
Query: 57 XXXXXXXXPTTNGNALKDQLAVDDDLKEFDLEHYDDPEDEANAQDAMFMGLSEEVKFYXX 116
P +G+ D+ DD+L E+DL+ YD+ D DA +G S
Sbjct: 67 RTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDP----DAETLGESLLGLTVYG 122
Query: 117 XXXXDPYISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSDI 176
DPY++L ++ E+++ + P+DN+++ R E
Sbjct: 123 SNDQDPYVTLKDTEQ--YEREDFLIKPSDNLIVCGRAEQ--------------------- 159
Query: 177 PSEKGDEQDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLNYKPGSNSDETVANFAAVGT 236
D+ + +V + S YVHHD++L A+PL VE LN+ P + D++ N+ AVG
Sbjct: 160 -----DQCNLEVHVYNQEEDSFYVHHDILLSAYPLSVEWLNFDP--SPDDSTGNYIAVGN 212
Query: 237 FDPAIEIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAH 296
P IE+W+LD VD P LG HTDA+L L+
Sbjct: 213 MTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEG--------HTDAVLDLSW 264
Query: 297 NKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDS 356
NK R VLAS SAD+TV LWD++ A SL +H++ V Q+HP L++ YD
Sbjct: 265 NKLIRNVLASASADNTVILWDMSLGKPAASLA-VHTD-KVQTLQFHPFEAQTLISGSYDK 322
Query: 357 RAALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIFICGTDNGNVYSFDIRNGAESKP 416
AL D R + ++ + W S E F+ TD+G VY+ D R+ KP
Sbjct: 323 SVALYDCR--SPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARS---DKP 377
Query: 417 VWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGPSMVLSRDFGVG 476
++TL AH+ +S ++++ I L+T A +K VK+W G PS+V SRD +G
Sbjct: 378 IFTLNAHNDEISGLDLSSQIKGCLVT-ASADKYVKIWDI-----LGDRPSLVHSRDMKMG 431
Query: 477 NVLTTSFAPDIEIAGNMVVGGVSPGLKLWDVFTNRSVRKSFQPELKTLQQRAREEAIA 534
+ +S PD+ GG GL++WD+ T SV ++F + + AR +I+
Sbjct: 432 VLFCSSCCPDLPFI--YAFGGQKEGLRVWDISTVSSVNEAFGRRERLVLGSARNSSIS 487
>CE23841 [S] KOG0270 WD40 repeat-containing protein
Length = 476
Score = 149 bits (375), Expect = 1e-35
Identities = 138/524 (26%), Positives = 221/524 (41%), Gaps = 71/524 (13%)
Query: 1 MLSATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEAKHDLXXXXXXXXXXXXXXX 60
M+S SW+ RG A E P+K +L+DE+++ + E A + + +L
Sbjct: 15 MVSDLSWIQRGVAKEIPDKIKLDDEKLKELIEGAIPESTDNETELDDDEESDNEKL---- 70
Query: 61 XXXXPTTNGNALKDQLAVDDDLKEFDLEHY----DDPEDEANAQDAMFMGLSEEVKFYXX 116
G + + + D+ EF+ ++ ++ +DE QD M + + Y
Sbjct: 71 -------KGLRGRGDVEMKDEESEFEKKYMKGYNENIKDEPEGQDGM-----KGIAMYST 118
Query: 117 XXXXDPYISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSDI 176
DPY++ D+ EEK E+ V DNMV + + D +
Sbjct: 119 NKD-DPYVTEQVDSDEEEEKDEIMVRKDDNMVAVAKIDKG----------------DFTL 161
Query: 177 PSEKGDEQDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLNYKPGSNSDETVANFAAVGT 236
+E D D Y HHD +L A PLC+E + + PG N + N AVGT
Sbjct: 162 ECYVYNEADSD----------WYCHHDYILDAPPLCIEPVQHDPG-NEETGKGNLLAVGT 210
Query: 237 FDPAIEIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAH 296
+ I IW+LD ++ A P + LG+ + HTDA++SLA
Sbjct: 211 MNSEIHIWDLDIMNTATPFLTLGKKERK-------VKGAARKKRDNSAQGHTDAVISLAW 263
Query: 297 NKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDS 356
N+ VLAS AD TV LWDL+ A A+ + + + +WHP+ + LL
Sbjct: 264 NRITTHVLASGGADKTVVLWDLDEAKPAQIIPD--QGGEIQTMKWHPNESTFLLLGTMKG 321
Query: 357 RAALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIF--ICGTDNGNVYSFDIRNGAES 414
+ + D R E+ + S W +IE V + N F C +D+G + D+R E
Sbjct: 322 QVNVVDCR-ESSGNASAAWKFDG--QIEKVIWNHFNPFTAFCSSDDGRLRHLDMRKPGEC 378
Query: 415 KPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGPSMVLSRDFG 474
+W AHD + + ++ +L+T E + +WK G V S
Sbjct: 379 --LWEGVAHDGPIGGLTLSALTKGLLVTVGEDEM-MNVWKV---EDTNGGIEKVHSEKLT 432
Query: 475 VGNVLTTSFAPDIEIAGNMVVGGVSPGL-KLWDVFTNRSVRKSF 517
+G + F PD +A + VGG + L ++ D+ V K+F
Sbjct: 433 IGELHCAQFNPD--VAAVLSVGGTAADLIRIIDLTKYEPVVKAF 474
>7303688 [S] KOG0270 WD40 repeat-containing protein
Length = 459
Score = 144 bits (362), Expect = 5e-34
Identities = 135/517 (26%), Positives = 205/517 (39%), Gaps = 82/517 (15%)
Query: 4 ATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEAKHDLXXXXXXXXXXXXXXXXXX 63
A +VPRG A + P+K L E+ RI + LDE D
Sbjct: 16 ALCFVPRGVAKDRPDKIVLTQAELARIIGDTQQELDEESDD------------------- 56
Query: 64 XPTTNGNALKDQLAVD-DDLKEFDLEHYDDPEDEANAQDAMFMGLSEEVKFYXXXXXXDP 122
NA +DQ +D DD + + E+ D P+DE Q+ D
Sbjct: 57 DAEEGENAEEDQNDMDVDDHADANSENRD-PQDEFQFQE---YDNEANANVTSLANIVDA 112
Query: 123 YISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSDIPSEKGD 182
+P +D E + E+ + P+DN++L + D
Sbjct: 113 GEQIPDEDEDSEAEDEV-IKPSDNLILVGHVQD--------------------------D 145
Query: 183 EQDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLNYKPGSNSDETVANFAAVGTFDPAIE 242
+V + +LY HHD +LP+FPLC+E +N+ GS E N A+G DP I
Sbjct: 146 AASMEVWVFNQEEEALYTHHDFLLPSFPLCIEWMNHDAGS---EKAGNMCAIGCMDPIIT 202
Query: 243 IWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAHNKQFRA 302
+W+LD D P LG H DA+L L+ N F
Sbjct: 203 VWDLDIQDAIEPTFKLGSKGSRK--------------QNKEQYGHKDAVLDLSWNTNFEH 248
Query: 303 VLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDSRAALSD 362
+LAS S D TV LWD++ ++ + + ++HP +LT D L D
Sbjct: 249 ILASGSVDQTVILWDMDEGQPHTTITAF--GKQIQSLEFHPQEAQSILTGCADGYVRLFD 306
Query: 363 VR-IENDNDMSKYWNVSSGEEIECVRFADENIFICGTDNGNVYSFDIRNGAESKPVWTLK 421
R E N S W V E + FI GT++G ++ D R+ + +W++K
Sbjct: 307 CRDAEGVNSSSIEWKVDGEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQL--LWSVK 364
Query: 422 AHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGPSMVLSRDFGVGNVLTT 481
AH+ +S V N PN LLTS E +K+W G V +F +G +
Sbjct: 365 AHNEEISGVCFNNQKPN-LLTSTSTEGTLKVWNF-----DGTEAKHVYEHEFNMGRLQCM 418
Query: 482 SFAPDIEIAGNMVVGGVS-PGLKLWDVFTNRSVRKSF 517
P E + GG P ++++ + +VR++F
Sbjct: 419 RQCP--EDPYTLAFGGEKPPRCAIFNIKNSIAVRRTF 453
>At4g35370 [S] KOG0270 WD40 repeat-containing protein
Length = 414
Score = 113 bits (283), Expect = 7e-25
Identities = 107/452 (23%), Positives = 177/452 (38%), Gaps = 85/452 (18%)
Query: 4 ATSWVPRGFASEFPEKYELNDEEMERINELAKLNLDEAKHDLXXXXXXXXXXXXXXXXXX 63
A SW+P+ + P E E + +E+ + AK
Sbjct: 5 ALSWIPKEASKAMPVAAESPCMEEKMDDEIQNAQVTHAK--------------SVAKSFG 50
Query: 64 XPTTNGNALKDQLAVDDDLKEFDLEHYDDPEDEANAQDAMFMGLSEEVKFYXXXXXXDPY 123
++ D V LKE D+++YD+ +DE + S + Y DPY
Sbjct: 51 KSKVASSSSTDADEVVKFLKELDMDNYDEEDDEIE------LFSSGQGHLYYPSNDMDPY 104
Query: 124 ISLPKSKDDVEEKQELQVYPTDNMVLATRTEXXXXXXXXXXXXXGAGFHDSDIPSEKGDE 183
+ D E+ +L + PTD++++ + H+ + E
Sbjct: 105 LKDTDGDYDSEDHDDLTIRPTDSLIICAAIK-----------------HEVNYLEVYVYE 147
Query: 184 QDPDVARGLVRDSSLYVHHDLMLPAFPLCVECLN--YKPGSNSDETVANFAAVGTFDPAI 241
+ ++ Y+ +D+++ PLC L+ K G NF A+GT + +I
Sbjct: 148 ESENI----------YLRNDMIISELPLCTAWLDCPLKGGGKG-----NFVAIGTMESSI 192
Query: 242 EIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAHNKQFR 301
EIW+LD V++ P + LG + + L N + R
Sbjct: 193 EIWDLDLVNEVLPCVQLGRIAGQT-------------------------LFFLTFNWENR 227
Query: 302 AVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDSRAALS 361
++AS S D VK+WD+ AT + H V A W+ VLL+ D L
Sbjct: 228 NIVASGSEDKKVKVWDV--ATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVLK 285
Query: 362 DVRIENDNDMSKYWNVSSGEEIECVRFADENIFICGTDNGNVYSFDIRNGAESKPVWTLK 421
D R +++ + W+ + E E+ F+ +G V FD R ++ P + +
Sbjct: 286 DGRDPSNSGLK--WSTEAKVEKLAWDPHSEHSFVVSLKDGTVKGFDTR-ASDLSPSFIIH 342
Query: 422 AHDAGVSSVEINRHIPNMLLTSAMGEKPVKLW 453
AHD+ VSS+ N H PN+L T + E VKLW
Sbjct: 343 AHDSEVSSISYNIHAPNLLATGSADES-VKLW 373
>At4g18900 [S] KOG0270 WD40 repeat-containing protein
Length = 964
Score = 112 bits (280), Expect = 2e-24
Identities = 123/524 (23%), Positives = 197/524 (37%), Gaps = 121/524 (23%)
Query: 1 MLSATSWVPRGF------ASEFPEKYELND--------EEMERINELAKLNLDEAKHDLX 46
M++A SW+P+G +E P K EL + +E NE + ++E ++
Sbjct: 431 MITAVSWIPKGNLKAVPDVAEPPSKEELKELIESGAFARNVEGSNEDEEEEIEEDGEEIS 490
Query: 47 XXXXXXXXXXXXXXXXXXPTTNGNALKDQLAVDDDLKEFDLEHYDDPEDEANA------- 99
+ + D+ V LKE D+++YD+ +D +
Sbjct: 491 EVDHAKAVAEALGKSSKSKAVSSSMEVDE--VSQGLKELDMDNYDEEDDGTFSWPFGVCS 548
Query: 100 ----------QDAMFMGLSEEVKFYXXXXXXDPYISLPKSKDDVEEKQELQVYPTDNMVL 149
+D + + S Y DPY+ +DD E+ + V PTD++++
Sbjct: 549 AILQVIILISRDKIELFSSGMGDLYYPSNEMDPYLKDVDDEDDEEDIDDTTVKPTDSVII 608
Query: 150 ATRTEXXXXXXXXXXXXXGAGFHDSDIPSEKGDEQDPDVARGLVRDSSLYVHHDLMLPAF 209
R E +G ++YVHH +++P F
Sbjct: 609 CARNEDDVSHLEVYLYEESSG------------------------SPNMYVHHHIIIPEF 644
Query: 210 PLCVECLN--YKPGSNSDETVANFAAVGTFD-PAIEIWNLDCVDKAFP--------DMIL 258
PLC L+ K G NF A+G+ D P IEIW+LD D+ P +MI+
Sbjct: 645 PLCTAWLDCPLKGGEK-----GNFVAIGSKDTPTIEIWDLDVRDEVLPCIQLGGIEEMIV 699
Query: 259 GEPTDNSIALPTXXXXXXXXXXXHVTTHHTD-AILS----LAHNKQF------------- 300
+ + P +++ AILS L + F
Sbjct: 700 SKKKKSKKQKPVCASNSSISSSSMASSNSKKVAILSQYLVLLGTRSFGMSKLTSVSDFLL 759
Query: 301 -----RAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYD 355
R +LAS SAD VK+WD+ T T + H V A W+ VLL+ +D
Sbjct: 760 ICLDKRNILASASADKKVKVWDVATGTC--KITMEHHTKEVQAVAWNHYAPEVLLSGSFD 817
Query: 356 SRAALSDVRIENDNDMSKYWNVSSGEEI--------------ECVRFADENIFICGTDNG 401
+ D R + + W+V S E + F + + ++G
Sbjct: 818 QTVVMKDGRQPSHSGFK--WSVMSDVESLAWDPHCEHSFVVHDTYLFLQIDKSVVSLEDG 875
Query: 402 NVYSFDIR---NGAES--KPVWTLKAH--DAGVSSVEINRHIPN 438
V FDIR +G++S P +T++AH D GVSS+ N PN
Sbjct: 876 TVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPN 919
Score = 66.6 bits (161), Expect = 1e-10
Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 180 KGDEQDPDVARGLVRDSSLYVHHDLMLPAFP--LCVECLNYKPGSNSDETVANFAAVGTF 237
K +E DP + R D D P P L + C + V NF AVG+
Sbjct: 126 KSNEMDPYLKRNDDHDDD----SDDDPPILPTDLVIVCAMTDDKEANRLDVWNFLAVGSD 181
Query: 238 D-PAIEIWNLDCVDKAFPDMILGEPTDNSIALPTXXXXXXXXXXXHVTTHHTDAILSLAH 296
P IEIW+LD A+ DM LP + HT ++L LA
Sbjct: 182 GTPTIEIWDLD----AWFDM-----------LPCVQLGGQNKEGNYKQGSHTRSVLGLAW 226
Query: 297 NKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGYDS 356
NK+FR +LAS SAD VK+WD+ T T + H V A W+ VLL+ +D
Sbjct: 227 NKEFRNILASASADKKVKVWDVATGTC--KITMEHHTKEVQAVAWNHYAPEVLLSGSFDQ 284
Query: 357 RAALSDV 363
L +V
Sbjct: 285 TVVLVNV 291
>YEL056w [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 401
Score = 56.2 bits (134), Expect = 1e-07
Identities = 41/173 (23%), Positives = 82/173 (46%), Gaps = 14/173 (8%)
Query: 287 HTDAILSLAHNKQFRAVLASTSADHTVKLWDLNT----ATAARSLINIHSNTNVSASQWH 342
H D +L+ + + L S S DHTV LW++ + R+ ++HS+ ++ ++WH
Sbjct: 159 HKDNGYALSFSTLVKGRLLSGSDDHTVALWEVGSGGDPTKPVRTWNDLHSDI-INDNKWH 217
Query: 343 PSNGSVLLTAGYDSRAALSDVRIENDNDMSKYWNVSSGEEIECVRFA--DENIFICGTDN 400
N + T DS ++DVR N + V + + F+ N+ +
Sbjct: 218 NFNKDLFGTVSEDSLLKINDVRANN----TTIDTVKCPQPFNTLAFSHHSSNLLAAAGMD 273
Query: 401 GNVYSFDIRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLW 453
VY +D+RN E P+ + H+ V+++E + H+ ++++S + + +W
Sbjct: 274 SYVYLYDLRNMKE--PLHHMSGHEDAVNNLEFSTHVDGVVVSSG-SDNRLMMW 323
>YBR195c [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 422
Score = 54.7 bits (130), Expect = 4e-07
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 293 SLAHNKQFRAVLASTSADHTVKLWDLNTATAARSLINI------HSNTNVSASQWHPSNG 346
SLA N Q A+L S+ ++ V++WD+ + +I++ T V+ W P++
Sbjct: 205 SLAWNLQQEALLLSSHSNGQVQVWDIKQYSHENPIIDLPLVSINSDGTAVNDVTWMPTHD 264
Query: 347 SVLLTAGYDSRAALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIFICGT--DNGNVY 404
S+ + +L D+R + + S G + RF +N I + NG +
Sbjct: 265 SLFAACTEGNAVSLLDLRTKKEKLQSNREKHDGG--VNSCRFNYKNSLILASADSNGRLN 322
Query: 405 SFDIRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLW 453
+DIRN +S P+ T++ H VS++E + + +L T+ + VKLW
Sbjct: 323 LWDIRNMNKS-PIATME-HGTSVSTLEWSPNFDTVLATAGQEDGLVKLW 369
>SPAC4D7.03 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 703
Score = 53.1 bits (126), Expect = 1e-06
Identities = 63/227 (27%), Positives = 101/227 (43%), Gaps = 40/227 (17%)
Query: 304 LASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNGSVLLTAGY-DSRAALS- 361
+ S S DHT+++W L T L NTN S +W + V G+ DS +S
Sbjct: 460 IVSGSRDHTLRVWKLPKNTDPPYL---PDNTN-SIDRWEKNPYFVHTLIGHTDSVRTISG 515
Query: 362 --DVRIENDNDMS-KYWNVSSGE----------EIECVRFADE-NIFICGTDNGNVYSFD 407
D+ + D S + W VS+GE I V + E NI I G+ + ++ +D
Sbjct: 516 YGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWD 575
Query: 408 IRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGPSM 467
+ G + L+ HDA V+ + + ++ L S + +++W D GK P M
Sbjct: 576 LSTGTCK---YVLEGHDAFVTLLNVFQN----RLISGSADSTIRIW----DLNTGK-PLM 623
Query: 468 VLSRDFGVGNVLTTSFAPDIEIAGNMVVGGVSPGLKLWDVFTNRSVR 514
VL + G +SF D + ++ G +KLWDV T + +R
Sbjct: 624 VLPSNSG----YISSFVSD----EHKIISGNDGSVKLWDVRTGKLLR 662
>SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 431
Score = 51.2 bits (121), Expect = 4e-06
Identities = 44/177 (24%), Positives = 80/177 (44%), Gaps = 12/177 (6%)
Query: 285 THHTDAILSLAHNKQFRAVLASTSADHTVKLWDLN--TATAARSLINIHSNTN---VSAS 339
T HT S+ N + L S S D T+ WDLN + + S++ +H +++ VS
Sbjct: 181 TKHTQPCTSVCWNFLSKGTLVSGSQDATLSCWDLNAYNESDSASVLKVHISSHEKQVSDV 240
Query: 340 QWHPSNGSVLLTAGYDSRAALSDVRIENDNDMSKYWNVSSGEEIECVRFADENIFI---C 396
++H + +L + YD + D+R + + + I V F N FI C
Sbjct: 241 RFHYKHQDLLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHNDFILATC 300
Query: 397 GTDNGNVYSFDIRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLW 453
TD + +D+RN ++ + TL+ H+ V+ + + H +L S ++ +W
Sbjct: 301 STDK-TIALWDLRN--LNQRLHTLEGHEDIVTKISFSPH-EEPILASTSADRRTLVW 353
>ECU02g1400 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 408
Score = 50.1 bits (118), Expect = 9e-06
Identities = 55/213 (25%), Positives = 94/213 (43%), Gaps = 42/213 (19%)
Query: 287 HTDAI--LSLAHNKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPS 344
HT+A+ LS +HN + S S D T+K+WD + S++ H N +V A+QWH
Sbjct: 179 HTEAVRDLSFSHND---SKFCSASDDSTIKIWD-SIEAKEESVLRGH-NWDVRAAQWHKY 233
Query: 345 NGSVLLTAGYDSRAALSDVRIENDNDMSKYWNVSSGEEIECVR-----------FADENI 393
S++ +AG D ++ K W+ + EE+ + DEN
Sbjct: 234 K-SLIASAGKD--------------NLVKMWDPRTAEELCTLHHHKNTILALKWMGDENY 278
Query: 394 FICGTDNGNVYSFDIRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLW 453
+ G + + DIR + V+T K H V+S+ + IP++ ++ E + W
Sbjct: 279 LLTGGKDQVIKMVDIRTMTD---VFTYKNHKKEVTSIGTHPCIPDIFVSGGT-EGGIYFW 334
Query: 454 KC----PLDAKPGKGPSMVLSRDF-GVGNVLTT 481
+ PL+ V S D+ VG++L +
Sbjct: 335 QAYTQVPLEVIEEGHEGTVWSLDYHPVGHILAS 367
>At5g08390 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 823
Score = 50.1 bits (118), Expect = 9e-06
Identities = 57/235 (24%), Positives = 99/235 (41%), Gaps = 25/235 (10%)
Query: 287 HTDAILSLAHNKQFRAVLASTSADHTVKLWDLNTATAARSLINIHSNTNVSASQWHPSNG 346
H+ I S+ + ++A+ +A T+KLWDL A R+L SN VS + +HP G
Sbjct: 151 HSSGIDSVTFDAS-EGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNC-VSVN-FHPF-G 206
Query: 347 SVLLTAGYDSRAALSDVRIENDNDMSKYWNVSSGEEIECVRFA-DENIFICGTDNGNVYS 405
+ D+ + D+R + Y + G + +RF D + G ++ V
Sbjct: 207 EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTRG--VNVLRFTPDGRWIVSGGEDNVVKV 262
Query: 406 FDIRNGAESKPVWTLKAHDAGVSSVEINRHIPNMLLTSAMGEKPVKLWKCPLDAKPGKGP 465
+D+ G K + K+H+ + S++ + H LL + +K VK W G G
Sbjct: 263 WDLTAG---KLLHEFKSHEGKIQSLDFHPH--EFLLATGSADKTVKFWDLETFELIGSGG 317
Query: 466 SMVLSRDFGVGNVLTTSFAPDIEIAGNMVVGGVSPGLKLWDVFTNRSVRKSFQPE 520
+ V +F PD G V+ G+ LK + + + + + PE
Sbjct: 318 TETT-------GVRCLTFNPD----GKSVLCGLQESLKRTEPMSGGATQSNSHPE 361
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,252,359
Number of Sequences: 60738
Number of extensions: 1317850
Number of successful extensions: 3939
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3869
Number of HSP's gapped (non-prelim): 34
length of query: 572
length of database: 30,389,216
effective HSP length: 112
effective length of query: 460
effective length of database: 23,586,560
effective search space: 10849817600
effective search space used: 10849817600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)